RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PF4V1P10720 104 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 COL9A1P20849 921 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-209ENST00000472056 A0A0J9YW62 118 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 HRKO00198 91 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 SPINT1O43278 529 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 FGF11Q92914 225 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 LYPD1Q8N2G4 141 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 CCL13Q99616 98 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 RNF126Q9BV68 326 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 OTOGLQ3ZCN5 2332 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 PLSCR4Q9NRQ2 329 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 TRAV14DV4A0A0A6YYC5 116 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 CMC4P56277 68 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-209ENST00000472056 Q5BKY6 102 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 C21orf62Q9NYP8 219 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 PPIAL4CA0A0B4J2A2 164 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 PPIAL4GP0DN37 164 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 CFHR5Q9BXR6 569 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 EPDR1Q9UM22 224 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 IGLV3-21P80748 117 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-209ENST00000472056 TMEM155Q4W5P6 130 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 IGKV1-8A0A0C4DH67 115 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 M0R381 172 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 TDGF1P13385 188 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 CCL1P22362 96 aa11.22□□□□□ -0.61
COL6A3-209ENST00000472056 SEPSECSQ9HD40 501 aaKnown RBP11.22□□□□□ -0.61
COL6A3-209ENST00000472056 VKORC1Q9BQB6 163 aa11.21□□□□□ -0.61
COL6A3-209ENST00000472056 IGKV3OR2-268A0A0C4DH90 116 aa11.21□□□□□ -0.61
COL6A3-209ENST00000472056 PEBP1P30086 187 aaKnown RBP11.21□□□□□ -0.61
COL6A3-209ENST00000472056 ZNF501Q96CX3 271 aaPredicted RBP11.21□□□□□ -0.61
COL6A3-209ENST00000472056 TET2Q6N021 2002 aaPredicted RBP11.21□□□□□ -0.61
COL6A3-209ENST00000472056 SMIM10L1P0DMW3 83 aa11.21□□□□□ -0.61
COL6A3-209ENST00000472056 SMIM10Q96HG1 83 aa11.21□□□□□ -0.61
COL6A3-209ENST00000472056 WDR90Q96KV7 1748 aa11.21□□□□□ -0.62
COL6A3-209ENST00000472056 NTN1O95631 604 aa11.21□□□□□ -0.62
COL6A3-209ENST00000472056 RNF115Q9Y4L5 304 aa11.21□□□□□ -0.62
COL6A3-209ENST00000472056 A0A0G2JK05 382 aa11.21□□□□□ -0.62
COL6A3-209ENST00000472056 DUSP14O95147 198 aaKnown RBP11.21□□□□□ -0.62
COL6A3-209ENST00000472056 FAM90A2PQ658T7 463 aa11.21□□□□□ -0.62
COL6A3-209ENST00000472056 DUX5Q96PT3 197 aa11.21□□□□□ -0.62
COL6A3-209ENST00000472056 THY1P04216 161 aa11.21□□□□□ -0.62
COL6A3-209ENST00000472056 TRGV11A0A075B6L2 103 aa11.2□□□□□ -0.62
COL6A3-209ENST00000472056 LOC105371242A0A075B767 164 aa11.2□□□□□ -0.62
COL6A3-209ENST00000472056 POU2AF1Q16633 256 aa11.2□□□□□ -0.62
COL6A3-209ENST00000472056 PCNX3Q9H6A9 2034 aa11.2□□□□□ -0.62
COL6A3-209ENST00000472056 LHX2P50458 406 aa11.2□□□□□ -0.62
COL6A3-209ENST00000472056 ZNF205O95201 554 aa11.2□□□□□ -0.62
COL6A3-209ENST00000472056 TMEM42Q69YG0 159 aa11.2□□□□□ -0.62
COL6A3-209ENST00000472056 C20orf144Q9BQM9 153 aa11.2□□□□□ -0.62
COL6A3-209ENST00000472056 VWC2LB2RUY7 222 aa11.2□□□□□ -0.62
COL6A3-209ENST00000472056 TRAV5A0A0B4J249 113 aa11.19□□□□□ -0.62
COL6A3-209ENST00000472056 IQCF6A8MYZ5 107 aa11.19□□□□□ -0.62
COL6A3-209ENST00000472056 KIAA1671Q9BY89 1806 aa11.19□□□□□ -0.62
COL6A3-209ENST00000472056 ZNF48Q96MX3 618 aaPredicted RBP11.19□□□□□ -0.62
COL6A3-209ENST00000472056 DPM3Q9P2X0 92 aa11.19□□□□□ -0.62
COL6A3-209ENST00000472056 HILPDAQ9Y5L2 63 aa11.19□□□□□ -0.62
COL6A3-209ENST00000472056 REPIN1Q9BWE0 567 aaKnown RBP11.19□□□□□ -0.62
COL6A3-209ENST00000472056 FAM231BA6NCW3 169 aa11.19□□□□□ -0.62
COL6A3-209ENST00000472056 H3BMM0 161 aa11.19□□□□□ -0.62
COL6A3-209ENST00000472056 MLNRO43193 412 aa11.19□□□□□ -0.62
COL6A3-209ENST00000472056 C8orf46Q8TAG6 207 aa11.19□□□□□ -0.62
COL6A3-209ENST00000472056 SPINK8P0C7L1 97 aa11.19□□□□□ -0.62
COL6A3-209ENST00000472056 GZMBP10144 247 aa11.19□□□□□ -0.62
COL6A3-209ENST00000472056 CCL8P80075 99 aa11.19□□□□□ -0.62
COL6A3-209ENST00000472056 PMS2CLQ68D20 193 aa11.19□□□□□ -0.62
COL6A3-209ENST00000472056 TRAV2A0A0B4J234 112 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 LDLRAD4O15165 306 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 ZNF497Q6ZNH5 498 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 ITLN1Q8WWA0 313 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 PEMTQ9UBM1 199 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 BTCP35070 178 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 ZIC4Q8N9L1 334 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 IGHV3OR16-12A0A075B7B8 117 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 IGFBP2P18065 325 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 SPEM2Q0P670 501 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 TGIF1Q15583 401 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 LEPROTO15243 131 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 ID3Q02535 119 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 SPATA31B1PQ5VZV4 182 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 C16orf47Q6ZP98 133 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-209ENST00000472056 CST9LQ9H4G1 147 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 TOMM40O96008 361 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 TOMM7Q9P0U1 55 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 A8MWP6 167 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 ITGB1BP1O14713 200 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 TMEM258P61165 79 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 ATRAIDQ6UW56 229 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 FAM89BQ8N5H3 189 aa11.18□□□□□ -0.62
COL6A3-209ENST00000472056 PDE6HQ13956 83 aa11.17□□□□□ -0.62
COL6A3-209ENST00000472056 EFNB3Q15768 340 aa11.17□□□□□ -0.62
COL6A3-209ENST00000472056 C9orf153Q5TBE3 101 aa11.17□□□□□ -0.62
COL6A3-209ENST00000472056 FOXA2Q9Y261 457 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-209ENST00000472056 IGHV3-21A0A0B4J1V1 117 aa11.17□□□□□ -0.62
COL6A3-209ENST00000472056 RPL32P62910 135 aaKnown RBP11.17□□□□□ -0.62
COL6A3-209ENST00000472056 TPTE2P1Q5T6R2 138 aa11.17□□□□□ -0.62
COL6A3-209ENST00000472056 RNASE7Q9H1E1 156 aaKnown RBP11.17□□□□□ -0.62
COL6A3-209ENST00000472056 CSPG4Q6UVK1 2322 aa11.17□□□□□ -0.62
COL6A3-209ENST00000472056 SRSF8Q9BRL6 282 aaKnown RBP11.17□□□□□ -0.62
COL6A3-209ENST00000472056 CUL9Q8IWT3 2517 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms