RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 FOXC1Q12948 553 aa15.71■□□□□ 0.11
SHROOM1-202ENST00000378676 IBA57Q5T440 356 aaKnown RBP15.71■□□□□ 0.11
SHROOM1-202ENST00000378676 ARL6IP6Q8N6S5 226 aa15.71■□□□□ 0.11
SHROOM1-202ENST00000378676 RNF2Q99496 336 aa15.71■□□□□ 0.11
SHROOM1-202ENST00000378676 SHISA9B4DS77 424 aa15.7■□□□□ 0.1
SHROOM1-202ENST00000378676 E7EQL1 145 aa15.7■□□□□ 0.1
SHROOM1-202ENST00000378676 FSTL3O95633 263 aa15.7■□□□□ 0.1
SHROOM1-202ENST00000378676 ZNF137PP52743 207 aa15.7■□□□□ 0.1
SHROOM1-202ENST00000378676 TPPP2P59282 170 aa15.7■□□□□ 0.1
SHROOM1-202ENST00000378676 C10orf113Q5VZT2 155 aa15.7■□□□□ 0.1
SHROOM1-202ENST00000378676 TMEM136Q6ZRR5 245 aa15.7■□□□□ 0.1
SHROOM1-202ENST00000378676 C19orf35Q6ZS72 473 aa15.7■□□□□ 0.1
SHROOM1-202ENST00000378676 THAP8Q8NA92 274 aa15.7■□□□□ 0.1
SHROOM1-202ENST00000378676 DYNLRB1Q9NP97 96 aa15.7■□□□□ 0.1
SHROOM1-202ENST00000378676 TRBV9A0A0B4J1U6 114 aa15.7■□□□□ 0.1
SHROOM1-202ENST00000378676 PLAUP00749 431 aa15.7■□□□□ 0.1
SHROOM1-202ENST00000378676 CA1P00915 261 aaPredicted RBP15.7■□□□□ 0.1
SHROOM1-202ENST00000378676 IGHV1-8P0DP01 117 aa15.7■□□□□ 0.1
SHROOM1-202ENST00000378676 PRB3Q04118 309 aaPredicted RBP15.7■□□□□ 0.1
SHROOM1-202ENST00000378676 PAXXQ9BUH6 204 aa15.7■□□□□ 0.1
SHROOM1-202ENST00000378676 ANKRD39Q53RE8 183 aa15.69■□□□□ 0.1
SHROOM1-202ENST00000378676 ZNF329Q86UD4 541 aa15.69■□□□□ 0.1
SHROOM1-202ENST00000378676 BAGE3Q86Y29 109 aa15.69■□□□□ 0.1
SHROOM1-202ENST00000378676 BAGE2Q86Y30 109 aa15.69■□□□□ 0.1
SHROOM1-202ENST00000378676 C11orf42Q8N5U0 333 aa15.69■□□□□ 0.1
SHROOM1-202ENST00000378676 NAT8BQ9UHF3 227 aa15.69■□□□□ 0.1
SHROOM1-202ENST00000378676 ZNF705FA8MVS1 300 aaPredicted RBP15.69■□□□□ 0.1
SHROOM1-202ENST00000378676 MOSP00540 346 aa15.69■□□□□ 0.1
SHROOM1-202ENST00000378676 ZNF705DP0CH99 300 aaPredicted RBP15.69■□□□□ 0.1
SHROOM1-202ENST00000378676 ZNF705BP0CI00 300 aaPredicted RBP15.69■□□□□ 0.1
SHROOM1-202ENST00000378676 Q0VG73 95 aa15.69■□□□□ 0.1
SHROOM1-202ENST00000378676 KIAA1644Q3SXP7 199 aa15.69■□□□□ 0.1
SHROOM1-202ENST00000378676 VMA21Q3ZAQ7 101 aa15.69■□□□□ 0.1
SHROOM1-202ENST00000378676 MRPL54Q6P161 138 aaKnown RBP15.69■□□□□ 0.1
SHROOM1-202ENST00000378676 TBX15Q96SF7 602 aa15.69■□□□□ 0.1
SHROOM1-202ENST00000378676 GNB4Q9HAV0 340 aa15.69■□□□□ 0.1
SHROOM1-202ENST00000378676 SERTAD4Q9NUC0 356 aa15.69■□□□□ 0.1
SHROOM1-202ENST00000378676 C22orf46C9J442 243 aa15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 OR1L4Q8NGR5 311 aa15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 FAM168AQ92567 244 aa15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 FXYD5Q96DB9 178 aa15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 HSPB9Q9BQS6 159 aa15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 KAAG1Q9UBP8 84 aa15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 CDC42EP3Q9UKI2 254 aa15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 SMIM27A0A1W2PRY6 76 aa15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 ENSAO43768 121 aaKnown RBP15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 CNTFRP26992 372 aa15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 CDKN1AP38936 164 aa15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 SUB1P53999 127 aaKnown RBP eCLIP15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 MFAP2P55001 183 aa15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 PAFAH1B2P68402 229 aa15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 LHFPL4Q7Z7J7 247 aa15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 SCNM1Q9BWG6 230 aa15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 ZNF835Q9Y2P0 537 aa15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 AMMECR1Q9Y4X0 333 aaPredicted RBP15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 RNF114Q9Y508 228 aa15.68■□□□□ 0.1
SHROOM1-202ENST00000378676 TRAV34A0A0B4J273 112 aa15.67■□□□□ 0.1
SHROOM1-202ENST00000378676 IGLC7A0M8Q6 106 aa15.67■□□□□ 0.1
SHROOM1-202ENST00000378676 PCP4P48539 62 aa15.67■□□□□ 0.1
SHROOM1-202ENST00000378676 BPIFB3P59826 476 aa15.67■□□□□ 0.1
SHROOM1-202ENST00000378676 HCP5Q6MZN7 132 aa15.67■□□□□ 0.1
SHROOM1-202ENST00000378676 SSBP3Q9BWW4 388 aaPredicted RBP15.67■□□□□ 0.1
SHROOM1-202ENST00000378676 APELAP0DMC3 54 aa15.67■□□□□ 0.1
SHROOM1-202ENST00000378676 RANP62826 216 aaKnown RBP15.67■□□□□ 0.1
SHROOM1-202ENST00000378676 WDR73Q6P4I2 378 aa15.67■□□□□ 0.1
SHROOM1-202ENST00000378676 TOMM20LQ6UXN7 152 aa15.67■□□□□ 0.1
SHROOM1-202ENST00000378676 TMEM133Q9H2Q1 129 aa15.67■□□□□ 0.1
SHROOM1-202ENST00000378676 PEX7O00628 323 aa15.66■□□□□ 0.1
SHROOM1-202ENST00000378676 MT-ND6P03923 174 aa15.66■□□□□ 0.1
SHROOM1-202ENST00000378676 GNG5P63218 68 aa15.66■□□□□ 0.1
SHROOM1-202ENST00000378676 TPTE2P1Q5T6R2 138 aa15.66■□□□□ 0.1
SHROOM1-202ENST00000378676 AMY1AP04745 511 aa15.65■□□□□ 0.1
SHROOM1-202ENST00000378676 NPSP0C0P6 89 aa15.65■□□□□ 0.1
SHROOM1-202ENST00000378676 C21orf62-AS1Q17RA5 79 aa15.65■□□□□ 0.1
SHROOM1-202ENST00000378676 LINC00305Q7Z4B0 112 aa15.65■□□□□ 0.1
SHROOM1-202ENST00000378676 SSUH2Q9Y2M2 353 aa15.65■□□□□ 0.1
SHROOM1-202ENST00000378676 IGHV1-69-2A0A0G2JMI3 117 aa15.65■□□□□ 0.1
SHROOM1-202ENST00000378676 MC5RP33032 325 aa15.65■□□□□ 0.1
SHROOM1-202ENST00000378676 TDRG1Q3Y452 100 aa15.65■□□□□ 0.1
SHROOM1-202ENST00000378676 RCHY1Q96PM5 261 aa15.65■□□□□ 0.1
SHROOM1-202ENST00000378676 SAMD10Q9BYL1 202 aa15.64■□□□□ 0.09
SHROOM1-202ENST00000378676 IGHV3-21A0A0B4J1V1 117 aa15.64■□□□□ 0.09
SHROOM1-202ENST00000378676 LYNX1G3V0Z9 82 aa15.64■□□□□ 0.09
SHROOM1-202ENST00000378676 BMPR1BO00238 502 aa15.64■□□□□ 0.09
SHROOM1-202ENST00000378676 CRYGCP07315 174 aa15.64■□□□□ 0.09
SHROOM1-202ENST00000378676 LYNX1P0DP58 116 aa15.64■□□□□ 0.09
SHROOM1-202ENST00000378676 TNXAQ16473 311 aa15.64■□□□□ 0.09
SHROOM1-202ENST00000378676 MBD6Q96DN6 1003 aa15.64■□□□□ 0.09
SHROOM1-202ENST00000378676 IZUMO1RA6ND01 250 aa15.63■□□□□ 0.09
SHROOM1-202ENST00000378676 ORM2P19652 201 aa15.63■□□□□ 0.09
SHROOM1-202ENST00000378676 MYCNOSP40205 109 aa15.63■□□□□ 0.09
SHROOM1-202ENST00000378676 COMPP49747 757 aaPredicted RBP15.63■□□□□ 0.09
SHROOM1-202ENST00000378676 ZNF841Q6ZN19 808 aa15.63■□□□□ 0.09
SHROOM1-202ENST00000378676 C20orf144Q9BQM9 153 aa15.63■□□□□ 0.09
SHROOM1-202ENST00000378676 TNFRSF19Q9NS68 423 aa15.63■□□□□ 0.09
SHROOM1-202ENST00000378676 FBXL7Q9UJT9 491 aa15.63■□□□□ 0.09
SHROOM1-202ENST00000378676 VSTM5A8MXK1 200 aa15.63■□□□□ 0.09
SHROOM1-202ENST00000378676 TEX43Q6ZNM6 134 aa15.63■□□□□ 0.09
SHROOM1-202ENST00000378676 OR1B1Q8NGR6 318 aa15.63■□□□□ 0.09
SHROOM1-202ENST00000378676 IGHV2-26A0A0B4J1V2 119 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms