RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 GNG5P63218 68 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 ZNF324BQ6AW86 544 aaPredicted RBP10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 PHLDA1Q8WV24 401 aaPredicted RBP10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 VKORC1Q9BQB6 163 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 TRAV12-3A0A0B4J271 114 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 RBMY1BA6NDE4 496 aaKnown RBP10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 RBMY1EA6NEQ0 496 aaKnown RBP10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 K7ERU9 68 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 RBMY1DP0C7P1 496 aaKnown RBP10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 RBMY1A1P0DJD3 496 aaKnown RBP10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 RBMY1CP0DJD4 496 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 ZP1P60852 638 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 SELENOKQ9Y6D0 94 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 PSCAO43653 123 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 FBLIM1Q8WUP2 373 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 WFDC12Q8WWY7 111 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 NCOR2Q9Y618 2525 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 FER1L6-AS1Q8NA97 138 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 IMMP1LQ96LU5 166 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 SOX21Q9Y651 276 aaPredicted RBP10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 ZNF660Q6AZW8 331 aaPredicted RBP10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 GATAD1Q8WUU5 269 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 CA7P43166 264 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 UCP3P55916 312 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 MEF2CQ06413 473 aaPredicted RBP10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 C19orf67A6NJJ6 358 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 FOXA3P55318 350 aaPredicted RBP10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 C15orf32Q32M92 178 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 SRSF7Q16629 238 aaKnown RBP eCLIP10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 C8orf46Q8TAG6 207 aa10.08□□□□□ -0.8
CCDC88A-207ENST00000436346 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 TGFBR3LH3BV60 316 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 APOHP02749 345 aaPredicted RBP10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 TFF1P04155 84 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 PPP1R3EQ9H7J1 279 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 PRR32B1ATL7 298 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 FAM89BQ8N5H3 189 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 RNF125Q96EQ8 232 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 AICDAQ9GZX7 198 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 RPL35AP18077 110 aaKnown RBP10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 ATP5LO75964 103 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 C2orf68Q2NKX9 166 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 ORMDL3Q8N138 153 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 ZXDCQ2QGD7 858 aaPredicted RBP10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 FAM166AQ6J272 317 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 C20orf204Q6ZNR8 217 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 TM2D1Q9BX74 207 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 ANKRD17O75179 2603 aaKnown RBP10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 PIEZO1Q92508 2521 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 MRPS18CQ9Y3D5 142 aaKnown RBP10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 C15orf61A6NNL5 157 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 CSRP1P21291 193 aaKnown RBP10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 FOXF2Q12947 444 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 TCF23Q7RTU1 214 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 GCM2O75603 506 aaPredicted RBP10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 PMCHL2Q9BQD1 86 aa10.07□□□□□ -0.8
CCDC88A-207ENST00000436346 TMEM14DPA8MWL7 114 aa10.06□□□□□ -0.8
CCDC88A-207ENST00000436346 SLC17A3O00476 420 aa10.06□□□□□ -0.8
CCDC88A-207ENST00000436346 CACNG8Q8WXS5 425 aa10.06□□□□□ -0.8
CCDC88A-207ENST00000436346 IFI27P40305 119 aaPredicted RBP10.06□□□□□ -0.8
CCDC88A-207ENST00000436346 LINC01590Q5TEZ4 76 aa10.06□□□□□ -0.8
CCDC88A-207ENST00000436346 PAX8Q06710 450 aa10.06□□□□□ -0.8
CCDC88A-207ENST00000436346 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.06□□□□□ -0.8
CCDC88A-207ENST00000436346 GNLYP22749 145 aa10.06□□□□□ -0.8
CCDC88A-207ENST00000436346 IGHV3-73A0A0B4J1V6 119 aa10.06□□□□□ -0.8
CCDC88A-207ENST00000436346 C1QTNF9BB2RNN3 333 aa10.06□□□□□ -0.8
CCDC88A-207ENST00000436346 VCX2Q9H322 139 aa10.05□□□□□ -0.8
CCDC88A-207ENST00000436346 IGKV1D-43A0A0B4J1Z2 117 aa10.05□□□□□ -0.8
CCDC88A-207ENST00000436346 TIMM23O14925 209 aa10.05□□□□□ -0.8
CCDC88A-207ENST00000436346 EVI2AP22794 236 aa10.05□□□□□ -0.8
CCDC88A-207ENST00000436346 CKS1BP61024 79 aa10.05□□□□□ -0.8
CCDC88A-207ENST00000436346 C21orf62-AS1Q17RA5 79 aa10.05□□□□□ -0.8
CCDC88A-207ENST00000436346 GATA2P23769 480 aaPredicted RBP10.05□□□□□ -0.8
CCDC88A-207ENST00000436346 IGF2RP11717 2491 aa10.05□□□□□ -0.8
CCDC88A-207ENST00000436346 IGHV1-18A0A0C4DH31 117 aa10.05□□□□□ -0.8
CCDC88A-207ENST00000436346 A0A1B0GW15 77 aa10.05□□□□□ -0.8
CCDC88A-207ENST00000436346 PRB4P10163 310 aaPredicted RBP10.05□□□□□ -0.8
CCDC88A-207ENST00000436346 ASCL2Q99929 193 aa10.05□□□□□ -0.8
CCDC88A-207ENST00000436346 Q6AWC8 147 aa10.05□□□□□ -0.8
CCDC88A-207ENST00000436346 MIR17HGQ75NE6 70 aa10.05□□□□□ -0.8
CCDC88A-207ENST00000436346 ERVK11-1P61568 191 aa10.05□□□□□ -0.8
CCDC88A-207ENST00000436346 MORN2Q502X0 79 aa10.05□□□□□ -0.8
CCDC88A-207ENST00000436346 ST20Q9HBF5 79 aa10.05□□□□□ -0.8
CCDC88A-207ENST00000436346 RNF182Q8N6D2 247 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 KLHL30-AS1Q8NEE0 82 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 IGHV4-39P01824 125 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 RPL15P61313 204 aaKnown RBP10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 UNQ6494/PRO21346Q6UXR6 183 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 C3orf56Q8N813 242 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 OTORQ9NRC9 128 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 ZNF257Q9Y2Q1 563 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 CD28P10747 220 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 FAM209BQ5JX69 171 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 TRGV11A0A075B6L2 103 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 CHCHD5Q9BSY4 110 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 TRAV41A0A0B4J266 112 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 PIN1P1O15428 100 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 EGR1P18146 543 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 OR5A1Q8NGJ0 315 aa10.04□□□□□ -0.8
CCDC88A-207ENST00000436346 NXT2Q9NPJ8 142 aaKnown RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms