RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 LOC101059948A0A1B0GTJ6 334 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 F8WEM9 126 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 LEPROTO15243 131 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 SIVA1O15304 175 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 CELA2AP08217 269 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 TMEM155Q4W5P6 130 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 PEAR1Q5VY43 1037 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-203ENST00000409050 CLEC19AQ6UXS0 136 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 ANKRD31Q8N7Z5 1873 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 IGHV3OR16-12A0A075B7B8 117 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 VWC2LB2RUY7 222 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 PMVKQ15126 192 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 LY6G5BQ8NDX9 201 aa5.05□□□□□ -1.6
SCN1A-203ENST00000409050 ZNFX1Q9P2E3 1918 aaKnown RBP5.04□□□□□ -1.6
SCN1A-203ENST00000409050 PSMB11A5LHX3 300 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 PROB1E7EW31 1015 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 ATXN7O15265 892 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-203ENST00000409050 GZMBP10144 247 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 PSG3Q16557 428 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 UMODP07911 640 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 PLAURQ03405 335 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 TGIF1Q15583 401 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 ZNF562Q6V9R5 426 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 PAQR4Q8N4S7 273 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-203ENST00000409050 FAM216BQ8N7L0 139 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 TMEM75Q8N9X5 138 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 CDK5RAP2Q96SN8 1893 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 MAP1BP46821 2468 aaKnown RBP5.04□□□□□ -1.6
SCN1A-203ENST00000409050 TRAV41A0A0B4J266 112 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 IGKV1-9A0A0C4DH69 117 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 PATE3B3GLJ2 98 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 GAS1P54826 345 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 ZFP36L1Q07352 338 aaKnown RBP5.04□□□□□ -1.6
SCN1A-203ENST00000409050 BSPH1Q075Z2 132 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 RNF166Q96A37 237 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-203ENST00000409050 MEGF9Q9H1U4 602 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 SYS1-DBNDD2H3BUS1 97 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 CDK2AP2O75956 126 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 IGKV3-15P01624 115 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 CCL3L1P16619 93 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 SRD5A1P18405 259 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 ITLN2Q8WWU7 325 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-203ENST00000409050 VGLL1Q99990 258 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 ANAPC10Q9UM13 185 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 TRGV4A0A0C4DH28 118 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 IGHV1-24A0A0C4DH33 117 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 YPEL3P61236 119 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-203ENST00000409050 FAM219BQ5XKK7 198 aa5.04□□□□□ -1.6
SCN1A-203ENST00000409050 RNASE7Q9H1E1 156 aaKnown RBP5.04□□□□□ -1.6
SCN1A-203ENST00000409050 RALGAPA2Q2PPJ7 1873 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 CACNA1CQ13936 2221 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 IGKV1D-13A0A0B4J2D9 117 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 LILRA1O75019 489 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 IGKV1-13P0DP09 117 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 EGR1P18146 543 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 CKS1BP61024 79 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 GAGE1Q13065 139 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 TMEM95Q3KNT9 176 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 TPTE2P1Q5T6R2 138 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 COLCA1Q6ZS62 124 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 TRPT1Q86TN4 253 aaKnown RBP5.03□□□□□ -1.6
SCN1A-203ENST00000409050 GTSCR1Q86UQ5 136 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 C17orf82Q86X59 251 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-203ENST00000409050 SMAD7O15105 426 aaKnown RBP5.03□□□□□ -1.6
SCN1A-203ENST00000409050 FAM19A2Q8N3H0 131 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 UBR3Q6ZT12 1888 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 MLNRO43193 412 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 EFNA4P52798 201 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 LY6EQ16553 131 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 C2orf82Q6UX34 121 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 FDCSPQ8NFU4 85 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 LYZL4Q96KX0 146 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 REG4Q9BYZ8 158 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 C7orf69Q9H7B7 122 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 JPT2Q9H910 190 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 TOMM7Q9P0U1 55 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 TRAV2A0A0B4J234 112 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 SLC25A16P16260 332 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 NRTNQ99748 197 aa5.03□□□□□ -1.6
SCN1A-203ENST00000409050 MYO16Q9Y6X6 1858 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 A0A0G2JMM0 328 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 A0A1W2PPB8 328 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 KIR3DP1A8MWS1 328 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 F8W1H4 67 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 NTN3O00634 580 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-203ENST00000409050 INSP01308 110 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 DPH3Q96FX2 82 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 FNDC4Q9H6D8 234 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-203ENST00000409050 WFDC1Q9HC57 220 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 MYO9BQ13459 2157 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 TRIP11Q15643 1979 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 IGKV1D-43A0A0B4J1Z2 117 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 ATRAIDQ6UW56 229 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 FLVCR1-AS1Q8TAF5 88 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 LEAP2Q969E1 77 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 TMEM14CQ9P0S9 112 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 TAF1P21675 1872 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 PRSS46E5RG02 174 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 ZNF474Q6S9Z5 364 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-203ENST00000409050 IGHV1-8P0DP01 117 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms