RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 U3KQE9 123 aa11.95□□□□□ -0.5
COL9A3-208ENST00000469802 K7EQG2 157 aa11.94□□□□□ -0.5
COL9A3-208ENST00000469802 SLC25A4P12235 298 aa11.94□□□□□ -0.5
COL9A3-208ENST00000469802 P2RY1P47900 373 aa11.94□□□□□ -0.5
COL9A3-208ENST00000469802 RND2P52198 227 aa11.94□□□□□ -0.5
COL9A3-208ENST00000469802 DEFB131AP59861 70 aa11.94□□□□□ -0.5
COL9A3-208ENST00000469802 SUPT4H1P63272 117 aaKnown RBP11.94□□□□□ -0.5
COL9A3-208ENST00000469802 OR1S2Q8NGQ3 325 aa11.94□□□□□ -0.5
COL9A3-208ENST00000469802 C11orf68Q9H3H3 251 aaKnown RBP11.94□□□□□ -0.5
COL9A3-208ENST00000469802 SCP2D1Q9UJQ7 156 aa11.94□□□□□ -0.5
COL9A3-208ENST00000469802 CEBPZOSA8MTT3 80 aa11.93□□□□□ -0.5
COL9A3-208ENST00000469802 DNASE2O00115 360 aaPredicted RBP11.93□□□□□ -0.5
COL9A3-208ENST00000469802 SULT1A3P0DMM9 295 aa11.93□□□□□ -0.5
COL9A3-208ENST00000469802 SULT1A4P0DMN0 295 aa11.93□□□□□ -0.5
COL9A3-208ENST00000469802 TNFSF8P32971 234 aa11.93□□□□□ -0.5
COL9A3-208ENST00000469802 LEMD1Q68G75 181 aa11.93□□□□□ -0.5
COL9A3-208ENST00000469802 DCANP1Q8TF63 244 aa11.93□□□□□ -0.5
COL9A3-208ENST00000469802 GRAMD2BQ96HH9 432 aa11.93□□□□□ -0.5
COL9A3-208ENST00000469802 PRR13Q9NZ81 148 aa11.93□□□□□ -0.5
COL9A3-208ENST00000469802 CACFD1Q9UGQ2 172 aa11.93□□□□□ -0.5
COL9A3-208ENST00000469802 A0A0B4J2A0 478 aa11.92□□□□□ -0.5
COL9A3-208ENST00000469802 CA1P00915 261 aaPredicted RBP11.92□□□□□ -0.5
COL9A3-208ENST00000469802 NPY1RP25929 384 aa11.92□□□□□ -0.5
COL9A3-208ENST00000469802 YPEL3P61236 119 aaPredicted RBP11.92□□□□□ -0.5
COL9A3-208ENST00000469802 RPL11P62913 178 aaKnown RBP11.92□□□□□ -0.5
COL9A3-208ENST00000469802 RBMS2Q15434 407 aaKnown RBP11.92□□□□□ -0.5
COL9A3-208ENST00000469802 TRIM63Q969Q1 353 aa11.92□□□□□ -0.5
COL9A3-208ENST00000469802 SCGB3A2Q96PL1 93 aa11.92□□□□□ -0.5
COL9A3-208ENST00000469802 RARRES2Q99969 163 aa11.92□□□□□ -0.5
COL9A3-208ENST00000469802 HSPB7Q9UBY9 170 aa11.92□□□□□ -0.5
COL9A3-208ENST00000469802 SHPKQ9UHJ6 478 aa11.92□□□□□ -0.5
COL9A3-208ENST00000469802 RABAC1Q9UI14 185 aa11.92□□□□□ -0.5
COL9A3-208ENST00000469802 KCNIP3Q9Y2W7 256 aa11.92□□□□□ -0.5
COL9A3-208ENST00000469802 NXPH3O95157 252 aa11.91□□□□□ -0.5
COL9A3-208ENST00000469802 OR10J1P30954 320 aa11.91□□□□□ -0.5
COL9A3-208ENST00000469802 TRPT1Q86TN4 253 aaKnown RBP11.91□□□□□ -0.5
COL9A3-208ENST00000469802 STXBP6Q8NFX7 210 aa11.91□□□□□ -0.5
COL9A3-208ENST00000469802 OR11H2Q8NH07 326 aa11.91□□□□□ -0.5
COL9A3-208ENST00000469802 GLMPQ8WWB7 406 aa11.91□□□□□ -0.5
COL9A3-208ENST00000469802 MCUBQ9NWR8 336 aa11.91□□□□□ -0.5
COL9A3-208ENST00000469802 KMT2AQ03164 3969 aa11.91□□□□□ -0.5
COL9A3-208ENST00000469802 FABP12A6NFH5 140 aa11.9□□□□□ -0.5
COL9A3-208ENST00000469802 HNRNPCP07910 306 aaKnown RBP eCLIP11.9□□□□□ -0.51e-8■■■□□ 15.9
COL9A3-208ENST00000469802 GIG44P09565 113 aaPredicted RBP11.9□□□□□ -0.5
COL9A3-208ENST00000469802 CCR6P51684 374 aa11.9□□□□□ -0.5
COL9A3-208ENST00000469802 KLF9Q13886 244 aaPredicted RBP11.9□□□□□ -0.5
COL9A3-208ENST00000469802 SMCO1Q147U7 214 aa11.9□□□□□ -0.5
COL9A3-208ENST00000469802 USF2Q15853 346 aaPredicted RBP11.9□□□□□ -0.5
COL9A3-208ENST00000469802 ETFRF1Q6IPR1 90 aa11.9□□□□□ -0.5
COL9A3-208ENST00000469802 C16orf54Q6UWD8 224 aa11.9□□□□□ -0.5
COL9A3-208ENST00000469802 LYZL2Q7Z4W2 148 aa11.9□□□□□ -0.5
COL9A3-208ENST00000469802 MCFD2Q8NI22 146 aa11.9□□□□□ -0.5
COL9A3-208ENST00000469802 NARS2Q96I59 477 aaKnown RBP11.9□□□□□ -0.5
COL9A3-208ENST00000469802 KLK5Q9Y337 293 aaPredicted RBP11.9□□□□□ -0.5
COL9A3-208ENST00000469802 TOMM40O96008 361 aa11.89□□□□□ -0.51
COL9A3-208ENST00000469802 ZNF688P0C7X2 276 aa11.89□□□□□ -0.51
COL9A3-208ENST00000469802 AKR1C4P17516 323 aa11.89□□□□□ -0.51
COL9A3-208ENST00000469802 SRPXP78539 464 aa11.89□□□□□ -0.51
COL9A3-208ENST00000469802 NOXA1Q86UR1 476 aa11.89□□□□□ -0.51
COL9A3-208ENST00000469802 STHQ8IWL8 128 aa11.89□□□□□ -0.51
COL9A3-208ENST00000469802 Q8WTZ3 238 aa11.89□□□□□ -0.51
COL9A3-208ENST00000469802 PHLDA1Q8WV24 401 aaPredicted RBP11.89□□□□□ -0.51
COL9A3-208ENST00000469802 NPIPB3Q92617 1050 aa11.89□□□□□ -0.51
COL9A3-208ENST00000469802 U3KQ87 197 aa11.89□□□□□ -0.51
COL9A3-208ENST00000469802 V9GYH0 126 aa11.89□□□□□ -0.51
COL9A3-208ENST00000469802 HELTA6NFD8 242 aa11.88□□□□□ -0.51
COL9A3-208ENST00000469802 IL4P05112 153 aa11.88□□□□□ -0.51
COL9A3-208ENST00000469802 LGI3Q8N145 548 aa11.88□□□□□ -0.51
COL9A3-208ENST00000469802 DTD1Q8TEA8 209 aa11.88□□□□□ -0.51
COL9A3-208ENST00000469802 ACY3Q96HD9 319 aa11.88□□□□□ -0.51
COL9A3-208ENST00000469802 RBKSQ9H477 322 aa11.88□□□□□ -0.51
COL9A3-208ENST00000469802 DUXBA0A1W2PPF3 345 aa11.87□□□□□ -0.51
COL9A3-208ENST00000469802 CCDC160A6NGH7 325 aa11.87□□□□□ -0.51
COL9A3-208ENST00000469802 PITX3O75364 302 aa11.87□□□□□ -0.51
COL9A3-208ENST00000469802 LY6G6CO95867 125 aa11.87□□□□□ -0.51
COL9A3-208ENST00000469802 IFNA10P01566 189 aa11.87□□□□□ -0.51
COL9A3-208ENST00000469802 SPP1P10451 314 aa11.87□□□□□ -0.51
COL9A3-208ENST00000469802 ANXA3P12429 323 aa11.87□□□□□ -0.51
COL9A3-208ENST00000469802 C4BPBP20851 252 aa11.87□□□□□ -0.51
COL9A3-208ENST00000469802 EIF2B2P49770 351 aaKnown RBP11.87□□□□□ -0.51
COL9A3-208ENST00000469802 ZNF79Q15937 498 aa11.87□□□□□ -0.51
COL9A3-208ENST00000469802 TMEM41BQ5BJD5 291 aa11.87□□□□□ -0.51
COL9A3-208ENST00000469802 Q8NAQ8 132 aa11.87□□□□□ -0.51
COL9A3-208ENST00000469802 FRAS1Q86XX4 4008 aa11.86□□□□□ -0.51
COL9A3-208ENST00000469802 KNCNA6PVL3 124 aa11.86□□□□□ -0.51
COL9A3-208ENST00000469802 BUB3O43684 328 aa11.86□□□□□ -0.51
COL9A3-208ENST00000469802 PSG1P11464 419 aa11.86□□□□□ -0.51
COL9A3-208ENST00000469802 FAUP35544 74 aaKnown RBP11.86□□□□□ -0.51
COL9A3-208ENST00000469802 AP2S1P53680 142 aaPredicted RBP11.86□□□□□ -0.51
COL9A3-208ENST00000469802 ATP5IP56385 69 aaPredicted RBP11.86□□□□□ -0.51
COL9A3-208ENST00000469802 NANOS2P60321 138 aaKnown RBP11.86□□□□□ -0.51
COL9A3-208ENST00000469802 MORN3Q6PF18 240 aaPredicted RBP11.86□□□□□ -0.51
COL9A3-208ENST00000469802 C11orf45Q8TAV5 145 aa11.86□□□□□ -0.51
COL9A3-208ENST00000469802 MFFQ9GZY8 342 aa11.86□□□□□ -0.51
COL9A3-208ENST00000469802 IGKV1D-37A0A075B6S9 117 aa11.85□□□□□ -0.51
COL9A3-208ENST00000469802 PIGBOS1A0A0B4J2F0 54 aa11.85□□□□□ -0.51
COL9A3-208ENST00000469802 FAM90A26D6RGX4 464 aa11.85□□□□□ -0.51
COL9A3-208ENST00000469802 RD3LP0DJH9 198 aa11.85□□□□□ -0.51
COL9A3-208ENST00000469802 AP3S2P59780 193 aa11.85□□□□□ -0.51
COL9A3-208ENST00000469802 DHRS2Q13268 280 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms