RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 TRAV30A0A087WSZ9 112 aa11.57□□□□□ -0.56
CCDC88B-205ENST00000472524 NPY1RP25929 384 aa11.57□□□□□ -0.56
CCDC88B-205ENST00000472524 DEFB131AP59861 70 aa11.57□□□□□ -0.56
CCDC88B-205ENST00000472524 SUPT4H1P63272 117 aaKnown RBP11.57□□□□□ -0.56
CCDC88B-205ENST00000472524 TNFRSF9Q07011 255 aa11.57□□□□□ -0.56
CCDC88B-205ENST00000472524 PYDC2Q56P42 97 aa11.57□□□□□ -0.56
CCDC88B-205ENST00000472524 LEMD1Q68G75 181 aa11.57□□□□□ -0.56
CCDC88B-205ENST00000472524 PRSS54Q6PEW0 395 aa11.57□□□□□ -0.56
CCDC88B-205ENST00000472524 LYZL2Q7Z4W2 148 aa11.57□□□□□ -0.56
CCDC88B-205ENST00000472524 FAM24BQ8N5W8 94 aa11.57□□□□□ -0.56
CCDC88B-205ENST00000472524 STXBP6Q8NFX7 210 aa11.57□□□□□ -0.56
CCDC88B-205ENST00000472524 OR1S2Q8NGQ3 325 aa11.57□□□□□ -0.56
CCDC88B-205ENST00000472524 RNASEH2CQ8TDP1 164 aaKnown RBP11.57□□□□□ -0.56
CCDC88B-205ENST00000472524 TMEM170AQ8WVE7 144 aa11.57□□□□□ -0.56
CCDC88B-205ENST00000472524 NARS2Q96I59 477 aaKnown RBP11.57□□□□□ -0.56
CCDC88B-205ENST00000472524 CSTL1Q9H114 145 aa11.57□□□□□ -0.56
CCDC88B-205ENST00000472524 MPTX1A8MV57 137 aa11.56□□□□□ -0.56
CCDC88B-205ENST00000472524 IGLC1P0CG04 106 aa11.56□□□□□ -0.56
CCDC88B-205ENST00000472524 SLC25A4P12235 298 aa11.56□□□□□ -0.56
CCDC88B-205ENST00000472524 ANXA3P12429 323 aa11.56□□□□□ -0.56
CCDC88B-205ENST00000472524 CRYBB3P26998 211 aa11.56□□□□□ -0.56
CCDC88B-205ENST00000472524 OR10J1P30954 320 aa11.56□□□□□ -0.56
CCDC88B-205ENST00000472524 FAUP35544 74 aaKnown RBP11.56□□□□□ -0.56
CCDC88B-205ENST00000472524 P2RY1P47900 373 aa11.56□□□□□ -0.56
CCDC88B-205ENST00000472524 KLF9Q13886 244 aaPredicted RBP11.56□□□□□ -0.56
CCDC88B-205ENST00000472524 SMCO1Q147U7 214 aa11.56□□□□□ -0.56
CCDC88B-205ENST00000472524 TMED4Q7Z7H5 227 aa11.56□□□□□ -0.56
CCDC88B-205ENST00000472524 LINC00476Q8WZB0 136 aa11.56□□□□□ -0.56
CCDC88B-205ENST00000472524 TRIM63Q969Q1 353 aa11.56□□□□□ -0.56
CCDC88B-205ENST00000472524 TRAV2A0A0B4J234 112 aa11.55□□□□□ -0.56
CCDC88B-205ENST00000472524 A0A0B4J2A0 478 aa11.55□□□□□ -0.56
CCDC88B-205ENST00000472524 IFNA10P01566 189 aa11.55□□□□□ -0.56
CCDC88B-205ENST00000472524 CCR6P51684 374 aa11.55□□□□□ -0.56
CCDC88B-205ENST00000472524 RBMS2Q15434 407 aaKnown RBP11.55□□□□□ -0.56
CCDC88B-205ENST00000472524 NMSQ5H8A3 153 aa11.55□□□□□ -0.56
CCDC88B-205ENST00000472524 ETFRF1Q6IPR1 90 aa11.55□□□□□ -0.56
CCDC88B-205ENST00000472524 LGI3Q8N145 548 aa11.55□□□□□ -0.56
CCDC88B-205ENST00000472524 TOMM5Q8N4H5 51 aa11.55□□□□□ -0.56
CCDC88B-205ENST00000472524 Q8WTZ3 238 aa11.55□□□□□ -0.56
CCDC88B-205ENST00000472524 ACY3Q96HD9 319 aa11.55□□□□□ -0.56
CCDC88B-205ENST00000472524 RBKSQ9H477 322 aa11.55□□□□□ -0.56
CCDC88B-205ENST00000472524 CACFD1Q9UGQ2 172 aa11.55□□□□□ -0.56
CCDC88B-205ENST00000472524 SHPKQ9UHJ6 478 aa11.55□□□□□ -0.56
CCDC88B-205ENST00000472524 V9GYH0 126 aa11.55□□□□□ -0.56
CCDC88B-205ENST00000472524 CA1P00915 261 aaPredicted RBP11.54□□□□□ -0.56
CCDC88B-205ENST00000472524 S100A5P33763 92 aa11.54□□□□□ -0.56
CCDC88B-205ENST00000472524 AP3S2P59780 193 aa11.54□□□□□ -0.56
CCDC88B-205ENST00000472524 SRPXP78539 464 aa11.54□□□□□ -0.56
CCDC88B-205ENST00000472524 NOXA1Q86UR1 476 aa11.54□□□□□ -0.56
CCDC88B-205ENST00000472524 OR1S1Q8NH92 325 aa11.54□□□□□ -0.56
CCDC88B-205ENST00000472524 DTD1Q8TEA8 209 aa11.54□□□□□ -0.56
CCDC88B-205ENST00000472524 NPIPB3Q92617 1050 aa11.54□□□□□ -0.56
CCDC88B-205ENST00000472524 GRAMD2BQ96HH9 432 aa11.54□□□□□ -0.56
CCDC88B-205ENST00000472524 HSPB7Q9UBY9 170 aa11.54□□□□□ -0.56
CCDC88B-205ENST00000472524 K7EQG2 157 aa11.53□□□□□ -0.56
CCDC88B-205ENST00000472524 LY6G6CO95867 125 aa11.53□□□□□ -0.56
CCDC88B-205ENST00000472524 IL4P05112 153 aa11.53□□□□□ -0.56
CCDC88B-205ENST00000472524 HNRNPCP07910 306 aaKnown RBP eCLIP11.53□□□□□ -0.56
CCDC88B-205ENST00000472524 ZNF688P0C7X2 276 aa11.53□□□□□ -0.56
CCDC88B-205ENST00000472524 ZNF79Q15937 498 aa11.53□□□□□ -0.56
CCDC88B-205ENST00000472524 STHQ8IWL8 128 aa11.53□□□□□ -0.56
CCDC88B-205ENST00000472524 TMEM217Q8N7C4 229 aa11.53□□□□□ -0.56
CCDC88B-205ENST00000472524 GATAD1Q8WUU5 269 aa11.53□□□□□ -0.56
CCDC88B-205ENST00000472524 RARRES2Q99969 163 aa11.53□□□□□ -0.56
CCDC88B-205ENST00000472524 NUPR2A6NF83 97 aa11.52□□□□□ -0.57
CCDC88B-205ENST00000472524 IFNA4P05014 189 aa11.52□□□□□ -0.57
CCDC88B-205ENST00000472524 VAMP1P23763 118 aa11.52□□□□□ -0.57
CCDC88B-205ENST00000472524 YPEL3P61236 119 aaPredicted RBP11.52□□□□□ -0.57
CCDC88B-205ENST00000472524 USF2Q15853 346 aaPredicted RBP11.52□□□□□ -0.57
CCDC88B-205ENST00000472524 U3KQ87 197 aa11.52□□□□□ -0.57
CCDC88B-205ENST00000472524 TOMM40O96008 361 aa11.51□□□□□ -0.57
CCDC88B-205ENST00000472524 EIF2B2P49770 351 aaKnown RBP11.51□□□□□ -0.57
CCDC88B-205ENST00000472524 TMEM128Q5BJH2 165 aa11.51□□□□□ -0.57
CCDC88B-205ENST00000472524 OR11H2Q8NH07 326 aa11.51□□□□□ -0.57
CCDC88B-205ENST00000472524 U3KQE9 123 aa11.51□□□□□ -0.57
CCDC88B-205ENST00000472524 HELTA6NFD8 242 aa11.5□□□□□ -0.57
CCDC88B-205ENST00000472524 KNCNA6PVL3 124 aa11.5□□□□□ -0.57
CCDC88B-205ENST00000472524 RD3LP0DJH9 198 aa11.5□□□□□ -0.57
CCDC88B-205ENST00000472524 IAPPP10997 89 aa11.5□□□□□ -0.57
CCDC88B-205ENST00000472524 ATF4P18848 351 aaPredicted RBP11.5□□□□□ -0.57
CCDC88B-205ENST00000472524 DHRS2Q13268 280 aa11.5□□□□□ -0.57
CCDC88B-205ENST00000472524 CEMP1Q6PRD7 247 aaPredicted RBP11.5□□□□□ -0.57
CCDC88B-205ENST00000472524 C16orf54Q6UWD8 224 aa11.5□□□□□ -0.57
CCDC88B-205ENST00000472524 CCDC190Q86UF4 302 aa11.5□□□□□ -0.57
CCDC88B-205ENST00000472524 DCANP1Q8TF63 244 aa11.5□□□□□ -0.57
CCDC88B-205ENST00000472524 GLMPQ8WWB7 406 aa11.5□□□□□ -0.57
CCDC88B-205ENST00000472524 RBM38Q9H0Z9 239 aaKnown RBP11.5□□□□□ -0.57
CCDC88B-205ENST00000472524 PIGBOS1A0A0B4J2F0 54 aa11.49□□□□□ -0.57
CCDC88B-205ENST00000472524 DUXBA0A1W2PPF3 345 aa11.49□□□□□ -0.57
CCDC88B-205ENST00000472524 PSG1P11464 419 aa11.49□□□□□ -0.57
CCDC88B-205ENST00000472524 OR51G1Q8NGK1 321 aa11.49□□□□□ -0.57
CCDC88B-205ENST00000472524 SLC35E1Q96K37 410 aa11.49□□□□□ -0.57
CCDC88B-205ENST00000472524 SLC25A21Q9BQT8 299 aaPredicted RBP11.49□□□□□ -0.57
CCDC88B-205ENST00000472524 PAIP2BQ9ULR5 123 aaKnown RBP11.49□□□□□ -0.57
CCDC88B-205ENST00000472524 ZFP92A6NM28 416 aa11.48□□□□□ -0.57
CCDC88B-205ENST00000472524 DEFB4AO15263 64 aa11.48□□□□□ -0.57
CCDC88B-205ENST00000472524 PITX3O75364 302 aa11.48□□□□□ -0.57
CCDC88B-205ENST00000472524 SFT2D2O95562 160 aa11.48□□□□□ -0.57
CCDC88B-205ENST00000472524 PPP1R1AQ13522 171 aa11.48□□□□□ -0.57
CCDC88B-205ENST00000472524 PSMG4Q5JS54 123 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms