RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 FAM53AQ6NSI3 398 aaPredicted RBP4.99□□□□□ -1.61
HERC4-209ENST00000473533 RBPMS2Q6ZRY4 209 aaKnown RBP4.99□□□□□ -1.61
HERC4-209ENST00000473533 STPG4Q8N801 248 aa4.99□□□□□ -1.61
HERC4-209ENST00000473533 FAM167A-AS1Q96KT0 104 aa4.99□□□□□ -1.61
HERC4-209ENST00000473533 ZNF71Q9NQZ8 489 aaPredicted RBP4.99□□□□□ -1.61
HERC4-209ENST00000473533 SLC25A15Q9Y619 301 aa4.99□□□□□ -1.61
HERC4-209ENST00000473533 PTPRBP23467 1997 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 USF3Q68DE3 2245 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 IGLV3-9A0A075B6K5 115 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 C19orf67A6NJJ6 358 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 HIGD1CA8MV81 97 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 K7EQM0 130 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 LEPROTL1O95214 131 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 CDKN1BP46527 198 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 HINT1P49773 126 aaPredicted RBP4.98□□□□□ -1.61
HERC4-209ENST00000473533 TNFAIP6P98066 277 aaPredicted RBP4.98□□□□□ -1.61
HERC4-209ENST00000473533 SLAQ13239 276 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 FBLN7Q53RD9 439 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 ASCL5Q7RTU5 278 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 ZNRF1Q8ND25 227 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 NDFIP1Q9BT67 221 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 HCFC1P51610 2035 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 GTF3C1Q12789 2109 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 IGHV2-70DA0A0C4DH43 119 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 TRBV6-1A0A0K0K1D8 114 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 A0A1B0GXF2 115 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 OR4C46A6NHA9 309 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 LGALS7P47929 136 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 PAX2Q02962 417 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 VAMP3Q15836 100 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 ITLN1Q8WWA0 313 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 TRGV9Q99603 122 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 WNT10AQ9GZT5 417 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 WASHC3Q9Y3C0 194 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 COL27A1Q8IZC6 1860 aaPredicted RBP4.98□□□□□ -1.61
HERC4-209ENST00000473533 IGHV3OR15-7A0A075B7D8 119 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 PSMB11A5LHX3 300 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 TFPI2P48307 235 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 SLC35B1P78383 322 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 RIGQ13278 110 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 ZNF788Q6ZQV5 615 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 ZCCHC24Q8N2G6 241 aaKnown RBP4.98□□□□□ -1.61
HERC4-209ENST00000473533 FAM19A2Q8N3H0 131 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 LINC00311Q8N616 119 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 C9orf106Q8NAJ2 232 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 OR5AN1Q8NGI8 311 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 OR9G1Q8NH87 305 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 DPF1Q92782 380 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 PLPPR2Q96GM1 343 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 FZR1Q9UM11 496 aa4.98□□□□□ -1.61
HERC4-209ENST00000473533 CSN1S1P47710 185 aa4.97□□□□□ -1.61
HERC4-209ENST00000473533 GNG10P50151 68 aa4.97□□□□□ -1.61
HERC4-209ENST00000473533 HIST1H1AQ02539 215 aaPredicted RBP4.97□□□□□ -1.61
HERC4-209ENST00000473533 RNFT1Q5M7Z0 435 aa4.97□□□□□ -1.61
HERC4-209ENST00000473533 RIF1Q5UIP0 2472 aaKnown RBP4.97□□□□□ -1.61
HERC4-209ENST00000473533 TEX36Q5VZQ5 186 aa4.97□□□□□ -1.61
HERC4-209ENST00000473533 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.97□□□□□ -1.61
HERC4-209ENST00000473533 TRAV34A0A0B4J273 112 aa4.97□□□□□ -1.61
HERC4-209ENST00000473533 MBD3L4A6NDZ8 208 aaPredicted RBP4.97□□□□□ -1.61
HERC4-209ENST00000473533 MBD3L3A6NE82 208 aaPredicted RBP4.97□□□□□ -1.61
HERC4-209ENST00000473533 MBD3L5A6NJ08 208 aaPredicted RBP4.97□□□□□ -1.61
HERC4-209ENST00000473533 SYS1-DBNDD2H3BUS1 97 aa4.97□□□□□ -1.61
HERC4-209ENST00000473533 M0R1B8 84 aa4.97□□□□□ -1.61
HERC4-209ENST00000473533 SPRY3O43610 288 aa4.97□□□□□ -1.61
HERC4-209ENST00000473533 CAMPP49913 170 aa4.97□□□□□ -1.61
HERC4-209ENST00000473533 PRR27Q6MZM9 219 aa4.97□□□□□ -1.61
HERC4-209ENST00000473533 IGFL2Q6UWQ7 119 aa4.97□□□□□ -1.61
HERC4-209ENST00000473533 LINC00305Q7Z4B0 112 aa4.97□□□□□ -1.61
HERC4-209ENST00000473533 TMEM105Q8N8V8 129 aa4.97□□□□□ -1.61
HERC4-209ENST00000473533 MBD3L2Q8NHZ7 208 aaPredicted RBP4.97□□□□□ -1.61
HERC4-209ENST00000473533 FXYD5Q96DB9 178 aa4.97□□□□□ -1.61
HERC4-209ENST00000473533 GAFA1Q96PS6 74 aa4.97□□□□□ -1.61
HERC4-209ENST00000473533 OTORQ9NRC9 128 aa4.97□□□□□ -1.61
HERC4-209ENST00000473533 AKAP6Q13023 2319 aa4.97□□□□□ -1.61
HERC4-209ENST00000473533 IGKV1OR2-108A0A075B7D4 117 aa4.96□□□□□ -1.61
HERC4-209ENST00000473533 C2orf70A6NJV1 201 aa4.96□□□□□ -1.61
HERC4-209ENST00000473533 NDUFB8O95169 186 aa4.96□□□□□ -1.61
HERC4-209ENST00000473533 SP9P0CG40 484 aa4.96□□□□□ -1.61
HERC4-209ENST00000473533 S100A7P31151 101 aa4.96□□□□□ -1.61
HERC4-209ENST00000473533 PLP1P60201 277 aa4.96□□□□□ -1.61
HERC4-209ENST00000473533 SEC11AP67812 179 aa4.96□□□□□ -1.61
HERC4-209ENST00000473533 SSBP3Q9BWW4 388 aaPredicted RBP4.96□□□□□ -1.61
HERC4-209ENST00000473533 LAMA5O15230 3695 aa4.96□□□□□ -1.61
HERC4-209ENST00000473533 PGPA6NDG6 321 aa4.96□□□□□ -1.62
HERC4-209ENST00000473533 FBLL1A6NHQ2 334 aaKnown RBP4.96□□□□□ -1.62
HERC4-209ENST00000473533 K7ERU9 68 aa4.96□□□□□ -1.62
HERC4-209ENST00000473533 HAX1O00165 279 aa4.96□□□□□ -1.62
HERC4-209ENST00000473533 CD5LO43866 347 aa4.96□□□□□ -1.62
HERC4-209ENST00000473533 TFF1P04155 84 aa4.96□□□□□ -1.62
HERC4-209ENST00000473533 NBEAP1P0C6P0 100 aa4.96□□□□□ -1.62
HERC4-209ENST00000473533 IGLL1P15814 213 aa4.96□□□□□ -1.62
HERC4-209ENST00000473533 PLA2G5P39877 138 aa4.96□□□□□ -1.62
HERC4-209ENST00000473533 MYCNOSP40205 109 aa4.96□□□□□ -1.62
HERC4-209ENST00000473533 TEX45Q8NA69 505 aa4.96□□□□□ -1.62
HERC4-209ENST00000473533 NPIPB3Q92617 1050 aa4.96□□□□□ -1.62
HERC4-209ENST00000473533 TNFRSF14Q92956 283 aa4.96□□□□□ -1.62
HERC4-209ENST00000473533 AP1S3Q96PC3 154 aa4.96□□□□□ -1.62
HERC4-209ENST00000473533 PRSS22Q9GZN4 317 aa4.96□□□□□ -1.62
HERC4-209ENST00000473533 TMEM14CQ9P0S9 112 aa4.96□□□□□ -1.62
HERC4-209ENST00000473533 PEF1Q9UBV8 284 aaKnown RBP4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms