RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 XIRP1Q702N8 1843 aaKnown RBP10.63□□□□□ -0.71
CCDC88C-204ENST00000389857 GTF3AQ92664 365 aaKnown RBP10.63□□□□□ -0.71
CCDC88C-204ENST00000389857 MAP1BP46821 2468 aaKnown RBP10.63□□□□□ -0.71
CCDC88C-204ENST00000389857 LINC00114Q6XXX2 140 aa10.63□□□□□ -0.71
CCDC88C-204ENST00000389857 WBP1Q96G27 269 aa10.63□□□□□ -0.71
CCDC88C-204ENST00000389857 TRAV40A0A0B4J280 105 aa10.63□□□□□ -0.71
CCDC88C-204ENST00000389857 HSD52Q0P140 79 aa10.63□□□□□ -0.71
CCDC88C-204ENST00000389857 ASCL4Q6XD76 172 aa10.63□□□□□ -0.71
CCDC88C-204ENST00000389857 SIGMAR1Q99720 223 aa10.63□□□□□ -0.71
CCDC88C-204ENST00000389857 A8MXK9 166 aa10.63□□□□□ -0.71
CCDC88C-204ENST00000389857 E9PLN8 166 aa10.63□□□□□ -0.71
CCDC88C-204ENST00000389857 LTBP4Q8N2S1 1624 aa10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 PYYP10082 97 aa10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 EFNB3Q15768 340 aa10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 MEGF9Q9H1U4 602 aa10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 MBNL3Q9NUK0 354 aaKnown RBP10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 IGHV3-64A0A075B6Q5 118 aa10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 TIMM23O14925 209 aa10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 SRD5A1P18405 259 aa10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 SFTA2Q6UW10 78 aa10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 PLEKHB2Q96CS7 222 aa10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 IFI27L1Q96BM0 104 aa10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 TMEM8BA6NDV4 472 aa10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 IGLV3-19P01714 112 aa10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 SRSF4Q08170 494 aaKnown RBP10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 BRCA1P38398 1863 aaKnown RBP10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 SEC11AP67812 179 aa10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 TRBV7-1A0A0A6YYK4 115 aa10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 SRSF7Q16629 238 aaKnown RBP eCLIP10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 ZNF562Q6V9R5 426 aa10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 LAMTOR3Q9UHA4 124 aa10.62□□□□□ -0.71
CCDC88C-204ENST00000389857 IGHV1-18A0A0C4DH31 117 aa10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 LTBRP36941 435 aa10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 SAMD5Q5TGI4 173 aa10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 RASL10AQ92737 203 aa10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 ZXDCQ2QGD7 858 aaPredicted RBP10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 GAGE13Q4V321 117 aa10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 VMO1Q7Z5L0 202 aa10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 C1QTNF9P0C862 333 aa10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 PPIFP30405 207 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 SEC16AO15027 2179 aa10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 A0A1B0GTI1 187 aa10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 CCL1P22362 96 aa10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 CD24P25063 80 aa10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 RPL36AP83881 106 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 GAGE2EQ4V326 116 aa10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 RPL36ALQ969Q0 106 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 GAGE2DQ9UEU5 116 aa10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 DUTP33316 252 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 PRB3Q04118 309 aaPredicted RBP10.61□□□□□ -0.71
CCDC88C-204ENST00000389857 PAX4O43316 350 aa10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 SPSB3Q6PJ21 355 aa10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 TNS1Q9HBL0 1735 aaKnown RBP10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 LOC102723996A0A087X1L8 192 aa10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 RNF222A6NCQ9 220 aa10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 TEX43Q6ZNM6 134 aa10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 PRDM6Q9NQX0 595 aa10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 CD55P08174 381 aa10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 MRPL14Q6P1L8 145 aaKnown RBP10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 ZNF479Q96JC4 524 aa10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 MINOS1Q5TGZ0 78 aa10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 RASL11AQ6T310 242 aa10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 MINOS1-NBL1R4GNA1 71 aa10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 SBF2Q86WG5 1849 aa10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 IGKV1D-13A0A0B4J2D9 117 aa10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 IGKV1-13P0DP09 117 aa10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 CD33P20138 364 aa10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 CD300EQ496F6 205 aaPredicted RBP10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 ZNF837Q96EG3 531 aaPredicted RBP10.6□□□□□ -0.71
CCDC88C-204ENST00000389857 HIST1H4AP62805 103 aaKnown RBP10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 ERCC8Q13216 396 aa10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 TMEM155Q4W5P6 130 aa10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 IGHV2-26A0A0B4J1V2 119 aa10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 WFDC12Q8WWY7 111 aa10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 SPRR3Q9UBC9 169 aa10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 LEPROTO15243 131 aa10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 SLC25A48Q6ZT89 311 aaKnown RBP10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 LYZL4Q96KX0 146 aa10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 RNF126Q9BV68 326 aa10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 LRRC37AA6NMS7 1700 aa10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 DOCK4Q8N1I0 1966 aa10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 IGKV2-40A0A087WW87 121 aaPredicted RBP10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 A0A0U1RRA0 63 aa10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 VWC2LB2RUY7 222 aa10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 ITGB1BP1O14713 200 aa10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 IGKV2D-40P01614 121 aaPredicted RBP10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 FOXL1Q12952 345 aa10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 OCC1Q8TAD7 63 aa10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 MGST2Q99735 147 aa10.59□□□□□ -0.71
CCDC88C-204ENST00000389857 GBF1Q92538 1859 aa10.58□□□□□ -0.71
CCDC88C-204ENST00000389857 IGLV3-32A0A0A0MS00 114 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 NPIPB5A8MRT5 1133 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 C15orf32Q32M92 178 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 ZFAND6Q6FIF0 208 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 C20orf204Q6ZNR8 217 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 NR2C2APQ86WQ0 139 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 C1QTNF4Q9BXJ3 329 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 DEPPQ9NTK1 212 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 IGHV1-46P01743 117 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms