RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 NUDT11Q96G61 164 aa11.44□□□□□ -0.58
CLCNKA-202ENST00000375692 ZNF257Q9Y2Q1 563 aa11.44□□□□□ -0.58
CLCNKA-202ENST00000375692 ITPR1Q14643 2758 aa11.44□□□□□ -0.58
CLCNKA-202ENST00000375692 M0R1B8 84 aa11.44□□□□□ -0.58
CLCNKA-202ENST00000375692 ITGB1BP1O14713 200 aa11.44□□□□□ -0.58
CLCNKA-202ENST00000375692 REG1AP05451 166 aa11.44□□□□□ -0.58
CLCNKA-202ENST00000375692 TSPOP30536 169 aa11.44□□□□□ -0.58
CLCNKA-202ENST00000375692 UNQ5815/PRO19632Q6UWF5 114 aa11.44□□□□□ -0.58
CLCNKA-202ENST00000375692 KIR3DL3Q8N743 410 aa11.44□□□□□ -0.58
CLCNKA-202ENST00000375692 FAM216BQ8N7L0 139 aa11.44□□□□□ -0.58
CLCNKA-202ENST00000375692 ADTRPQ96IZ2 230 aa11.44□□□□□ -0.58
CLCNKA-202ENST00000375692 PSMB11A5LHX3 300 aa11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 CCL25O15444 150 aa11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 HSBP1O75506 76 aa11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 PLAUP00749 431 aa11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 GNG5P63218 68 aa11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 SEM1Q6ZVN7 128 aa11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 MBD6Q96DN6 1003 aa11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 PLSCR4Q9NRQ2 329 aa11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 PCNX1Q96RV3 2341 aa11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 VWC2LB2RUY7 222 aa11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 M0R2Z0 102 aa11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 RNASEKQ6P5S7 137 aaKnown RBP11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 SPATA12Q7Z6I5 190 aa11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 PNKDQ8N490 385 aa11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 KLHDC1Q8N7A1 406 aa11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 TP73-AS1Q9UF72 201 aa11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 SLC25A15Q9Y619 301 aa11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 PLXNB1O43157 2135 aa11.43□□□□□ -0.58
CLCNKA-202ENST00000375692 ROS1P08922 2347 aa11.42□□□□□ -0.58
CLCNKA-202ENST00000375692 FAM181BA6NEQ2 426 aa11.42□□□□□ -0.58
CLCNKA-202ENST00000375692 CD24P25063 80 aa11.42□□□□□ -0.58
CLCNKA-202ENST00000375692 RTL8BQ17RB0 113 aa11.42□□□□□ -0.58
CLCNKA-202ENST00000375692 PATE2Q6UY27 113 aa11.42□□□□□ -0.58
CLCNKA-202ENST00000375692 C19orf24Q9BVV8 132 aa11.42□□□□□ -0.58
CLCNKA-202ENST00000375692 COMMD5Q9GZQ3 224 aa11.42□□□□□ -0.58
CLCNKA-202ENST00000375692 C20orf202A1L168 122 aa11.42□□□□□ -0.58
CLCNKA-202ENST00000375692 REG1BP48304 166 aa11.42□□□□□ -0.58
CLCNKA-202ENST00000375692 ZNF841Q6ZN19 808 aa11.42□□□□□ -0.58
CLCNKA-202ENST00000375692 ZNF329Q86UD4 541 aa11.42□□□□□ -0.58
CLCNKA-202ENST00000375692 TNFRSF19Q9NS68 423 aa11.42□□□□□ -0.58
CLCNKA-202ENST00000375692 MRPL27Q9P0M9 148 aaKnown RBP11.42□□□□□ -0.58
CLCNKA-202ENST00000375692 PROCRQ9UNN8 238 aa11.42□□□□□ -0.58
CLCNKA-202ENST00000375692 TANC2Q9HCD6 1990 aa11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 SH2D7A6NKC9 451 aaPredicted RBP11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 IGLL1P15814 213 aa11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 PCP4P48539 62 aa11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 PTTG1IPP53801 180 aa11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 KLF3P57682 345 aaPredicted RBP11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 PMCHL1Q16048 86 aa11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 OR1L8Q8NGR8 309 aa11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 ALKBH7Q9BT30 221 aaPredicted RBP11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 PAXXQ9BUH6 204 aa11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 CLEC5AQ9NY25 188 aa11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 HIGD1CA8MV81 97 aa11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 M0QZ24 198 aa11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 PEX7O00628 323 aa11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 COX7A2P2O60397 106 aa11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 C10orf55Q5SWW7 151 aa11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 WIPF2Q8TF74 440 aaPredicted RBP11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 NPIPB3Q92617 1050 aa11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 GRAMD2BQ96HH9 432 aa11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 GAFA1Q96PS6 74 aa11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 FNDC4Q9H6D8 234 aaPredicted RBP11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 ADGRG4Q8IZF6 3080 aa11.41□□□□□ -0.58
CLCNKA-202ENST00000375692 ACACBO00763 2458 aa11.4□□□□□ -0.58
CLCNKA-202ENST00000375692 SLC25A48Q6ZT89 311 aaKnown RBP11.4□□□□□ -0.58
CLCNKA-202ENST00000375692 ST6GALNAC6Q969X2 333 aa11.4□□□□□ -0.58
CLCNKA-202ENST00000375692 MRPL32Q9BYC8 188 aaKnown RBP11.4□□□□□ -0.58
CLCNKA-202ENST00000375692 MRPL20Q9BYC9 149 aaKnown RBP11.4□□□□□ -0.58
CLCNKA-202ENST00000375692 MRPL36Q9P0J6 103 aaKnown RBP11.4□□□□□ -0.58
CLCNKA-202ENST00000375692 FAM215AQ9Y5M1 114 aa11.4□□□□□ -0.58
CLCNKA-202ENST00000375692 KALRNO60229 2985 aa11.4□□□□□ -0.58
CLCNKA-202ENST00000375692 PKD1L2Q7Z442 2459 aa11.4□□□□□ -0.58
CLCNKA-202ENST00000375692 C10orf113Q5VZT2 155 aa11.4□□□□□ -0.58
CLCNKA-202ENST00000375692 TCF24Q7RTU0 167 aa11.4□□□□□ -0.58
CLCNKA-202ENST00000375692 OR5B3Q8NH48 314 aa11.4□□□□□ -0.58
CLCNKA-202ENST00000375692 NDUFA4L2Q9NRX3 87 aa11.4□□□□□ -0.58
CLCNKA-202ENST00000375692 RNF7Q9UBF6 113 aa11.4□□□□□ -0.58
CLCNKA-202ENST00000375692 RPUSD1Q9UJJ7 312 aaKnown RBP11.4□□□□□ -0.58
CLCNKA-202ENST00000375692 RPH3ALQ9UNE2 315 aa11.4□□□□□ -0.58
CLCNKA-202ENST00000375692 RAI1Q7Z5J4 1906 aaPredicted RBP11.4□□□□□ -0.59
CLCNKA-202ENST00000375692 COL6A6A6NMZ7 2263 aa11.39□□□□□ -0.59
CLCNKA-202ENST00000375692 TRAV9-2A0A087WT02 112 aa11.39□□□□□ -0.59
CLCNKA-202ENST00000375692 C2orf70A6NJV1 201 aa11.39□□□□□ -0.59
CLCNKA-202ENST00000375692 OR8B3Q8NGG8 313 aa11.39□□□□□ -0.59
CLCNKA-202ENST00000375692 OR2D3Q8NGH3 330 aa11.39□□□□□ -0.59
CLCNKA-202ENST00000375692 RNASE8Q8TDE3 154 aaKnown RBP11.39□□□□□ -0.59
CLCNKA-202ENST00000375692 URB1-AS1Q96HZ7 61 aa11.39□□□□□ -0.59
CLCNKA-202ENST00000375692 HARBI1Q96MB7 349 aa11.39□□□□□ -0.59
CLCNKA-202ENST00000375692 OR8B2Q96RD0 313 aa11.39□□□□□ -0.59
CLCNKA-202ENST00000375692 BET1LQ9NYM9 111 aa11.39□□□□□ -0.59
CLCNKA-202ENST00000375692 ABCA1O95477 2261 aa11.39□□□□□ -0.59
CLCNKA-202ENST00000375692 FOXA3P55318 350 aaPredicted RBP11.39□□□□□ -0.59
CLCNKA-202ENST00000375692 UBE2G1P62253 170 aa11.39□□□□□ -0.59
CLCNKA-202ENST00000375692 WT1-ASQ06250 92 aa11.39□□□□□ -0.59
CLCNKA-202ENST00000375692 FAM231DQ6ZW35 169 aa11.39□□□□□ -0.59
CLCNKA-202ENST00000375692 ORAOV1Q8WV07 137 aa11.39□□□□□ -0.59
CLCNKA-202ENST00000375692 BLNKQ8WV28 456 aa11.39□□□□□ -0.59
CLCNKA-202ENST00000375692 RAB9BQ9NP90 201 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms