RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 TNFRSF1AP19438 455 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 CCL8P80075 99 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 KIAA1644Q3SXP7 199 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 FAM71F2Q6NXP2 309 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 MRPL54Q6P161 138 aaKnown RBP13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 RCHY1Q96PM5 261 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 FNDC4Q9H6D8 234 aaPredicted RBP13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 TBL2Q9Y4P3 447 aaKnown RBP13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 HIVEP3Q5T1R4 2406 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 COX7A2P2O60397 106 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 WT1-ASQ06250 92 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 FAM231DQ6ZW35 169 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 ZNF329Q86UD4 541 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 PDPNQ86YL7 162 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 THAP8Q8NA92 274 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 OR1L4Q8NGR5 311 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 VSTM2AQ8TAG5 236 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 MBD6Q96DN6 1003 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 ZNF355PQ9NSJ1 428 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 SERTAD4Q9NUC0 356 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 PAM16Q9Y3D7 125 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 CACNA1BQ00975 2339 aa13.23□□□□□ -0.29
CLCNKA-203ENST00000439316 IGKV1D-37A0A075B6S9 117 aa13.22□□□□□ -0.29
CLCNKA-203ENST00000439316 A0A1W2PS18 150 aa13.22□□□□□ -0.29
CLCNKA-203ENST00000439316 TCRBV4S1A1TA0A5B7 111 aa13.22□□□□□ -0.29
CLCNKA-203ENST00000439316 SRIP30626 198 aa13.22□□□□□ -0.29
CLCNKA-203ENST00000439316 C10orf113Q5VZT2 155 aa13.22□□□□□ -0.29
CLCNKA-203ENST00000439316 TMEM200BQ69YZ2 307 aa13.22□□□□□ -0.29
CLCNKA-203ENST00000439316 OR4C13Q8NGP0 309 aa13.22□□□□□ -0.29
CLCNKA-203ENST00000439316 ZNF596Q8TC21 504 aa13.22□□□□□ -0.29
CLCNKA-203ENST00000439316 WIPF2Q8TF74 440 aaPredicted RBP13.22□□□□□ -0.29
CLCNKA-203ENST00000439316 FAM103A1Q9BTL3 118 aaKnown RBP13.22□□□□□ -0.29
CLCNKA-203ENST00000439316 PAXXQ9BUH6 204 aa13.22□□□□□ -0.29
CLCNKA-203ENST00000439316 AMMECR1Q9Y4X0 333 aaPredicted RBP13.22□□□□□ -0.29
CLCNKA-203ENST00000439316 CFAP46Q8IYW2 2715 aa13.22□□□□□ -0.29
CLCNKA-203ENST00000439316 C17orf100A8MU93 164 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 CCL21O00585 134 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 FSTL3O95633 263 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 IGLV2-23P01705 113 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 PYYP10082 97 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 REG1BP48304 166 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 AMTP48728 403 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 BPIFB3P59826 476 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 KRTDAPP60985 99 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 ZNF124Q15973 351 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 C10orf55Q5SWW7 151 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 RASL11AQ6T310 242 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 PATE2Q6UY27 113 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 LINC00311Q8N616 119 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 C8orf31Q8N9H6 132 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 NHLRC2Q8NBF2 726 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 OR4B1Q8NGF8 309 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 NRN1Q9NPD7 142 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 SPTBN1Q01082 2364 aaKnown RBP13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 PEX7O00628 323 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 ZNF253O75346 499 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 CA1P00915 261 aaPredicted RBP13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 TMEM108Q6UXF1 575 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 NPIPB3Q92617 1050 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 LINC00479Q96M42 142 aa13.21□□□□□ -0.29
CLCNKA-203ENST00000439316 DIRC3C9JPN6 131 aa13.2□□□□□ -0.3
CLCNKA-203ENST00000439316 ZNF324O75467 553 aaPredicted RBP13.2□□□□□ -0.3
CLCNKA-203ENST00000439316 APCSP02743 223 aa13.2□□□□□ -0.3
CLCNKA-203ENST00000439316 REG1AP05451 166 aa13.2□□□□□ -0.3
CLCNKA-203ENST00000439316 SUB1P53999 127 aaKnown RBP eCLIP13.2□□□□□ -0.3
CLCNKA-203ENST00000439316 ADIPOQQ15848 244 aa13.2□□□□□ -0.3
CLCNKA-203ENST00000439316 FAM168AQ92567 244 aa13.2□□□□□ -0.3
CLCNKA-203ENST00000439316 ST6GALNAC6Q969X2 333 aa13.2□□□□□ -0.3
CLCNKA-203ENST00000439316 TMEM186Q96B77 213 aa13.2□□□□□ -0.3
CLCNKA-203ENST00000439316 FXYD5Q96DB9 178 aa13.2□□□□□ -0.3
CLCNKA-203ENST00000439316 DIAPH2-AS1Q14236 149 aa13.2□□□□□ -0.3
CLCNKA-203ENST00000439316 OR10X1Q8NGY0 326 aa13.2□□□□□ -0.3
CLCNKA-203ENST00000439316 ZNF331Q9NQX6 463 aaPredicted RBP13.2□□□□□ -0.3
CLCNKA-203ENST00000439316 MRPL36Q9P0J6 103 aaKnown RBP13.2□□□□□ -0.3
CLCNKA-203ENST00000439316 WASHC3Q9Y3C0 194 aa13.2□□□□□ -0.3
CLCNKA-203ENST00000439316 ANKHD1Q8IWZ3 2542 aaKnown RBP13.19□□□□□ -0.3
CLCNKA-203ENST00000439316 RPLP1P05386 114 aaKnown RBP13.19□□□□□ -0.3
CLCNKA-203ENST00000439316 PMCHP20382 165 aa13.19□□□□□ -0.3
CLCNKA-203ENST00000439316 MYCNOSP40205 109 aa13.19□□□□□ -0.3
CLCNKA-203ENST00000439316 NIT1Q86X76 327 aa13.19□□□□□ -0.3
CLCNKA-203ENST00000439316 WFDC8Q8IUA0 241 aa13.19□□□□□ -0.3
CLCNKA-203ENST00000439316 GRAMD2BQ96HH9 432 aa13.19□□□□□ -0.3
CLCNKA-203ENST00000439316 SSBP3Q9BWW4 388 aaPredicted RBP13.19□□□□□ -0.3
CLCNKA-203ENST00000439316 PPIAL4EA0A075B759 164 aa13.18□□□□□ -0.3
CLCNKA-203ENST00000439316 PPIAL4DF5H284 164 aa13.18□□□□□ -0.3
CLCNKA-203ENST00000439316 TMEM178BH3BS89 294 aa13.18□□□□□ -0.3
CLCNKA-203ENST00000439316 TNFRSF13BO14836 293 aaPredicted RBP13.18□□□□□ -0.3
CLCNKA-203ENST00000439316 PPIAL4FP0DN26 164 aa13.18□□□□□ -0.3
CLCNKA-203ENST00000439316 CTRLP40313 264 aa13.18□□□□□ -0.3
CLCNKA-203ENST00000439316 ZNF137PP52743 207 aa13.18□□□□□ -0.3
CLCNKA-203ENST00000439316 SLAQ13239 276 aa13.18□□□□□ -0.3
CLCNKA-203ENST00000439316 C7orf69Q9H7B7 122 aa13.18□□□□□ -0.3
CLCNKA-203ENST00000439316 MRPL27Q9P0M9 148 aaKnown RBP13.18□□□□□ -0.3
CLCNKA-203ENST00000439316 PPIAL4AQ9Y536 164 aa13.18□□□□□ -0.3
CLCNKA-203ENST00000439316 ZFYVE26Q68DK2 2539 aa13.18□□□□□ -0.3
CLCNKA-203ENST00000439316 DPRXA6NFQ7 191 aa13.18□□□□□ -0.3
CLCNKA-203ENST00000439316 THBDP07204 575 aa13.18□□□□□ -0.3
CLCNKA-203ENST00000439316 ZCCHC24Q8N2G6 241 aaKnown RBP13.18□□□□□ -0.3
CLCNKA-203ENST00000439316 TSKUQ8WUA8 353 aa13.18□□□□□ -0.3
CLCNKA-203ENST00000439316 TRAV34A0A0B4J273 112 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms