RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 PPP1R1CQ8WVI7 109 aa9.64□□□□□ -0.87
LINC00339-202ENST00000416769 ZC4H2Q9NQZ6 224 aa9.64□□□□□ -0.87
LINC00339-202ENST00000416769 PEMTQ9UBM1 199 aa9.64□□□□□ -0.87
LINC00339-202ENST00000416769 RCL1Q9Y2P8 373 aaKnown RBP9.64□□□□□ -0.87
LINC00339-202ENST00000416769 LSM5Q9Y4Y9 91 aaKnown RBP9.64□□□□□ -0.87
LINC00339-202ENST00000416769 F11RQ9Y624 299 aaKnown RBP9.64□□□□□ -0.87
LINC00339-202ENST00000416769 hCG_2014768A0A024R1R8 64 aa9.63□□□□□ -0.87
LINC00339-202ENST00000416769 CYB5BO43169 146 aa9.63□□□□□ -0.87
LINC00339-202ENST00000416769 DEDDO75618 318 aa9.63□□□□□ -0.87
LINC00339-202ENST00000416769 REG1AP05451 166 aa9.63□□□□□ -0.87
LINC00339-202ENST00000416769 RNASE2P10153 161 aaKnown RBP9.63□□□□□ -0.87
LINC00339-202ENST00000416769 IAPPP10997 89 aa9.63□□□□□ -0.87
LINC00339-202ENST00000416769 DEFA4P12838 97 aa9.63□□□□□ -0.87
LINC00339-202ENST00000416769 HIST1H1BP16401 226 aaKnown RBP9.63□□□□□ -0.87
LINC00339-202ENST00000416769 PVALBP20472 110 aaPredicted RBP9.63□□□□□ -0.87
LINC00339-202ENST00000416769 PAX9P55771 341 aa9.63□□□□□ -0.87
LINC00339-202ENST00000416769 ATP5G2Q06055 141 aa9.63□□□□□ -0.87
LINC00339-202ENST00000416769 C2orf83Q53S99 150 aa9.63□□□□□ -0.87
LINC00339-202ENST00000416769 PVRIGQ6DKI7 326 aa9.63□□□□□ -0.87
LINC00339-202ENST00000416769 OR2K2Q8NGT1 345 aa9.63□□□□□ -0.87
LINC00339-202ENST00000416769 OR1P1Q8NH06 330 aa9.63□□□□□ -0.87
LINC00339-202ENST00000416769 CCDC140Q96MF4 163 aa9.63□□□□□ -0.87
LINC00339-202ENST00000416769 C11orf1Q9H5F2 150 aa9.63□□□□□ -0.87
LINC00339-202ENST00000416769 PSENENQ9NZ42 101 aa9.63□□□□□ -0.87
LINC00339-202ENST00000416769 MLXQ9UH92 298 aa9.63□□□□□ -0.87
LINC00339-202ENST00000416769 A0A0J9YWU9 116 aa9.62□□□□□ -0.87
LINC00339-202ENST00000416769 TMEM213A2RRL7 107 aa9.62□□□□□ -0.87
LINC00339-202ENST00000416769 CXorf65A6NEN9 183 aa9.62□□□□□ -0.87
LINC00339-202ENST00000416769 L7N2F9 121 aa9.62□□□□□ -0.87
LINC00339-202ENST00000416769 SSSCA1O60232 199 aa9.62□□□□□ -0.87
LINC00339-202ENST00000416769 SCAF4O95104 1147 aaKnown RBP9.62□□□□□ -0.87
LINC00339-202ENST00000416769 MPC2O95563 127 aa9.62□□□□□ -0.87
LINC00339-202ENST00000416769 IFNA10P01566 189 aa9.62□□□□□ -0.87
LINC00339-202ENST00000416769 PET100P0DJ07 73 aa9.62□□□□□ -0.87
LINC00339-202ENST00000416769 S100A10P60903 97 aa9.62□□□□□ -0.87
LINC00339-202ENST00000416769 VAMP2P63027 116 aa9.62□□□□□ -0.87
LINC00339-202ENST00000416769 FGL1Q08830 312 aa9.62□□□□□ -0.87
LINC00339-202ENST00000416769 C15orf32Q32M92 178 aa9.62□□□□□ -0.87
LINC00339-202ENST00000416769 SLC25A24Q6NUK1 477 aa9.62□□□□□ -0.87
LINC00339-202ENST00000416769 SLC24A4Q8NFF2 622 aa9.62□□□□□ -0.87
LINC00339-202ENST00000416769 FANCD2OSQ96PS1 177 aa9.62□□□□□ -0.87
LINC00339-202ENST00000416769 RNF126Q9BV68 326 aa9.62□□□□□ -0.87
LINC00339-202ENST00000416769 THYN1Q9P016 225 aa9.62□□□□□ -0.87
LINC00339-202ENST00000416769 IGLV11-55A0A075B6I3 123 aa9.61□□□□□ -0.87
LINC00339-202ENST00000416769 FAM223BA6NKX1 122 aa9.61□□□□□ -0.87
LINC00339-202ENST00000416769 E5RGE8 158 aa9.61□□□□□ -0.87
LINC00339-202ENST00000416769 H0YIZ8 118 aa9.61□□□□□ -0.87
LINC00339-202ENST00000416769 TSC22D2O75157 780 aa9.61□□□□□ -0.87
LINC00339-202ENST00000416769 NDUFB8O95169 186 aa9.61□□□□□ -0.87
LINC00339-202ENST00000416769 TMEM50AO95807 157 aa9.61□□□□□ -0.87
LINC00339-202ENST00000416769 NPY1RP25929 384 aa9.61□□□□□ -0.87
LINC00339-202ENST00000416769 MFAP2P55001 183 aa9.61□□□□□ -0.87
LINC00339-202ENST00000416769 RAB11AP62491 216 aa9.61□□□□□ -0.87
LINC00339-202ENST00000416769 LRRC37A5PQ49AS3 106 aa9.61□□□□□ -0.87
LINC00339-202ENST00000416769 SPANXN5Q5MJ07 72 aa9.61□□□□□ -0.87
LINC00339-202ENST00000416769 PRSS54Q6PEW0 395 aa9.61□□□□□ -0.87
LINC00339-202ENST00000416769 FAM223AQ8IWN6 122 aa9.61□□□□□ -0.87
LINC00339-202ENST00000416769 STRAPQ9Y3F4 350 aaKnown RBP9.61□□□□□ -0.87
LINC00339-202ENST00000416769 CORTO00230 105 aa9.6□□□□□ -0.87
LINC00339-202ENST00000416769 CCNKO75909 580 aa9.6□□□□□ -0.87
LINC00339-202ENST00000416769 CBLN1P23435 193 aa9.6□□□□□ -0.87
LINC00339-202ENST00000416769 P2RY1P47900 373 aa9.6□□□□□ -0.87
LINC00339-202ENST00000416769 BTNL8Q6UX41 500 aa9.6□□□□□ -0.87
LINC00339-202ENST00000416769 TMEM14EPQ6UXP3 125 aa9.6□□□□□ -0.87
LINC00339-202ENST00000416769 CLEC19AQ6UXS0 136 aa9.6□□□□□ -0.87
LINC00339-202ENST00000416769 UNQ9165/PRO28630Q6UXU0 137 aa9.6□□□□□ -0.87
LINC00339-202ENST00000416769 NECAP1Q8NC96 275 aa9.6□□□□□ -0.87
LINC00339-202ENST00000416769 OR2T35Q8NGX2 323 aa9.6□□□□□ -0.87
LINC00339-202ENST00000416769 THAP6Q8TBB0 222 aa9.6□□□□□ -0.87
LINC00339-202ENST00000416769 RNASEH2CQ8TDP1 164 aaKnown RBP9.6□□□□□ -0.87
LINC00339-202ENST00000416769 TMEM170AQ8WVE7 144 aa9.6□□□□□ -0.87
LINC00339-202ENST00000416769 ST6GAL2Q96JF0 529 aa9.6□□□□□ -0.87
LINC00339-202ENST00000416769 GGTLC1Q9BX51 225 aa9.6□□□□□ -0.87
LINC00339-202ENST00000416769 OR5AC2Q9NZP5 309 aa9.6□□□□□ -0.87
LINC00339-202ENST00000416769 VPS13DQ5THJ4 4388 aa9.59□□□□□ -0.87
LINC00339-202ENST00000416769 TRAV14DV4A0A0A6YYC5 116 aa9.59□□□□□ -0.87
LINC00339-202ENST00000416769 IGHV3-35A0A0C4DH35 117 aa9.59□□□□□ -0.87
LINC00339-202ENST00000416769 C15orf62A8K5M9 175 aa9.59□□□□□ -0.87
LINC00339-202ENST00000416769 SLC25A4P12235 298 aa9.59□□□□□ -0.87
LINC00339-202ENST00000416769 TM4SF20Q53R12 229 aa9.59□□□□□ -0.87
LINC00339-202ENST00000416769 Q5BKY6 102 aa9.59□□□□□ -0.87
LINC00339-202ENST00000416769 LYRM2Q9NU23 88 aaPredicted RBP9.59□□□□□ -0.87
LINC00339-202ENST00000416769 UBQLN2Q9UHD9 624 aa9.59□□□□□ -0.87
LINC00339-202ENST00000416769 FBXL7Q9UJT9 491 aa9.59□□□□□ -0.87
LINC00339-202ENST00000416769 ZNF320A2RRD8 509 aa9.58□□□□□ -0.88
LINC00339-202ENST00000416769 MFSD2BA6NFX1 497 aa9.58□□□□□ -0.88
LINC00339-202ENST00000416769 FAM24AA6NFZ4 105 aa9.58□□□□□ -0.88
LINC00339-202ENST00000416769 PMS2P5A8MQ11 134 aa9.58□□□□□ -0.88
LINC00339-202ENST00000416769 GGCTO75223 188 aaKnown RBP9.58□□□□□ -0.88
LINC00339-202ENST00000416769 IFNA4P05014 189 aa9.58□□□□□ -0.88
LINC00339-202ENST00000416769 ARL3P36405 182 aa9.58□□□□□ -0.88
LINC00339-202ENST00000416769 GPX4P36969 197 aaPredicted RBP9.58□□□□□ -0.88
LINC00339-202ENST00000416769 DEFB135Q30KP9 77 aa9.58□□□□□ -0.88
LINC00339-202ENST00000416769 ETFRF1Q6IPR1 90 aa9.58□□□□□ -0.88
LINC00339-202ENST00000416769 TCTE3Q8IZS6 198 aa9.58□□□□□ -0.88
LINC00339-202ENST00000416769 TMEM252Q8N6L7 170 aa9.58□□□□□ -0.88
LINC00339-202ENST00000416769 VN1R17PQ8TDU5 208 aa9.58□□□□□ -0.88
LINC00339-202ENST00000416769 CXorf58Q96LI9 332 aa9.58□□□□□ -0.88
LINC00339-202ENST00000416769 SLC25A31Q9H0C2 315 aa9.58□□□□□ -0.88
LINC00339-202ENST00000416769 MBD2Q9UBB5 411 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms