RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 RARRES2Q99969 163 aa12.19□□□□□ -0.46
USP40-212ENST00000473191 U3KQE9 123 aa12.19□□□□□ -0.46
USP40-212ENST00000473191 FABP12A6NFH5 140 aa12.18□□□□□ -0.46
USP40-212ENST00000473191 KNCNA6PVL3 124 aa12.18□□□□□ -0.46
USP40-212ENST00000473191 K7EQG2 157 aa12.18□□□□□ -0.46
USP40-212ENST00000473191 NOL3O60936 208 aaKnown RBP12.18□□□□□ -0.46
USP40-212ENST00000473191 LY6G6CO95867 125 aa12.18□□□□□ -0.46
USP40-212ENST00000473191 CA1P00915 261 aaPredicted RBP12.18□□□□□ -0.46
USP40-212ENST00000473191 USF2Q15853 346 aaPredicted RBP12.18□□□□□ -0.46
USP40-212ENST00000473191 GSG1LQ6UXU4 331 aa12.18□□□□□ -0.46
USP40-212ENST00000473191 OR11H2Q8NH07 326 aa12.18□□□□□ -0.46
USP40-212ENST00000473191 DCANP1Q8TF63 244 aa12.18□□□□□ -0.46
USP40-212ENST00000473191 NPIPB3Q92617 1050 aa12.18□□□□□ -0.46
USP40-212ENST00000473191 METTL26Q96S19 204 aa12.18□□□□□ -0.46
USP40-212ENST00000473191 BCL7BQ9BQE9 202 aa12.18□□□□□ -0.46
USP40-212ENST00000473191 AGRNO00468 2067 aa12.17□□□□□ -0.46
USP40-212ENST00000473191 CCDC160A6NGH7 325 aa12.17□□□□□ -0.46
USP40-212ENST00000473191 ZNF688P0C7X2 276 aa12.17□□□□□ -0.46
USP40-212ENST00000473191 SULT1A3P0DMM9 295 aa12.17□□□□□ -0.46
USP40-212ENST00000473191 SULT1A4P0DMN0 295 aa12.17□□□□□ -0.46
USP40-212ENST00000473191 OR10J1P30954 320 aa12.17□□□□□ -0.46
USP40-212ENST00000473191 CMC4P56277 68 aaPredicted RBP12.17□□□□□ -0.46
USP40-212ENST00000473191 NANOS2P60321 138 aaKnown RBP12.17□□□□□ -0.46
USP40-212ENST00000473191 KLF9Q13886 244 aaPredicted RBP12.17□□□□□ -0.46
USP40-212ENST00000473191 MCFD2Q8NI22 146 aa12.17□□□□□ -0.46
USP40-212ENST00000473191 TRIM63Q969Q1 353 aa12.17□□□□□ -0.46
USP40-212ENST00000473191 RSL24D1Q9UHA3 163 aaKnown RBP12.17□□□□□ -0.46
USP40-212ENST00000473191 TRAV2A0A0B4J234 112 aa12.16□□□□□ -0.46
USP40-212ENST00000473191 NUPR2A6NF83 97 aa12.16□□□□□ -0.46
USP40-212ENST00000473191 NPY1RP25929 384 aa12.16□□□□□ -0.46
USP40-212ENST00000473191 ZNF79Q15937 498 aa12.16□□□□□ -0.46
USP40-212ENST00000473191 OR1S2Q8NGQ3 325 aa12.16□□□□□ -0.46
USP40-212ENST00000473191 RNASEH2CQ8TDP1 164 aaKnown RBP12.16□□□□□ -0.46
USP40-212ENST00000473191 PHLDA1Q8WV24 401 aaPredicted RBP12.16□□□□□ -0.46
USP40-212ENST00000473191 GLMPQ8WWB7 406 aa12.16□□□□□ -0.46
USP40-212ENST00000473191 IL22RA2Q969J5 263 aa12.16□□□□□ -0.46
USP40-212ENST00000473191 ACY3Q96HD9 319 aa12.16□□□□□ -0.46
USP40-212ENST00000473191 RBKSQ9H477 322 aa12.16□□□□□ -0.46
USP40-212ENST00000473191 NDUFA13Q9P0J0 144 aa12.16□□□□□ -0.46
USP40-212ENST00000473191 SCP2D1Q9UJQ7 156 aa12.16□□□□□ -0.46
USP40-212ENST00000473191 V9GYH0 126 aa12.16□□□□□ -0.46
USP40-212ENST00000473191 TRAV30A0A087WSZ9 112 aa12.15□□□□□ -0.46
USP40-212ENST00000473191 RPS10-NUDT3A0A1W2PQS6 291 aa12.15□□□□□ -0.46
USP40-212ENST00000473191 A0A1W2PS18 150 aa12.15□□□□□ -0.46
USP40-212ENST00000473191 IL4P05112 153 aa12.15□□□□□ -0.46
USP40-212ENST00000473191 CD5P06127 495 aa12.15□□□□□ -0.46
USP40-212ENST00000473191 C4BPBP20851 252 aa12.15□□□□□ -0.46
USP40-212ENST00000473191 C16orf54Q6UWD8 224 aa12.15□□□□□ -0.46
USP40-212ENST00000473191 TRPT1Q86TN4 253 aaKnown RBP12.15□□□□□ -0.46
USP40-212ENST00000473191 GATAD1Q8WUU5 269 aa12.15□□□□□ -0.46
USP40-212ENST00000473191 TMEM231Q9H6L2 316 aa12.15□□□□□ -0.46
USP40-212ENST00000473191 RABL2AQ9UBK7 228 aaPredicted RBP12.15□□□□□ -0.46
USP40-212ENST00000473191 HSPB7Q9UBY9 170 aa12.15□□□□□ -0.46
USP40-212ENST00000473191 RABL2BQ9UNT1 228 aa12.15□□□□□ -0.46
USP40-212ENST00000473191 KCNIP3Q9Y2W7 256 aa12.15□□□□□ -0.46
USP40-212ENST00000473191 A0A0B4J2A0 478 aa12.14□□□□□ -0.47
USP40-212ENST00000473191 HNRNPCP07910 306 aaKnown RBP eCLIP12.14□□□□□ -0.47
USP40-212ENST00000473191 SLC25A4P12235 298 aa12.14□□□□□ -0.47
USP40-212ENST00000473191 ATF4P18848 351 aaPredicted RBP12.14□□□□□ -0.47
USP40-212ENST00000473191 YPEL3P61236 119 aaPredicted RBP12.14□□□□□ -0.47
USP40-212ENST00000473191 SMCO1Q147U7 214 aa12.14□□□□□ -0.47
USP40-212ENST00000473191 TMED4Q7Z7H5 227 aa12.14□□□□□ -0.47
USP40-212ENST00000473191 STHQ8IWL8 128 aa12.14□□□□□ -0.47
USP40-212ENST00000473191 DTD1Q8TEA8 209 aa12.14□□□□□ -0.47
USP40-212ENST00000473191 Q8WTZ3 238 aa12.14□□□□□ -0.47
USP40-212ENST00000473191 SHPKQ9UHJ6 478 aa12.14□□□□□ -0.47
USP40-212ENST00000473191 IFNA10P01566 189 aa12.13□□□□□ -0.47
USP40-212ENST00000473191 PSG1P11464 419 aa12.13□□□□□ -0.47
USP40-212ENST00000473191 CCR6P51684 374 aa12.13□□□□□ -0.47
USP40-212ENST00000473191 PYDC2Q56P42 97 aa12.13□□□□□ -0.47
USP40-212ENST00000473191 CLEC5AQ9NY25 188 aa12.13□□□□□ -0.47
USP40-212ENST00000473191 FBXL17Q9UF56 701 aa12.13□□□□□ -0.47
USP40-212ENST00000473191 FRAS1Q86XX4 4008 aa12.13□□□□□ -0.47
USP40-212ENST00000473191 IGKV1D-37A0A075B6S9 117 aa12.12□□□□□ -0.47
USP40-212ENST00000473191 TOMM40O96008 361 aa12.12□□□□□ -0.47
USP40-212ENST00000473191 DEFB1P60022 68 aa12.12□□□□□ -0.47
USP40-212ENST00000473191 ZNF90Q03938 601 aa12.12□□□□□ -0.47
USP40-212ENST00000473191 DHRS2Q13268 280 aa12.12□□□□□ -0.47
USP40-212ENST00000473191 ACTL10Q5JWF8 245 aa12.12□□□□□ -0.47
USP40-212ENST00000473191 LGI3Q8N145 548 aa12.12□□□□□ -0.47
USP40-212ENST00000473191 RPP25LQ8N5L8 163 aaKnown RBP12.12□□□□□ -0.47
USP40-212ENST00000473191 Q8NAQ8 132 aa12.12□□□□□ -0.47
USP40-212ENST00000473191 OR51G1Q8NGK1 321 aa12.12□□□□□ -0.47
USP40-212ENST00000473191 GRAMD2BQ96HH9 432 aa12.12□□□□□ -0.47
USP40-212ENST00000473191 VPS13DQ5THJ4 4388 aa12.11□□□□□ -0.47
USP40-212ENST00000473191 A6NHS1 94 aa12.11□□□□□ -0.47
USP40-212ENST00000473191 BUB3O43684 328 aa12.11□□□□□ -0.47
USP40-212ENST00000473191 PITX3O75364 302 aa12.11□□□□□ -0.47
USP40-212ENST00000473191 DEDDO75618 318 aa12.11□□□□□ -0.47
USP40-212ENST00000473191 RBMY1A1P0DJD3 496 aaKnown RBP12.11□□□□□ -0.47
USP40-212ENST00000473191 RBMY1CP0DJD4 496 aa12.11□□□□□ -0.47
USP40-212ENST00000473191 RD3LP0DJH9 198 aa12.11□□□□□ -0.47
USP40-212ENST00000473191 IAPPP10997 89 aa12.11□□□□□ -0.47
USP40-212ENST00000473191 RBMY1FQ15415 496 aaKnown RBP12.11□□□□□ -0.47
USP40-212ENST00000473191 PSMG4Q5JS54 123 aa12.11□□□□□ -0.47
USP40-212ENST00000473191 TMEM217Q8N7C4 229 aa12.11□□□□□ -0.47
USP40-212ENST00000473191 C11orf45Q8TAV5 145 aa12.11□□□□□ -0.47
USP40-212ENST00000473191 SCGB3A2Q96PL1 93 aa12.11□□□□□ -0.47
USP40-212ENST00000473191 C11orf68Q9H3H3 251 aaKnown RBP12.11□□□□□ -0.47
USP40-212ENST00000473191 U3KQ87 197 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms