RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ABCA4P78363 2273 aa10.71□□□□□ -0.69
CCDC3-202ENST00000378839 NBASA2RRP1 2371 aa10.71□□□□□ -0.69
CCDC3-202ENST00000378839 A0A1W2PN81 502 aa10.71□□□□□ -0.69
CCDC3-202ENST00000378839 BUB1B-PAK6H3BSN5 160 aa10.71□□□□□ -0.69
CCDC3-202ENST00000378839 COX7A1P24310 79 aa10.71□□□□□ -0.69
CCDC3-202ENST00000378839 ZNF672Q499Z4 452 aaPredicted RBP10.71□□□□□ -0.69
CCDC3-202ENST00000378839 VSTM2AQ8TAG5 236 aa10.71□□□□□ -0.69
CCDC3-202ENST00000378839 GSX1Q9H4S2 264 aaPredicted RBP10.71□□□□□ -0.69
CCDC3-202ENST00000378839 PAM16Q9Y3D7 125 aa10.71□□□□□ -0.69
CCDC3-202ENST00000378839 VPS13CQ709C8 3753 aa10.71□□□□□ -0.7
CCDC3-202ENST00000378839 IGHV1-3A0A0C4DH29 117 aa10.71□□□□□ -0.7
CCDC3-202ENST00000378839 HELTA6NFD8 242 aa10.71□□□□□ -0.7
CCDC3-202ENST00000378839 FCN1O00602 326 aa10.71□□□□□ -0.7
CCDC3-202ENST00000378839 MOSP00540 346 aa10.71□□□□□ -0.7
CCDC3-202ENST00000378839 JOSD1Q15040 202 aaPredicted RBP10.71□□□□□ -0.7
CCDC3-202ENST00000378839 TDRG1Q3Y452 100 aa10.71□□□□□ -0.7
CCDC3-202ENST00000378839 Q6ZVH6 145 aa10.71□□□□□ -0.7
CCDC3-202ENST00000378839 TMEM256Q8N2U0 113 aa10.71□□□□□ -0.7
CCDC3-202ENST00000378839 IGF2BP2-AS1Q96M15 143 aa10.71□□□□□ -0.7
CCDC3-202ENST00000378839 DNAJC4Q9NNZ3 241 aa10.71□□□□□ -0.7
CCDC3-202ENST00000378839 TMEM167BQ9NRX6 74 aa10.71□□□□□ -0.7
CCDC3-202ENST00000378839 TRAPPC1Q9Y5R8 145 aa10.71□□□□□ -0.7
CCDC3-202ENST00000378839 ANKHD1Q8IWZ3 2542 aaKnown RBP10.7□□□□□ -0.7
CCDC3-202ENST00000378839 TRAV34A0A0B4J273 112 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 MT-CO2P00403 227 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 ADMP35318 185 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 FBXL19-AS1Q494R0 122 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 PVRIGQ6DKI7 326 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 ERASQ7Z444 233 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 THAP8Q8NA92 274 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 RNASEH2CQ8TDP1 164 aaKnown RBP10.7□□□□□ -0.7
CCDC3-202ENST00000378839 ZNF355PQ9NSJ1 428 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 TP53TG3Q9ULZ0 132 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 SPTA1P02549 2419 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 TCRBV4S1A1TA0A5B7 111 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 M0R143 59 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 CBLN1P23435 193 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 RNF151Q2KHN1 245 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 NHLRC2Q8NBF2 726 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 OR5AU1Q8NGC0 362 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 IL36BQ9NZH7 164 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 SIGLEC9Q9Y336 463 aa10.7□□□□□ -0.7
CCDC3-202ENST00000378839 CRYGCP07315 174 aa10.69□□□□□ -0.7
CCDC3-202ENST00000378839 MC5RP33032 325 aa10.69□□□□□ -0.7
CCDC3-202ENST00000378839 FXYD3Q14802 87 aa10.69□□□□□ -0.7
CCDC3-202ENST00000378839 VMA21Q3ZAQ7 101 aa10.69□□□□□ -0.7
CCDC3-202ENST00000378839 TPRP12270 2363 aaKnown RBP10.69□□□□□ -0.7
CCDC3-202ENST00000378839 TEX22C9J3V5 150 aa10.69□□□□□ -0.7
CCDC3-202ENST00000378839 LY6LH3BQJ8 138 aa10.69□□□□□ -0.7
CCDC3-202ENST00000378839 TNXAQ16473 311 aa10.69□□□□□ -0.7
CCDC3-202ENST00000378839 ARL2-SNX15V9GYD0 113 aa10.69□□□□□ -0.7
CCDC3-202ENST00000378839 PPIAL4CA0A0B4J2A2 164 aa10.69□□□□□ -0.7
CCDC3-202ENST00000378839 PPIAL4GP0DN37 164 aa10.69□□□□□ -0.7
CCDC3-202ENST00000378839 GNG4P50150 75 aa10.69□□□□□ -0.7
CCDC3-202ENST00000378839 CNN1P51911 297 aaKnown RBP10.69□□□□□ -0.7
CCDC3-202ENST00000378839 LINC00310P59036 64 aa10.69□□□□□ -0.7
CCDC3-202ENST00000378839 LY96Q9Y6Y9 160 aa10.69□□□□□ -0.7
CCDC3-202ENST00000378839 GRIFINA4D1Z8 144 aa10.68□□□□□ -0.7
CCDC3-202ENST00000378839 LGALS7P47929 136 aa10.68□□□□□ -0.7
CCDC3-202ENST00000378839 YPEL3P61236 119 aaPredicted RBP10.68□□□□□ -0.7
CCDC3-202ENST00000378839 TOMM20LQ6UXN7 152 aa10.68□□□□□ -0.7
CCDC3-202ENST00000378839 FXYD5Q96DB9 178 aa10.68□□□□□ -0.7
CCDC3-202ENST00000378839 C19orf24Q9BVV8 132 aa10.68□□□□□ -0.7
CCDC3-202ENST00000378839 LOC102724200A0A096LPH7 203 aaPredicted RBP10.68□□□□□ -0.7
CCDC3-202ENST00000378839 A0A1W2PRE2 83 aa10.68□□□□□ -0.7
CCDC3-202ENST00000378839 COMPP49747 757 aaPredicted RBP10.68□□□□□ -0.7
CCDC3-202ENST00000378839 ERVFC1-1P60608 527 aa10.68□□□□□ -0.7
CCDC3-202ENST00000378839 UBE2L3P68036 154 aaKnown RBP10.68□□□□□ -0.7
CCDC3-202ENST00000378839 C10orf113Q5VZT2 155 aa10.68□□□□□ -0.7
CCDC3-202ENST00000378839 TEX45Q8NA69 505 aa10.68□□□□□ -0.7
CCDC3-202ENST00000378839 FAM168AQ92567 244 aa10.68□□□□□ -0.7
CCDC3-202ENST00000378839 CLEC7AQ9BXN2 247 aa10.68□□□□□ -0.7
CCDC3-202ENST00000378839 FBXL15Q9H469 300 aa10.68□□□□□ -0.7
CCDC3-202ENST00000378839 CBY1Q9Y3M2 126 aa10.68□□□□□ -0.7
CCDC3-202ENST00000378839 INSIG2Q9Y5U4 225 aa10.68□□□□□ -0.7
CCDC3-202ENST00000378839 PIEZO1Q92508 2521 aa10.68□□□□□ -0.7
CCDC3-202ENST00000378839 MMD2Q8IY49 270 aa10.67□□□□□ -0.7
CCDC3-202ENST00000378839 MRPL32Q9BYC8 188 aaKnown RBP10.67□□□□□ -0.7
CCDC3-202ENST00000378839 COX7A2P2O60397 106 aa10.67□□□□□ -0.7
CCDC3-202ENST00000378839 SPINK4O60575 86 aa10.67□□□□□ -0.7
CCDC3-202ENST00000378839 TAS2R45P59539 299 aa10.67□□□□□ -0.7
CCDC3-202ENST00000378839 ZNF329Q86UD4 541 aa10.67□□□□□ -0.7
CCDC3-202ENST00000378839 ST6GALNAC3Q8NDV1 305 aa10.67□□□□□ -0.7
CCDC3-202ENST00000378839 TBX15Q96SF7 602 aa10.67□□□□□ -0.7
CCDC3-202ENST00000378839 F2Z2F3 143 aa10.67□□□□□ -0.7
CCDC3-202ENST00000378839 CA1P00915 261 aaPredicted RBP10.67□□□□□ -0.7
CCDC3-202ENST00000378839 GCGP01275 180 aa10.67□□□□□ -0.7
CCDC3-202ENST00000378839 UCNP55089 124 aa10.67□□□□□ -0.7
CCDC3-202ENST00000378839 SLC35B1P78383 322 aa10.67□□□□□ -0.7
CCDC3-202ENST00000378839 LINC00305Q7Z4B0 112 aa10.67□□□□□ -0.7
CCDC3-202ENST00000378839 OR8I2Q8N0Y5 310 aa10.67□□□□□ -0.7
CCDC3-202ENST00000378839 CHODLQ9H9P2 273 aa10.67□□□□□ -0.7
CCDC3-202ENST00000378839 A0A1W2PPR1 153 aa10.66□□□□□ -0.7
CCDC3-202ENST00000378839 CD24P25063 80 aa10.66□□□□□ -0.7
CCDC3-202ENST00000378839 RPL27AP46776 148 aaKnown RBP10.66□□□□□ -0.7
CCDC3-202ENST00000378839 GNG5P63218 68 aa10.66□□□□□ -0.7
CCDC3-202ENST00000378839 LEMD1Q68G75 181 aa10.66□□□□□ -0.7
CCDC3-202ENST00000378839 GBGT1Q8N5D6 347 aa10.66□□□□□ -0.7
CCDC3-202ENST00000378839 LY6G5BQ8NDX9 201 aa10.66□□□□□ -0.7
CCDC3-202ENST00000378839 BEND2Q8NDZ0 799 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms