RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 DEDDO75618 318 aa14.43□□□□□ -0.1
COL9A3-210ENST00000472880 S100A5P33763 92 aa14.43□□□□□ -0.1
COL9A3-210ENST00000472880 SURF2Q15527 256 aaPredicted RBP14.43□□□□□ -0.1
COL9A3-210ENST00000472880 MLANAQ16655 118 aa14.43□□□□□ -0.1
COL9A3-210ENST00000472880 TIGITQ495A1 244 aa14.43□□□□□ -0.1
COL9A3-210ENST00000472880 Q6ZRM9 215 aa14.43□□□□□ -0.1
COL9A3-210ENST00000472880 RBPMSQ93062 196 aaKnown RBP14.43□□□□□ -0.1
COL9A3-210ENST00000472880 PRRT1Q99946 306 aa14.43□□□□□ -0.1
COL9A3-210ENST00000472880 HEYLQ9NQ87 328 aaPredicted RBP14.43□□□□□ -0.1
COL9A3-210ENST00000472880 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.43□□□□□ -0.1
COL9A3-210ENST00000472880 CDS2O95674 445 aa14.42□□□□□ -0.1
COL9A3-210ENST00000472880 IGKV1-17P01599 117 aa14.42□□□□□ -0.1
COL9A3-210ENST00000472880 EIF2B2P49770 351 aaKnown RBP14.42□□□□□ -0.1
COL9A3-210ENST00000472880 AARDQ4LEZ3 155 aa14.42□□□□□ -0.1
COL9A3-210ENST00000472880 TMEM41BQ5BJD5 291 aa14.42□□□□□ -0.1
COL9A3-210ENST00000472880 CCDC190Q86UF4 302 aa14.42□□□□□ -0.1
COL9A3-210ENST00000472880 OR51S1Q8NGJ8 323 aa14.42□□□□□ -0.1
COL9A3-210ENST00000472880 OR52E5Q8NH55 327 aa14.42□□□□□ -0.1
COL9A3-210ENST00000472880 RTBDNQ9BSG5 229 aaPredicted RBP14.42□□□□□ -0.1
COL9A3-210ENST00000472880 NAA60Q9H7X0 242 aa14.42□□□□□ -0.1
COL9A3-210ENST00000472880 ZNF688P0C7X2 276 aa14.41□□□□□ -0.1
COL9A3-210ENST00000472880 SPP1P10451 314 aa14.41□□□□□ -0.1
COL9A3-210ENST00000472880 DHODHQ02127 395 aa14.41□□□□□ -0.1
COL9A3-210ENST00000472880 ZNF79Q15937 498 aa14.41□□□□□ -0.1
COL9A3-210ENST00000472880 PYDC2Q56P42 97 aa14.41□□□□□ -0.1
COL9A3-210ENST00000472880 TRPT1Q86TN4 253 aaKnown RBP14.41□□□□□ -0.1
COL9A3-210ENST00000472880 OR1S2Q8NGQ3 325 aa14.41□□□□□ -0.1
COL9A3-210ENST00000472880 LHFPL5Q8TAF8 219 aa14.41□□□□□ -0.1
COL9A3-210ENST00000472880 C2CD4CQ8TF44 421 aa14.41□□□□□ -0.1
COL9A3-210ENST00000472880 TRIM63Q969Q1 353 aa14.41□□□□□ -0.1
COL9A3-210ENST00000472880 CACNG5Q9UF02 275 aa14.41□□□□□ -0.1
COL9A3-210ENST00000472880 GPR132Q9UNW8 380 aa14.41□□□□□ -0.1
COL9A3-210ENST00000472880 CEBPZOSA8MTT3 80 aa14.4□□□□□ -0.1
COL9A3-210ENST00000472880 SLC25A4P12235 298 aa14.4□□□□□ -0.1
COL9A3-210ENST00000472880 RND2P52198 227 aa14.4□□□□□ -0.1
COL9A3-210ENST00000472880 C2orf83Q53S99 150 aa14.4□□□□□ -0.1
COL9A3-210ENST00000472880 MORN3Q6PF18 240 aaPredicted RBP14.4□□□□□ -0.1
COL9A3-210ENST00000472880 SLC24A4Q8NFF2 622 aa14.4□□□□□ -0.1
COL9A3-210ENST00000472880 GLYATL2Q8WU03 294 aa14.4□□□□□ -0.1
COL9A3-210ENST00000472880 SCP2D1Q9UJQ7 156 aa14.4□□□□□ -0.1
COL9A3-210ENST00000472880 HELTA6NFD8 242 aa14.39□□□□□ -0.11
COL9A3-210ENST00000472880 KNCNA6PVL3 124 aa14.39□□□□□ -0.11
COL9A3-210ENST00000472880 IGLC1P0CG04 106 aa14.39□□□□□ -0.11
COL9A3-210ENST00000472880 KLF9Q13886 244 aaPredicted RBP14.39□□□□□ -0.11
COL9A3-210ENST00000472880 TMEM268Q5VZI3 342 aa14.39□□□□□ -0.11
COL9A3-210ENST00000472880 SELENOHQ8IZQ5 122 aaKnown RBP14.39□□□□□ -0.11
COL9A3-210ENST00000472880 Q8NAQ8 132 aa14.39□□□□□ -0.11
COL9A3-210ENST00000472880 RNASEH2CQ8TDP1 164 aaKnown RBP14.39□□□□□ -0.11
COL9A3-210ENST00000472880 DCANP1Q8TF63 244 aa14.39□□□□□ -0.11
COL9A3-210ENST00000472880 Q8WTZ3 238 aa14.39□□□□□ -0.11
COL9A3-210ENST00000472880 MCUBQ9NWR8 336 aa14.39□□□□□ -0.11
COL9A3-210ENST00000472880 HNRNPCP07910 306 aaKnown RBP eCLIP14.38□□□□□ -0.111e-8■■■□□ 15.9
COL9A3-210ENST00000472880 OR10J1P30954 320 aa14.38□□□□□ -0.11
COL9A3-210ENST00000472880 TCTAP57738 103 aa14.38□□□□□ -0.11
COL9A3-210ENST00000472880 DHRS2Q13268 280 aa14.38□□□□□ -0.11
COL9A3-210ENST00000472880 PRSS54Q6PEW0 395 aa14.38□□□□□ -0.11
COL9A3-210ENST00000472880 GPR146Q96CH1 333 aa14.38□□□□□ -0.11
COL9A3-210ENST00000472880 IGHV4-28A0A0C4DH34 117 aa14.37□□□□□ -0.11
COL9A3-210ENST00000472880 CRYM-AS1A6NIL9 109 aa14.37□□□□□ -0.11
COL9A3-210ENST00000472880 NXPH3O95157 252 aa14.37□□□□□ -0.11
COL9A3-210ENST00000472880 MIFP14174 115 aa14.37□□□□□ -0.11
COL9A3-210ENST00000472880 C4BPBP20851 252 aa14.37□□□□□ -0.11
COL9A3-210ENST00000472880 FAUP35544 74 aaKnown RBP14.37□□□□□ -0.11
COL9A3-210ENST00000472880 AP3S2P59780 193 aa14.37□□□□□ -0.11
COL9A3-210ENST00000472880 YPEL3P61236 119 aaPredicted RBP14.37□□□□□ -0.11
COL9A3-210ENST00000472880 ACTL10Q5JWF8 245 aa14.37□□□□□ -0.11
COL9A3-210ENST00000472880 ETFRF1Q6IPR1 90 aa14.37□□□□□ -0.11
COL9A3-210ENST00000472880 TOMM5Q8N4H5 51 aa14.37□□□□□ -0.11
COL9A3-210ENST00000472880 HRH4Q9H3N8 390 aa14.37□□□□□ -0.11
COL9A3-210ENST00000472880 NDUFA13Q9P0J0 144 aa14.37□□□□□ -0.11
COL9A3-210ENST00000472880 CACFD1Q9UGQ2 172 aa14.37□□□□□ -0.11
COL9A3-210ENST00000472880 U3KQE9 123 aa14.37□□□□□ -0.11
COL9A3-210ENST00000472880 C11orf94C9JXX5 98 aa14.36□□□□□ -0.11
COL9A3-210ENST00000472880 IL4P05112 153 aa14.36□□□□□ -0.11
COL9A3-210ENST00000472880 GIG44P09565 113 aaPredicted RBP14.36□□□□□ -0.11
COL9A3-210ENST00000472880 NPY1RP25929 384 aa14.36□□□□□ -0.11
COL9A3-210ENST00000472880 AP2S1P53680 142 aaPredicted RBP14.36□□□□□ -0.11
COL9A3-210ENST00000472880 PSMG4Q5JS54 123 aa14.36□□□□□ -0.11
COL9A3-210ENST00000472880 SPANXN2Q5MJ10 180 aa14.36□□□□□ -0.11
COL9A3-210ENST00000472880 C16orf54Q6UWD8 224 aa14.36□□□□□ -0.11
COL9A3-210ENST00000472880 NOXA1Q86UR1 476 aa14.36□□□□□ -0.11
COL9A3-210ENST00000472880 GLMPQ8WWB7 406 aa14.36□□□□□ -0.11
COL9A3-210ENST00000472880 SCGB3A2Q96PL1 93 aa14.36□□□□□ -0.11
COL9A3-210ENST00000472880 IGLL5B9A064 214 aa14.35□□□□□ -0.11
COL9A3-210ENST00000472880 SULT1A3P0DMM9 295 aa14.35□□□□□ -0.11
COL9A3-210ENST00000472880 SULT1A4P0DMN0 295 aa14.35□□□□□ -0.11
COL9A3-210ENST00000472880 CENPSQ8N2Z9 138 aa14.35□□□□□ -0.11
COL9A3-210ENST00000472880 ACY3Q96HD9 319 aa14.35□□□□□ -0.11
COL9A3-210ENST00000472880 SRRQ9GZT4 340 aa14.35□□□□□ -0.11
COL9A3-210ENST00000472880 TMEM56-RWDD3S4R434 201 aa14.35□□□□□ -0.11
COL9A3-210ENST00000472880 KMT2AQ03164 3969 aa14.34□□□□□ -0.11
COL9A3-210ENST00000472880 ZNF705EA8MWA4 302 aaPredicted RBP14.34□□□□□ -0.11
COL9A3-210ENST00000472880 RBMY1A1P0DJD3 496 aaKnown RBP14.34□□□□□ -0.11
COL9A3-210ENST00000472880 RBMY1CP0DJD4 496 aa14.34□□□□□ -0.11
COL9A3-210ENST00000472880 RBMY1FQ15415 496 aaKnown RBP14.34□□□□□ -0.11
COL9A3-210ENST00000472880 USF2Q15853 346 aaPredicted RBP14.34□□□□□ -0.11
COL9A3-210ENST00000472880 TMEM170AQ8WVE7 144 aa14.34□□□□□ -0.11
COL9A3-210ENST00000472880 DEDD2Q8WXF8 326 aa14.34□□□□□ -0.11
COL9A3-210ENST00000472880 IL22RA2Q969J5 263 aa14.34□□□□□ -0.11
COL9A3-210ENST00000472880 CLEC5AQ9NY25 188 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms