RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 OR5AC2Q9NZP5 309 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 STRAPQ9Y3F4 350 aaKnown RBP7.05□□□□□ -1.28
VPS53-203ENST00000401468 LSM5Q9Y4Y9 91 aaKnown RBP7.05□□□□□ -1.28
VPS53-203ENST00000401468 A0A1B0GVG6 124 aa7.04□□□□□ -1.28
VPS53-203ENST00000401468 RLN2P04090 185 aa7.04□□□□□ -1.28
VPS53-203ENST00000401468 BCAP31P51572 246 aa7.04□□□□□ -1.28
VPS53-203ENST00000401468 S100A10P60903 97 aa7.04□□□□□ -1.28
VPS53-203ENST00000401468 RAB11AP62491 216 aa7.04□□□□□ -1.28
VPS53-203ENST00000401468 VWC2Q2TAL6 325 aa7.04□□□□□ -1.28
VPS53-203ENST00000401468 Q5BKY6 102 aa7.04□□□□□ -1.28
VPS53-203ENST00000401468 SPANXN5Q5MJ07 72 aa7.04□□□□□ -1.28
VPS53-203ENST00000401468 ETFRF1Q6IPR1 90 aa7.04□□□□□ -1.28
VPS53-203ENST00000401468 HAPLN4Q86UW8 402 aa7.04□□□□□ -1.28
VPS53-203ENST00000401468 TMEM252Q8N6L7 170 aa7.04□□□□□ -1.28
VPS53-203ENST00000401468 PRR25Q96S07 402 aa7.04□□□□□ -1.28
VPS53-203ENST00000401468 GGACTQ9BVM4 153 aa7.04□□□□□ -1.28
VPS53-203ENST00000401468 GAR1Q9NY12 217 aaKnown RBP7.04□□□□□ -1.28
VPS53-203ENST00000401468 C21orf62Q9NYP8 219 aa7.04□□□□□ -1.28
VPS53-203ENST00000401468 RPS10-NUDT3A0A1W2PQS6 291 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 IGSF23A1L1A6 192 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 H3BP45 60 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 L7N2F9 121 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 BMPR1BO00238 502 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 CCNKO75909 580 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 HSPB1P04792 205 aaKnown RBP7.03□□□□□ -1.28
VPS53-203ENST00000401468 CTSGP08311 255 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 OR8U8P0C7N1 319 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 METTL15P1P0C7V9 234 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 MED14OSP0DP75 135 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 OPRK1P41145 380 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 SULT1A1P50225 295 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 VAMP2P63027 116 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 DLK1P80370 383 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 BAXQ07812 192 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 ARL16Q0P5N6 197 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 GAMTQ14353 236 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 LRRC37A5PQ49AS3 106 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 SPSB3Q6PJ21 355 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 TCTE3Q8IZS6 198 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 RNF141Q8WVD5 230 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 BSCL2Q96G97 398 aaPredicted RBP7.03□□□□□ -1.28
VPS53-203ENST00000401468 RANGRFQ9HD47 186 aaPredicted RBP7.03□□□□□ -1.28
VPS53-203ENST00000401468 MRPL36Q9P0J6 103 aaKnown RBP7.03□□□□□ -1.28
VPS53-203ENST00000401468 MBD2Q9UBB5 411 aa7.03□□□□□ -1.28
VPS53-203ENST00000401468 PEF1Q9UBV8 284 aaKnown RBP7.03□□□□□ -1.28
VPS53-203ENST00000401468 IGKV1D-37A0A075B6S9 117 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 IGHV4OR15-8A0A075B7B6 117 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 A0A087WW49 117 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 FAM24AA6NFZ4 105 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 CLN5O75503 358 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 IGKV1-17P01599 117 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 TRBV12-3P01733 135 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 IGHV3-11P01762 117 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 IFNA4P05014 189 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 IGLC1P0CG04 106 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 MYCNOSP40205 109 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 NPBWR1P48145 328 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 MFAP4P55083 255 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 ZNF616Q08AN1 781 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 SLC16A13Q7RTY0 426 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 THAP8Q8NA92 274 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 WFDC9Q8NEX5 89 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 OR2T35Q8NGX2 323 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 PINX1Q96BK5 328 aaKnown RBP7.02□□□□□ -1.29
VPS53-203ENST00000401468 AQP10Q96PS8 301 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 TNFSF18Q9UNG2 199 aa7.02□□□□□ -1.29
VPS53-203ENST00000401468 TENM3Q9P273 2699 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 IGKV1OR2-108A0A075B7D4 117 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 TRAV30A0A087WSZ9 112 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 HMSDA8MTL9 139 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 LINC01619G3V211 115 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 CCL24O00175 119 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 TGOLN2O43493 480 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 CLEC3BP05452 202 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 S100A11P31949 105 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 CAV2P51636 162 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 YPEL3P61236 119 aaPredicted RBP7.01□□□□□ -1.29
VPS53-203ENST00000401468 EWSR1Q01844 656 aaKnown RBP eCLIP7.01□□□□□ -1.29
VPS53-203ENST00000401468 KLF5Q13887 457 aaPredicted RBP7.01□□□□□ -1.29
VPS53-203ENST00000401468 CLEC19AQ6UXS0 136 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 ACOT7LQ6ZUV0 252 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 REC114Q7Z4M0 266 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 TMEM144Q7Z5S9 345 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 GPHB5Q86YW7 130 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 OR11H1Q8NG94 326 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 OR10P1Q8NGE3 313 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 OR1N2Q8NGR9 330 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 THAP6Q8TBB0 222 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 RCC1LQ96I51 464 aaKnown RBP7.01□□□□□ -1.29
VPS53-203ENST00000401468 ASCL2Q99929 193 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 NEURL2Q9BR09 285 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 CHRDL1Q9BU40 450 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 SLC25A31Q9H0C2 315 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 LSM4Q9Y4Z0 139 aaKnown RBP7.01□□□□□ -1.29
VPS53-203ENST00000401468 HSPB11Q9Y547 144 aa7.01□□□□□ -1.29
VPS53-203ENST00000401468 DNAH9Q9NYC9 4486 aa7□□□□□ -1.29
VPS53-203ENST00000401468 IGHV3-21A0A0B4J1V1 117 aa7□□□□□ -1.29
VPS53-203ENST00000401468 RNF222A6NCQ9 220 aa7□□□□□ -1.29
VPS53-203ENST00000401468 OR2T8A6NH00 312 aa7□□□□□ -1.29
VPS53-203ENST00000401468 A8MWP6 167 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms