RNA–Protein interactions for RNA: ENST00000426248.7

PKP4-205, Transcript of plakophilin 4, humanhuman

TSL 1 (best)

Gene PKP4, Length 4,134 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-205ENST00000426248 OR2H2O95918 312 aa13.16□□□□□ -0.3
PKP4-205ENST00000426248 CXorf1O96002 111 aa13.16□□□□□ -0.3
PKP4-205ENST00000426248 ZNF137PP52743 207 aa13.16□□□□□ -0.3
PKP4-205ENST00000426248 TMEM116Q8NCL8 245 aa13.16□□□□□ -0.3
PKP4-205ENST00000426248 A6NDN8 102 aa13.16□□□□□ -0.3
PKP4-205ENST00000426248 IGKV1-5P01602 117 aa13.16□□□□□ -0.3
PKP4-205ENST00000426248 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.15□□□□□ -0.3
PKP4-205ENST00000426248 SPINT2O43291 252 aa13.15□□□□□ -0.3
PKP4-205ENST00000426248 GNLYP22749 145 aa13.15□□□□□ -0.3
PKP4-205ENST00000426248 OR10AG1Q8NH19 301 aa13.15□□□□□ -0.3
PKP4-205ENST00000426248 OR51B2Q9Y5P1 312 aa13.15□□□□□ -0.3
PKP4-205ENST00000426248 K7EQM0 130 aa13.15□□□□□ -0.3
PKP4-205ENST00000426248 PRAMEF5Q5TYX0 476 aa13.15□□□□□ -0.3
PKP4-205ENST00000426248 EAF1Q96JC9 268 aaPredicted RBP13.15□□□□□ -0.3
PKP4-205ENST00000426248 PPIAL4CA0A0B4J2A2 164 aa13.15□□□□□ -0.3
PKP4-205ENST00000426248 PPIAL4GP0DN37 164 aa13.15□□□□□ -0.3
PKP4-205ENST00000426248 HS3ST6Q96QI5 342 aa13.15□□□□□ -0.3
PKP4-205ENST00000426248 IQCF6A8MYZ5 107 aa13.15□□□□□ -0.31
PKP4-205ENST00000426248 RAB31Q13636 194 aa13.15□□□□□ -0.31
PKP4-205ENST00000426248 EBLN2Q6P2I7 272 aa13.15□□□□□ -0.31
PKP4-205ENST00000426248 DEFB125Q8N687 156 aa13.15□□□□□ -0.31
PKP4-205ENST00000426248 Q8N976 141 aa13.15□□□□□ -0.31
PKP4-205ENST00000426248 TMEM30CPA0ZSE6 113 aa13.14□□□□□ -0.31
PKP4-205ENST00000426248 MAP1LC3CQ9BXW4 147 aa13.14□□□□□ -0.31
PKP4-205ENST00000426248 RNF7Q9UBF6 113 aa13.14□□□□□ -0.31
PKP4-205ENST00000426248 CD5LO43866 347 aa13.14□□□□□ -0.31
PKP4-205ENST00000426248 CEACAM3P40198 252 aa13.14□□□□□ -0.31
PKP4-205ENST00000426248 NEUROG1Q92886 237 aa13.14□□□□□ -0.31
PKP4-205ENST00000426248 JKAMPQ9P055 326 aa13.14□□□□□ -0.31
PKP4-205ENST00000426248 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.14□□□□□ -0.31
PKP4-205ENST00000426248 ARF6P62330 175 aa13.14□□□□□ -0.31
PKP4-205ENST00000426248 RHOGP84095 191 aa13.14□□□□□ -0.31
PKP4-205ENST00000426248 TMEM42Q69YG0 159 aa13.14□□□□□ -0.31
PKP4-205ENST00000426248 PKIBQ9C010 78 aa13.14□□□□□ -0.31
PKP4-205ENST00000426248 ZNF355PQ9NSJ1 428 aa13.14□□□□□ -0.31
PKP4-205ENST00000426248 TMEM238LA0A1B0GVL6 79 aa13.13□□□□□ -0.31
PKP4-205ENST00000426248 CATR1Q13166 79 aa13.13□□□□□ -0.31
PKP4-205ENST00000426248 MS4A5Q9H3V2 200 aa13.13□□□□□ -0.31
PKP4-205ENST00000426248 UBTD1Q9HAC8 227 aa13.13□□□□□ -0.31
PKP4-205ENST00000426248 USP9YO00507 2555 aaPredicted RBP13.13□□□□□ -0.31
PKP4-205ENST00000426248 PRDX2P32119 198 aa13.13□□□□□ -0.31
PKP4-205ENST00000426248 GALMQ96C23 342 aa13.13□□□□□ -0.31
PKP4-205ENST00000426248 TNCP24821 2201 aa13.13□□□□□ -0.31
PKP4-205ENST00000426248 CGAP01215 116 aa13.13□□□□□ -0.31
PKP4-205ENST00000426248 F11RQ9Y624 299 aaKnown RBP13.13□□□□□ -0.31
PKP4-205ENST00000426248 FABP2P12104 132 aa13.12□□□□□ -0.31
PKP4-205ENST00000426248 CCL13Q99616 98 aa13.12□□□□□ -0.31
PKP4-205ENST00000426248 K7EN84 100 aa13.12□□□□□ -0.31
PKP4-205ENST00000426248 HES1Q14469 280 aa13.12□□□□□ -0.31
PKP4-205ENST00000426248 OR4A16Q8NH70 328 aa13.12□□□□□ -0.31
PKP4-205ENST00000426248 OR4A5Q8NH83 315 aa13.12□□□□□ -0.31
PKP4-205ENST00000426248 C18orf32Q8TCD1 76 aa13.12□□□□□ -0.31
PKP4-205ENST00000426248 ATP6V0BQ99437 205 aa13.12□□□□□ -0.31
PKP4-205ENST00000426248 ST20Q9HBF5 79 aa13.12□□□□□ -0.31
PKP4-205ENST00000426248 YTHDF2Q9Y5A9 579 aaKnown RBP13.12□□□□□ -0.31
PKP4-205ENST00000426248 COX19Q49B96 90 aa13.12□□□□□ -0.31
PKP4-205ENST00000426248 TMEM136Q6ZRR5 245 aa13.12□□□□□ -0.31
PKP4-205ENST00000426248 ZNF295-AS1Q8N0V1 137 aa13.12□□□□□ -0.31
PKP4-205ENST00000426248 ZNRF1Q8ND25 227 aa13.12□□□□□ -0.31
PKP4-205ENST00000426248 OR4F17Q8NGA8 305 aa13.12□□□□□ -0.31
PKP4-205ENST00000426248 LSM10Q969L4 123 aaKnown RBP13.12□□□□□ -0.31
PKP4-205ENST00000426248 TRAV26-1A0A087WT03 109 aa13.11□□□□□ -0.31
PKP4-205ENST00000426248 ADH4P08319 380 aa13.11□□□□□ -0.31
PKP4-205ENST00000426248 MEF2CQ06413 473 aaPredicted RBP13.11□□□□□ -0.31
PKP4-205ENST00000426248 SLAQ13239 276 aa13.11□□□□□ -0.31
PKP4-205ENST00000426248 SP5Q6BEB4 398 aaPredicted RBP13.11□□□□□ -0.31
PKP4-205ENST00000426248 KIR3DL3Q8N743 410 aa13.11□□□□□ -0.31
PKP4-205ENST00000426248 RNASE6Q93091 150 aaKnown RBP13.11□□□□□ -0.31
PKP4-205ENST00000426248 SGK494Q96LW2 274 aa13.11□□□□□ -0.31
PKP4-205ENST00000426248 CPAMD8Q8IZJ3 1885 aa13.11□□□□□ -0.31
PKP4-205ENST00000426248 GRNP28799 593 aaKnown RBP13.11□□□□□ -0.31
PKP4-205ENST00000426248 JMJD1CQ15652 2540 aa13.11□□□□□ -0.31
PKP4-205ENST00000426248 GCHFRP30047 84 aa13.11□□□□□ -0.31
PKP4-205ENST00000426248 PSG11Q9UQ72 335 aa13.11□□□□□ -0.31
PKP4-205ENST00000426248 TRAV9-1A0A075B6T8 112 aa13.11□□□□□ -0.31
PKP4-205ENST00000426248 IGKV1-6A0A0C4DH72 117 aa13.11□□□□□ -0.31
PKP4-205ENST00000426248 IGKV1-39P01597 117 aa13.11□□□□□ -0.31
PKP4-205ENST00000426248 IGLV3-1P01715 115 aa13.11□□□□□ -0.31
PKP4-205ENST00000426248 IGKV1D-39P04432 117 aa13.11□□□□□ -0.31
PKP4-205ENST00000426248 RHOBP62745 196 aa13.11□□□□□ -0.31
PKP4-205ENST00000426248 HIST1H1AQ02539 215 aaPredicted RBP13.11□□□□□ -0.31
PKP4-205ENST00000426248 STXBP6Q8NFX7 210 aa13.11□□□□□ -0.31
PKP4-205ENST00000426248 SSC4DQ8WTU2 575 aa13.11□□□□□ -0.31
PKP4-205ENST00000426248 RAMP3O60896 148 aa13.1□□□□□ -0.31
PKP4-205ENST00000426248 IGHV3-48P01763 117 aa13.1□□□□□ -0.31
PKP4-205ENST00000426248 IGLC1P0CG04 106 aa13.1□□□□□ -0.31
PKP4-205ENST00000426248 CD24P25063 80 aa13.1□□□□□ -0.31
PKP4-205ENST00000426248 CX3CL1P78423 397 aa13.1□□□□□ -0.31
PKP4-205ENST00000426248 TSSC4Q9Y5U2 329 aaPredicted RBP13.1□□□□□ -0.31
PKP4-205ENST00000426248 A0A0G2JLM5 398 aa13.1□□□□□ -0.31
PKP4-205ENST00000426248 G3V4G9 280 aa13.1□□□□□ -0.31
PKP4-205ENST00000426248 TMEM97Q5BJF2 176 aa13.1□□□□□ -0.31
PKP4-205ENST00000426248 FAM216AQ8WUB2 273 aa13.1□□□□□ -0.31
PKP4-205ENST00000426248 CHEK1O14757 476 aa13.1□□□□□ -0.31
PKP4-205ENST00000426248 HBZP02008 142 aa13.1□□□□□ -0.31
PKP4-205ENST00000426248 OR5AL1P0C617 328 aa13.1□□□□□ -0.31
PKP4-205ENST00000426248 PRB3Q04118 309 aaPredicted RBP13.1□□□□□ -0.31
PKP4-205ENST00000426248 SPATA31B1PQ5VZV4 182 aa13.1□□□□□ -0.31
PKP4-205ENST00000426248 IGHV3-21A0A0B4J1V1 117 aa13.09□□□□□ -0.31
PKP4-205ENST00000426248 CRIP3Q6Q6R5 217 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms