RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 DNAH17Q9UFH2 4485 aa11.65□□□□□ -0.54
COL7A1-204ENST00000462475 PCLOQ9Y6V0 5065 aa11.64□□□□□ -0.55
COL7A1-204ENST00000462475 RAB3DO95716 219 aa11.64□□□□□ -0.55
COL7A1-204ENST00000462475 OR5AC1P0C628 307 aa11.64□□□□□ -0.55
COL7A1-204ENST00000462475 RND2P52198 227 aa11.64□□□□□ -0.55
COL7A1-204ENST00000462475 DHRS2Q13268 280 aa11.64□□□□□ -0.55
COL7A1-204ENST00000462475 PSMG4Q5JS54 123 aa11.64□□□□□ -0.55
COL7A1-204ENST00000462475 FAAP20Q6NZ36 180 aa11.64□□□□□ -0.55
COL7A1-204ENST00000462475 PRSS54Q6PEW0 395 aa11.64□□□□□ -0.55
COL7A1-204ENST00000462475 TMEM229BQ8NBD8 167 aa11.64□□□□□ -0.55
COL7A1-204ENST00000462475 CSNK1G2-AS1Q8NCQ2 148 aa11.64□□□□□ -0.55
COL7A1-204ENST00000462475 GLMPQ8WWB7 406 aa11.64□□□□□ -0.55
COL7A1-204ENST00000462475 TMEM222Q9H0R3 208 aa11.64□□□□□ -0.55
COL7A1-204ENST00000462475 RBM38Q9H0Z9 239 aaKnown RBP11.64□□□□□ -0.55
COL7A1-204ENST00000462475 CELA1Q9UNI1 258 aa11.64□□□□□ -0.55
COL7A1-204ENST00000462475 IGHV4-4A0A075B6R2 117 aa11.63□□□□□ -0.55
COL7A1-204ENST00000462475 TRAV30A0A087WSZ9 112 aa11.63□□□□□ -0.55
COL7A1-204ENST00000462475 TRAV10A0A0B4J240 114 aa11.63□□□□□ -0.55
COL7A1-204ENST00000462475 RPS10-NUDT3A0A1W2PQS6 291 aa11.63□□□□□ -0.55
COL7A1-204ENST00000462475 CDS2O95674 445 aa11.63□□□□□ -0.55
COL7A1-204ENST00000462475 HNRNPCP07910 306 aaKnown RBP eCLIP11.63□□□□□ -0.55
COL7A1-204ENST00000462475 HTR2BP41595 481 aa11.63□□□□□ -0.55
COL7A1-204ENST00000462475 TAS2R19P59542 299 aa11.63□□□□□ -0.55
COL7A1-204ENST00000462475 CTF1Q16619 201 aa11.63□□□□□ -0.55
COL7A1-204ENST00000462475 C16orf54Q6UWD8 224 aa11.63□□□□□ -0.55
COL7A1-204ENST00000462475 FAM219AQ8IW50 185 aa11.63□□□□□ -0.55
COL7A1-204ENST00000462475 OR1S2Q8NGQ3 325 aa11.63□□□□□ -0.55
COL7A1-204ENST00000462475 OR52E5Q8NH55 327 aa11.63□□□□□ -0.55
COL7A1-204ENST00000462475 TMEM170AQ8WVE7 144 aa11.63□□□□□ -0.55
COL7A1-204ENST00000462475 AP3S1Q92572 193 aa11.63□□□□□ -0.55
COL7A1-204ENST00000462475 CACNG5Q9UF02 275 aa11.63□□□□□ -0.55
COL7A1-204ENST00000462475 TBC1D24Q9ULP9 559 aa11.63□□□□□ -0.55
COL7A1-204ENST00000462475 PKHD1P08F94 4074 aa11.62□□□□□ -0.55
COL7A1-204ENST00000462475 HELTA6NFD8 242 aa11.62□□□□□ -0.55
COL7A1-204ENST00000462475 CCDC160A6NGH7 325 aa11.62□□□□□ -0.55
COL7A1-204ENST00000462475 B3GALNT1O75752 331 aa11.62□□□□□ -0.55
COL7A1-204ENST00000462475 GABARAPO95166 117 aa11.62□□□□□ -0.55
COL7A1-204ENST00000462475 ZNF182P17025 639 aaPredicted RBP11.62□□□□□ -0.55
COL7A1-204ENST00000462475 OR10J1P30954 320 aa11.62□□□□□ -0.55
COL7A1-204ENST00000462475 EIF2B2P49770 351 aaKnown RBP11.62□□□□□ -0.55
COL7A1-204ENST00000462475 DHODHQ02127 395 aa11.62□□□□□ -0.55
COL7A1-204ENST00000462475 USF2Q15853 346 aaPredicted RBP11.62□□□□□ -0.55
COL7A1-204ENST00000462475 C2orf83Q53S99 150 aa11.62□□□□□ -0.55
COL7A1-204ENST00000462475 STEAP1BQ6NZ63 245 aa11.62□□□□□ -0.55
COL7A1-204ENST00000462475 SLC24A4Q8NFF2 622 aa11.62□□□□□ -0.55
COL7A1-204ENST00000462475 GLYATL2Q8WU03 294 aa11.62□□□□□ -0.55
COL7A1-204ENST00000462475 RBPMSQ93062 196 aaKnown RBP11.62□□□□□ -0.55
COL7A1-204ENST00000462475 RAB40CQ96S21 281 aa11.62□□□□□ -0.55
COL7A1-204ENST00000462475 RTBDNQ9BSG5 229 aaPredicted RBP11.62□□□□□ -0.55
COL7A1-204ENST00000462475 NAA60Q9H7X0 242 aa11.62□□□□□ -0.55
COL7A1-204ENST00000462475 HEYLQ9NQ87 328 aaPredicted RBP11.62□□□□□ -0.55
COL7A1-204ENST00000462475 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.62□□□□□ -0.55
COL7A1-204ENST00000462475 NXPH3O95157 252 aa11.61□□□□□ -0.55
COL7A1-204ENST00000462475 IL4P05112 153 aa11.61□□□□□ -0.55
COL7A1-204ENST00000462475 SLC25A4P12235 298 aa11.61□□□□□ -0.55
COL7A1-204ENST00000462475 YPEL3P61236 119 aaPredicted RBP11.61□□□□□ -0.55
COL7A1-204ENST00000462475 MEF2DQ14814 521 aa11.61□□□□□ -0.55
COL7A1-204ENST00000462475 ZNF767PQ75MW2 155 aa11.61□□□□□ -0.55
COL7A1-204ENST00000462475 CLVS1Q8IUQ0 354 aaPredicted RBP11.61□□□□□ -0.55
COL7A1-204ENST00000462475 SELENOHQ8IZQ5 122 aaKnown RBP11.61□□□□□ -0.55
COL7A1-204ENST00000462475 RNASEH2CQ8TDP1 164 aaKnown RBP11.61□□□□□ -0.55
COL7A1-204ENST00000462475 Q8WTZ3 238 aa11.61□□□□□ -0.55
COL7A1-204ENST00000462475 GPR146Q96CH1 333 aa11.61□□□□□ -0.55
COL7A1-204ENST00000462475 MIXL1Q9H2W2 232 aa11.61□□□□□ -0.55
COL7A1-204ENST00000462475 RSL24D1Q9UHA3 163 aaKnown RBP11.61□□□□□ -0.55
COL7A1-204ENST00000462475 C14orf166Q9Y224 244 aaKnown RBP11.61□□□□□ -0.55
COL7A1-204ENST00000462475 TEX13DA0A0J9YY54 714 aaPredicted RBP11.6□□□□□ -0.55
COL7A1-204ENST00000462475 CEBPZOSA8MTT3 80 aa11.6□□□□□ -0.55
COL7A1-204ENST00000462475 FAM90A26D6RGX4 464 aa11.6□□□□□ -0.55
COL7A1-204ENST00000462475 ZNF701M0R085 212 aaPredicted RBP11.6□□□□□ -0.55
COL7A1-204ENST00000462475 CNPY1Q3B7I2 92 aa11.6□□□□□ -0.55
COL7A1-204ENST00000462475 TMEM268Q5VZI3 342 aa11.6□□□□□ -0.55
COL7A1-204ENST00000462475 GABARAPH6UMI1 98 aa11.59□□□□□ -0.55
COL7A1-204ENST00000462475 NOL3O60936 208 aaKnown RBP11.59□□□□□ -0.55
COL7A1-204ENST00000462475 AP2S1P53680 142 aaPredicted RBP11.59□□□□□ -0.55
COL7A1-204ENST00000462475 TMBIM6P55061 237 aa11.59□□□□□ -0.55
COL7A1-204ENST00000462475 C12orf74Q32Q52 190 aa11.59□□□□□ -0.55
COL7A1-204ENST00000462475 GPR107Q5VW38 600 aa11.59□□□□□ -0.55
COL7A1-204ENST00000462475 C15orf40Q8WUR7 153 aa11.59□□□□□ -0.55
COL7A1-204ENST00000462475 NPIPB3Q92617 1050 aa11.59□□□□□ -0.55
COL7A1-204ENST00000462475 RNF126Q9BV68 326 aa11.59□□□□□ -0.55
COL7A1-204ENST00000462475 SCRT1Q9BWW7 348 aa11.59□□□□□ -0.55
COL7A1-204ENST00000462475 XCL2Q9UBD3 114 aa11.59□□□□□ -0.55
COL7A1-204ENST00000462475 CRYM-AS1A6NIL9 109 aa11.58□□□□□ -0.56
COL7A1-204ENST00000462475 BUB3O43684 328 aa11.58□□□□□ -0.56
COL7A1-204ENST00000462475 TOMM40O96008 361 aa11.58□□□□□ -0.56
COL7A1-204ENST00000462475 AMBPP02760 352 aa11.58□□□□□ -0.56
COL7A1-204ENST00000462475 NPY1RP25929 384 aa11.58□□□□□ -0.56
COL7A1-204ENST00000462475 SURF2Q15527 256 aaPredicted RBP11.58□□□□□ -0.56
COL7A1-204ENST00000462475 CENPSQ8N2Z9 138 aa11.58□□□□□ -0.56
COL7A1-204ENST00000462475 ACY3Q96HD9 319 aa11.58□□□□□ -0.56
COL7A1-204ENST00000462475 NRN1Q9NPD7 142 aa11.58□□□□□ -0.56
COL7A1-204ENST00000462475 PRR13Q9NZ81 148 aa11.58□□□□□ -0.56
COL7A1-204ENST00000462475 DYNC1H1Q14204 4646 aaKnown RBP11.58□□□□□ -0.56
COL7A1-204ENST00000462475 DEFB131BA0A096LNP1 70 aa11.57□□□□□ -0.56
COL7A1-204ENST00000462475 H3BMM0 161 aa11.57□□□□□ -0.56
COL7A1-204ENST00000462475 SNRPD3P62318 126 aaKnown RBP11.57□□□□□ -0.56
COL7A1-204ENST00000462475 SSBP1Q04837 148 aaKnown RBP11.57□□□□□ -0.56
COL7A1-204ENST00000462475 NMSQ5H8A3 153 aa11.57□□□□□ -0.56
COL7A1-204ENST00000462475 SIGLEC15Q6ZMC9 328 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms