RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 IGKV3-7A0A075B6H7 116 aa13.22□□□□□ -0.29
MSH6-207ENST00000456246 DNASE2O00115 360 aaPredicted RBP13.22□□□□□ -0.29
MSH6-207ENST00000456246 IGLC1P0CG04 106 aa13.22□□□□□ -0.29
MSH6-207ENST00000456246 CRYBB3P26998 211 aa13.22□□□□□ -0.29
MSH6-207ENST00000456246 RND2P52198 227 aa13.22□□□□□ -0.29
MSH6-207ENST00000456246 YPEL3P61236 119 aaPredicted RBP13.22□□□□□ -0.29
MSH6-207ENST00000456246 MLANAQ16655 118 aa13.22□□□□□ -0.29
MSH6-207ENST00000456246 PRSS54Q6PEW0 395 aa13.22□□□□□ -0.29
MSH6-207ENST00000456246 LYZL2Q7Z4W2 148 aa13.22□□□□□ -0.29
MSH6-207ENST00000456246 TMED4Q7Z7H5 227 aa13.22□□□□□ -0.29
MSH6-207ENST00000456246 CCDC190Q86UF4 302 aa13.22□□□□□ -0.29
MSH6-207ENST00000456246 DTD1Q8TEA8 209 aa13.22□□□□□ -0.29
MSH6-207ENST00000456246 Q8WTZ3 238 aa13.22□□□□□ -0.29
MSH6-207ENST00000456246 GRAMD2BQ96HH9 432 aa13.22□□□□□ -0.29
MSH6-207ENST00000456246 MAP6D1Q9H9H5 199 aa13.22□□□□□ -0.29
MSH6-207ENST00000456246 TENM2Q9NT68 2774 aa13.21□□□□□ -0.29
MSH6-207ENST00000456246 IFNA10P01566 189 aa13.21□□□□□ -0.29
MSH6-207ENST00000456246 APOHP02749 345 aaPredicted RBP13.21□□□□□ -0.29
MSH6-207ENST00000456246 OR10J1P30954 320 aa13.21□□□□□ -0.29
MSH6-207ENST00000456246 EIF2B2P49770 351 aaKnown RBP13.21□□□□□ -0.29
MSH6-207ENST00000456246 RPL11P62913 178 aaKnown RBP13.21□□□□□ -0.29
MSH6-207ENST00000456246 DEFB135Q30KP9 77 aa13.21□□□□□ -0.29
MSH6-207ENST00000456246 APRG1Q8IVJ8 170 aa13.21□□□□□ -0.29
MSH6-207ENST00000456246 GBGT1Q8N5D6 347 aa13.21□□□□□ -0.29
MSH6-207ENST00000456246 RNF183Q96D59 192 aa13.21□□□□□ -0.29
MSH6-207ENST00000456246 MS4A6AQ9H2W1 248 aa13.21□□□□□ -0.29
MSH6-207ENST00000456246 PRR13Q9NZ81 148 aa13.21□□□□□ -0.29
MSH6-207ENST00000456246 SLC25A6P12236 298 aa13.2□□□□□ -0.3
MSH6-207ENST00000456246 RPL35AP18077 110 aaKnown RBP13.2□□□□□ -0.3
MSH6-207ENST00000456246 TIGITQ495A1 244 aa13.2□□□□□ -0.3
MSH6-207ENST00000456246 LRTM2Q8N967 370 aa13.2□□□□□ -0.3
MSH6-207ENST00000456246 OR1S1Q8NH92 325 aa13.2□□□□□ -0.3
MSH6-207ENST00000456246 TMEM170AQ8WVE7 144 aa13.2□□□□□ -0.3
MSH6-207ENST00000456246 CSMD3Q7Z407 3707 aa13.2□□□□□ -0.3
MSH6-207ENST00000456246 IGHV3-66A0A0C4DH42 116 aa13.19□□□□□ -0.3
MSH6-207ENST00000456246 MPTX1A8MV57 137 aa13.19□□□□□ -0.3
MSH6-207ENST00000456246 JTBO76095 146 aa13.19□□□□□ -0.3
MSH6-207ENST00000456246 NXPH3O95157 252 aa13.19□□□□□ -0.3
MSH6-207ENST00000456246 ATF4P18848 351 aaPredicted RBP13.19□□□□□ -0.3
MSH6-207ENST00000456246 VAMP1P23763 118 aa13.19□□□□□ -0.3
MSH6-207ENST00000456246 P2RY1P47900 373 aa13.19□□□□□ -0.3
MSH6-207ENST00000456246 RBMS2Q15434 407 aaKnown RBP13.19□□□□□ -0.3
MSH6-207ENST00000456246 TMEM217Q8N7C4 229 aa13.19□□□□□ -0.3
MSH6-207ENST00000456246 CSTL1Q9H114 145 aa13.19□□□□□ -0.3
MSH6-207ENST00000456246 DYNC2H1Q8NCM8 4307 aaKnown RBP13.18□□□□□ -0.3
MSH6-207ENST00000456246 HELTA6NFD8 242 aa13.18□□□□□ -0.3
MSH6-207ENST00000456246 FAM90A26D6RGX4 464 aa13.18□□□□□ -0.3
MSH6-207ENST00000456246 HNRNPCP07910 306 aaKnown RBP eCLIP13.18□□□□□ -0.3
MSH6-207ENST00000456246 INPP1P49441 399 aa13.18□□□□□ -0.3
MSH6-207ENST00000456246 UBE2MP61081 183 aaKnown RBP13.18□□□□□ -0.3
MSH6-207ENST00000456246 CENPSQ8N2Z9 138 aa13.18□□□□□ -0.3
MSH6-207ENST00000456246 LILRB2Q8N423 598 aa13.18□□□□□ -0.3
MSH6-207ENST00000456246 GATAD1Q8WUU5 269 aa13.18□□□□□ -0.3
MSH6-207ENST00000456246 RBKSQ9H477 322 aa13.18□□□□□ -0.3
MSH6-207ENST00000456246 RABAC1Q9UI14 185 aa13.18□□□□□ -0.3
MSH6-207ENST00000456246 TMED3Q9Y3Q3 217 aa13.18□□□□□ -0.3
MSH6-207ENST00000456246 STARD9Q9P2P6 4700 aa13.17□□□□□ -0.3
MSH6-207ENST00000456246 NAP1L6A6NFF2 107 aa13.17□□□□□ -0.3
MSH6-207ENST00000456246 MED6O75586 246 aa13.17□□□□□ -0.3
MSH6-207ENST00000456246 TOMM40O96008 361 aa13.17□□□□□ -0.3
MSH6-207ENST00000456246 IFNA4P05014 189 aa13.17□□□□□ -0.3
MSH6-207ENST00000456246 NUP62P37198 522 aaPredicted RBP13.17□□□□□ -0.3
MSH6-207ENST00000456246 AP2S1P53680 142 aaPredicted RBP13.17□□□□□ -0.3
MSH6-207ENST00000456246 LYG2Q86SG7 212 aa13.17□□□□□ -0.3
MSH6-207ENST00000456246 STXBP6Q8NFX7 210 aa13.17□□□□□ -0.3
MSH6-207ENST00000456246 NPIPB3Q92617 1050 aa13.17□□□□□ -0.3
MSH6-207ENST00000456246 ACY3Q96HD9 319 aa13.17□□□□□ -0.3
MSH6-207ENST00000456246 SRRQ9GZT4 340 aa13.17□□□□□ -0.3
MSH6-207ENST00000456246 PFDN2Q9UHV9 154 aa13.17□□□□□ -0.3
MSH6-207ENST00000456246 U3KQE9 123 aa13.17□□□□□ -0.3
MSH6-207ENST00000456246 A0A0J9YWU9 116 aa13.16□□□□□ -0.3
MSH6-207ENST00000456246 PITX3O75364 302 aa13.16□□□□□ -0.3
MSH6-207ENST00000456246 SFT2D2O95562 160 aa13.16□□□□□ -0.3
MSH6-207ENST00000456246 IL4P05112 153 aa13.16□□□□□ -0.3
MSH6-207ENST00000456246 RD3LP0DJH9 198 aa13.16□□□□□ -0.3
MSH6-207ENST00000456246 GPX4P36969 197 aaPredicted RBP13.16□□□□□ -0.3
MSH6-207ENST00000456246 DEFB131AP59861 70 aa13.16□□□□□ -0.3
MSH6-207ENST00000456246 TRIQKQ629K1 86 aa13.16□□□□□ -0.3
MSH6-207ENST00000456246 CIB3Q96Q77 187 aaPredicted RBP13.16□□□□□ -0.3
MSH6-207ENST00000456246 K7EQG2 157 aa13.15□□□□□ -0.3
MSH6-207ENST00000456246 FABP1P07148 127 aa13.15□□□□□ -0.3
MSH6-207ENST00000456246 RAB11AP62491 216 aa13.15□□□□□ -0.3
MSH6-207ENST00000456246 ZNF124Q15973 351 aa13.15□□□□□ -0.3
MSH6-207ENST00000456246 SLC35E1Q96K37 410 aa13.15□□□□□ -0.3
MSH6-207ENST00000456246 RPP30P78346 268 aaKnown RBP13.14□□□□□ -0.31
MSH6-207ENST00000456246 PPP1R1AQ13522 171 aa13.14□□□□□ -0.31
MSH6-207ENST00000456246 TMEM41BQ5BJD5 291 aa13.14□□□□□ -0.31
MSH6-207ENST00000456246 C16orf54Q6UWD8 224 aa13.14□□□□□ -0.31
MSH6-207ENST00000456246 STHQ8IWL8 128 aa13.14□□□□□ -0.31
MSH6-207ENST00000456246 OR51G1Q8NGK1 321 aa13.14□□□□□ -0.31
MSH6-207ENST00000456246 GLMPQ8WWB7 406 aa13.14□□□□□ -0.31
MSH6-207ENST00000456246 NUPR2A6NF83 97 aa13.13□□□□□ -0.31
MSH6-207ENST00000456246 ZFP92A6NM28 416 aa13.13□□□□□ -0.31
MSH6-207ENST00000456246 USF2Q15853 346 aaPredicted RBP13.13□□□□□ -0.31
MSH6-207ENST00000456246 LEMD1Q68G75 181 aa13.13□□□□□ -0.31
MSH6-207ENST00000456246 OR8G2PQ6IF36 304 aa13.13□□□□□ -0.31
MSH6-207ENST00000456246 DCANP1Q8TF63 244 aa13.13□□□□□ -0.31
MSH6-207ENST00000456246 SEPSECSQ9HD40 501 aaKnown RBP13.13□□□□□ -0.31
MSH6-207ENST00000456246 CXorf65A6NEN9 183 aa13.12□□□□□ -0.31
MSH6-207ENST00000456246 CENPXA8MT69 81 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms