RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 SRPXP78539 464 aa10.29□□□□□ -0.76
USP4-206ENST00000461553 TMEM187Q14656 261 aa10.29□□□□□ -0.76
USP4-206ENST00000461553 TIGITQ495A1 244 aa10.29□□□□□ -0.76
USP4-206ENST00000461553 NOXA1Q86UR1 476 aa10.29□□□□□ -0.76
USP4-206ENST00000461553 OR1S2Q8NGQ3 325 aa10.29□□□□□ -0.76
USP4-206ENST00000461553 RNASEH2CQ8TDP1 164 aaKnown RBP10.29□□□□□ -0.76
USP4-206ENST00000461553 GRAMD2BQ96HH9 432 aa10.29□□□□□ -0.76
USP4-206ENST00000461553 CSTL1Q9H114 145 aa10.29□□□□□ -0.76
USP4-206ENST00000461553 PRR13Q9NZ81 148 aa10.29□□□□□ -0.76
USP4-206ENST00000461553 AKR1C4P17516 323 aa10.28□□□□□ -0.76
USP4-206ENST00000461553 ATF4P18848 351 aaPredicted RBP10.28□□□□□ -0.76
USP4-206ENST00000461553 TNFSF8P32971 234 aa10.28□□□□□ -0.76
USP4-206ENST00000461553 P2RY1P47900 373 aa10.28□□□□□ -0.76
USP4-206ENST00000461553 EIF2B2P49770 351 aaKnown RBP10.28□□□□□ -0.76
USP4-206ENST00000461553 AP3S2P59780 193 aa10.28□□□□□ -0.76
USP4-206ENST00000461553 ETFRF1Q6IPR1 90 aa10.28□□□□□ -0.76
USP4-206ENST00000461553 STXBP6Q8NFX7 210 aa10.28□□□□□ -0.76
USP4-206ENST00000461553 GATAD1Q8WUU5 269 aa10.28□□□□□ -0.76
USP4-206ENST00000461553 A0A0B4J2A0 478 aa10.27□□□□□ -0.77
USP4-206ENST00000461553 PIGBOS1A0A0B4J2F0 54 aa10.27□□□□□ -0.77
USP4-206ENST00000461553 CCDC160A6NGH7 325 aa10.27□□□□□ -0.77
USP4-206ENST00000461553 CA1P00915 261 aaPredicted RBP10.27□□□□□ -0.77
USP4-206ENST00000461553 IGKV1-17P01599 117 aa10.27□□□□□ -0.77
USP4-206ENST00000461553 IGLC1P0CG04 106 aa10.27□□□□□ -0.77
USP4-206ENST00000461553 CRYBB3P26998 211 aa10.27□□□□□ -0.77
USP4-206ENST00000461553 OR10J1P30954 320 aa10.27□□□□□ -0.77
USP4-206ENST00000461553 CCR6P51684 374 aa10.27□□□□□ -0.77
USP4-206ENST00000461553 DEFB131AP59861 70 aa10.27□□□□□ -0.77
USP4-206ENST00000461553 SMCO1Q147U7 214 aa10.27□□□□□ -0.77
USP4-206ENST00000461553 MLANAQ16655 118 aa10.27□□□□□ -0.77
USP4-206ENST00000461553 LEMD1Q68G75 181 aa10.27□□□□□ -0.77
USP4-206ENST00000461553 PRSS54Q6PEW0 395 aa10.27□□□□□ -0.77
USP4-206ENST00000461553 LILRB2Q8N423 598 aa10.27□□□□□ -0.77
USP4-206ENST00000461553 SHPKQ9UHJ6 478 aa10.27□□□□□ -0.77
USP4-206ENST00000461553 BIRC6Q9NR09 4857 aa10.26□□□□□ -0.77
USP4-206ENST00000461553 IFNA10P01566 189 aa10.26□□□□□ -0.77
USP4-206ENST00000461553 EWSR1Q01844 656 aaKnown RBP eCLIP10.26□□□□□ -0.77
USP4-206ENST00000461553 PYDC2Q56P42 97 aa10.26□□□□□ -0.77
USP4-206ENST00000461553 NMSQ5H8A3 153 aa10.26□□□□□ -0.77
USP4-206ENST00000461553 STHQ8IWL8 128 aa10.26□□□□□ -0.77
USP4-206ENST00000461553 LGI3Q8N145 548 aa10.26□□□□□ -0.77
USP4-206ENST00000461553 TOMM5Q8N4H5 51 aa10.26□□□□□ -0.77
USP4-206ENST00000461553 DTD1Q8TEA8 209 aa10.26□□□□□ -0.77
USP4-206ENST00000461553 Q8WTZ3 238 aa10.26□□□□□ -0.77
USP4-206ENST00000461553 TRIM63Q969Q1 353 aa10.26□□□□□ -0.77
USP4-206ENST00000461553 SOSTQ9BQB4 213 aa10.26□□□□□ -0.77
USP4-206ENST00000461553 HELTA6NFD8 242 aa10.25□□□□□ -0.77
USP4-206ENST00000461553 HNRNPCP07910 306 aaKnown RBP eCLIP10.25□□□□□ -0.77
USP4-206ENST00000461553 S100A5P33763 92 aa10.25□□□□□ -0.77
USP4-206ENST00000461553 YPEL3P61236 119 aaPredicted RBP10.25□□□□□ -0.77
USP4-206ENST00000461553 SUPT4H1P63272 117 aaKnown RBP10.25□□□□□ -0.77
USP4-206ENST00000461553 KLF9Q13886 244 aaPredicted RBP10.25□□□□□ -0.77
USP4-206ENST00000461553 TMED4Q7Z7H5 227 aa10.25□□□□□ -0.77
USP4-206ENST00000461553 FAM24BQ8N5W8 94 aa10.25□□□□□ -0.77
USP4-206ENST00000461553 OR1S1Q8NH92 325 aa10.25□□□□□ -0.77
USP4-206ENST00000461553 TMEM170AQ8WVE7 144 aa10.25□□□□□ -0.77
USP4-206ENST00000461553 ACY3Q96HD9 319 aa10.25□□□□□ -0.77
USP4-206ENST00000461553 RARRES2Q99969 163 aa10.25□□□□□ -0.77
USP4-206ENST00000461553 HSPB7Q9UBY9 170 aa10.25□□□□□ -0.77
USP4-206ENST00000461553 U3KQ87 197 aa10.25□□□□□ -0.77
USP4-206ENST00000461553 DUXBA0A1W2PPF3 345 aa10.24□□□□□ -0.77
USP4-206ENST00000461553 K7EQG2 157 aa10.24□□□□□ -0.77
USP4-206ENST00000461553 IL4P05112 153 aa10.24□□□□□ -0.77
USP4-206ENST00000461553 ZNF688P0C7X2 276 aa10.24□□□□□ -0.77
USP4-206ENST00000461553 LYZL2Q7Z4W2 148 aa10.24□□□□□ -0.77
USP4-206ENST00000461553 OR11H2Q8NH07 326 aa10.24□□□□□ -0.77
USP4-206ENST00000461553 LINC00476Q8WZB0 136 aa10.24□□□□□ -0.77
USP4-206ENST00000461553 NPIPB3Q92617 1050 aa10.24□□□□□ -0.77
USP4-206ENST00000461553 C11orf68Q9H3H3 251 aaKnown RBP10.24□□□□□ -0.77
USP4-206ENST00000461553 RBKSQ9H477 322 aa10.24□□□□□ -0.77
USP4-206ENST00000461553 KLK5Q9Y337 293 aaPredicted RBP10.24□□□□□ -0.77
USP4-206ENST00000461553 V9GYH0 126 aa10.24□□□□□ -0.77
USP4-206ENST00000461553 TOMM40O96008 361 aa10.23□□□□□ -0.77
USP4-206ENST00000461553 IFNA4P05014 189 aa10.23□□□□□ -0.77
USP4-206ENST00000461553 VAMP1P23763 118 aa10.23□□□□□ -0.77
USP4-206ENST00000461553 DHRS2Q13268 280 aa10.23□□□□□ -0.77
USP4-206ENST00000461553 RBMS2Q15434 407 aaKnown RBP10.23□□□□□ -0.77
USP4-206ENST00000461553 TMEM128Q5BJH2 165 aa10.23□□□□□ -0.77
USP4-206ENST00000461553 CEMP1Q6PRD7 247 aaPredicted RBP10.23□□□□□ -0.77
USP4-206ENST00000461553 DEDD2Q8WXF8 326 aa10.23□□□□□ -0.77
USP4-206ENST00000461553 SPP1P10451 314 aa10.22□□□□□ -0.77
USP4-206ENST00000461553 NUP62P37198 522 aaPredicted RBP10.22□□□□□ -0.77
USP4-206ENST00000461553 AP2S1P53680 142 aaPredicted RBP10.22□□□□□ -0.77
USP4-206ENST00000461553 USF2Q15853 346 aaPredicted RBP10.22□□□□□ -0.77
USP4-206ENST00000461553 ZNF79Q15937 498 aa10.22□□□□□ -0.77
USP4-206ENST00000461553 TMEM41BQ5BJD5 291 aa10.22□□□□□ -0.77
USP4-206ENST00000461553 C16orf54Q6UWD8 224 aa10.22□□□□□ -0.77
USP4-206ENST00000461553 DCANP1Q8TF63 244 aa10.22□□□□□ -0.77
USP4-206ENST00000461553 GLMPQ8WWB7 406 aa10.22□□□□□ -0.77
USP4-206ENST00000461553 SLC35E1Q96K37 410 aa10.22□□□□□ -0.77
USP4-206ENST00000461553 MFFQ9GZY8 342 aa10.22□□□□□ -0.77
USP4-206ENST00000461553 U3KQE9 123 aa10.22□□□□□ -0.77
USP4-206ENST00000461553 KMT2AQ03164 3969 aa10.22□□□□□ -0.77
USP4-206ENST00000461553 ZFP92A6NM28 416 aa10.21□□□□□ -0.77
USP4-206ENST00000461553 LY6G6CO95867 125 aa10.21□□□□□ -0.77
USP4-206ENST00000461553 RD3LP0DJH9 198 aa10.21□□□□□ -0.77
USP4-206ENST00000461553 ATP5IP56385 69 aaPredicted RBP10.21□□□□□ -0.77
USP4-206ENST00000461553 MORN3Q6PF18 240 aaPredicted RBP10.21□□□□□ -0.77
USP4-206ENST00000461553 TRPT1Q86TN4 253 aaKnown RBP10.21□□□□□ -0.77
USP4-206ENST00000461553 RNF125Q96EQ8 232 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms