RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 FGFBP3Q8TAT2 258 aa16.25■□□□□ 0.19
CCDC88B-202ENST00000356786 EFNA2O43921 213 aa16.25■□□□□ 0.19
CCDC88B-202ENST00000356786 DPM2O94777 84 aa16.25■□□□□ 0.19
CCDC88B-202ENST00000356786 C5orf24Q7Z6I8 188 aa16.25■□□□□ 0.19
CCDC88B-202ENST00000356786 SNHG12Q9BXW3 62 aa16.25■□□□□ 0.19
CCDC88B-202ENST00000356786 C21orf62Q9NYP8 219 aa16.25■□□□□ 0.19
CCDC88B-202ENST00000356786 CCL21O00585 134 aa16.24■□□□□ 0.19
CCDC88B-202ENST00000356786 MESP1Q9BRJ9 268 aa16.24■□□□□ 0.19
CCDC88B-202ENST00000356786 SEPSECSQ9HD40 501 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-202ENST00000356786 HEATR1Q9H583 2144 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-202ENST00000356786 hDV102S1A0JD36 115 aa16.24■□□□□ 0.19
CCDC88B-202ENST00000356786 SUMO2P61956 95 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-202ENST00000356786 ATP5L2Q7Z4Y8 100 aa16.24■□□□□ 0.19
CCDC88B-202ENST00000356786 TEX29Q8N6K0 151 aa16.24■□□□□ 0.19
CCDC88B-202ENST00000356786 LOXL4Q96JB6 756 aa16.24■□□□□ 0.19
CCDC88B-202ENST00000356786 TRAV5A0A0B4J249 113 aa16.24■□□□□ 0.19
CCDC88B-202ENST00000356786 IGHV1-69-2A0A0G2JMI3 117 aa16.24■□□□□ 0.19
CCDC88B-202ENST00000356786 C5orf63A6NC05 138 aa16.24■□□□□ 0.19
CCDC88B-202ENST00000356786 IGKV3-20P01619 116 aa16.23■□□□□ 0.19
CCDC88B-202ENST00000356786 ATP5G2Q06055 141 aa16.23■□□□□ 0.19
CCDC88B-202ENST00000356786 ANAPC13Q9BS18 74 aa16.23■□□□□ 0.19
CCDC88B-202ENST00000356786 PRDM6Q9NQX0 595 aa16.23■□□□□ 0.19
CCDC88B-202ENST00000356786 ASIPP42127 132 aa16.23■□□□□ 0.19
CCDC88B-202ENST00000356786 DMRTA2Q96SC8 542 aa16.23■□□□□ 0.19
CCDC88B-202ENST00000356786 A0A087X0K7 114 aa16.23■□□□□ 0.19
CCDC88B-202ENST00000356786 A0A0G2JLM5 398 aa16.23■□□□□ 0.19
CCDC88B-202ENST00000356786 TCRBV4S1A1TA0A5B7 111 aa16.23■□□□□ 0.19
CCDC88B-202ENST00000356786 DMRTC2Q8IXT2 367 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-202ENST00000356786 FGF11Q92914 225 aa16.23■□□□□ 0.19
CCDC88B-202ENST00000356786 FABP5P3A8MUU1 101 aa16.23■□□□□ 0.19
CCDC88B-202ENST00000356786 PSG8Q9UQ74 426 aa16.23■□□□□ 0.19
CCDC88B-202ENST00000356786 DOCK11Q5JSL3 2073 aa16.23■□□□□ 0.19
CCDC88B-202ENST00000356786 IGHV3OR16-12A0A075B7B8 117 aa16.22■□□□□ 0.19
CCDC88B-202ENST00000356786 UBE2L6O14933 153 aa16.22■□□□□ 0.19
CCDC88B-202ENST00000356786 ATRXP46100 2492 aa16.22■□□□□ 0.19
CCDC88B-202ENST00000356786 SHANK1Q9Y566 2161 aa16.22■□□□□ 0.19
CCDC88B-202ENST00000356786 PSMB11A5LHX3 300 aa16.22■□□□□ 0.19
CCDC88B-202ENST00000356786 PRCDQ00LT1 54 aa16.22■□□□□ 0.19
CCDC88B-202ENST00000356786 MRPL52Q86TS9 123 aaKnown RBP16.22■□□□□ 0.19
CCDC88B-202ENST00000356786 FAM106AQ4KMX7 169 aa16.22■□□□□ 0.19
CCDC88B-202ENST00000356786 IGLV3-12A0A075B6K2 115 aa16.22■□□□□ 0.19
CCDC88B-202ENST00000356786 IGLV3-32A0A0A0MS00 114 aa16.22■□□□□ 0.19
CCDC88B-202ENST00000356786 IGHV2OR16-5A0A0B4J2B6 119 aa16.22■□□□□ 0.19
CCDC88B-202ENST00000356786 GAGE13Q4V321 117 aa16.22■□□□□ 0.19
CCDC88B-202ENST00000356786 OR9G4Q8NGQ1 327 aa16.22■□□□□ 0.19
CCDC88B-202ENST00000356786 EEF1AKMT3Q96AZ1 226 aa16.22■□□□□ 0.19
CCDC88B-202ENST00000356786 NXT2Q9NPJ8 142 aaKnown RBP16.22■□□□□ 0.19
CCDC88B-202ENST00000356786 CCL3L1P16619 93 aa16.21■□□□□ 0.19
CCDC88B-202ENST00000356786 OR5AN1Q8NGI8 311 aa16.21■□□□□ 0.19
CCDC88B-202ENST00000356786 PKDREJQ9NTG1 2253 aa16.21■□□□□ 0.19
CCDC88B-202ENST00000356786 CEACAM4O75871 244 aa16.21■□□□□ 0.19
CCDC88B-202ENST00000356786 FOXF2Q12947 444 aa16.21■□□□□ 0.19
CCDC88B-202ENST00000356786 FBXL7Q9UJT9 491 aa16.21■□□□□ 0.19
CCDC88B-202ENST00000356786 POLR3KQ9Y2Y1 108 aaPredicted RBP16.21■□□□□ 0.19
CCDC88B-202ENST00000356786 VWA8A3KMH1 1905 aa16.21■□□□□ 0.19
CCDC88B-202ENST00000356786 SRSF7Q16629 238 aaKnown RBP eCLIP16.21■□□□□ 0.19
CCDC88B-202ENST00000356786 JMJD8Q96S16 334 aa16.21■□□□□ 0.19
CCDC88B-202ENST00000356786 DPM3Q9P2X0 92 aa16.21■□□□□ 0.18
CCDC88B-202ENST00000356786 PSG1P11464 419 aa16.2■□□□□ 0.18
CCDC88B-202ENST00000356786 PRR7Q8TB68 274 aa16.2■□□□□ 0.18
CCDC88B-202ENST00000356786 HOXA3O43365 443 aaPredicted RBP16.2■□□□□ 0.18
CCDC88B-202ENST00000356786 PPBPP02775 128 aa16.2■□□□□ 0.18
CCDC88B-202ENST00000356786 IGHV1-2P23083 117 aa16.2■□□□□ 0.18
CCDC88B-202ENST00000356786 TMEM95Q3KNT9 176 aa16.2■□□□□ 0.18
CCDC88B-202ENST00000356786 ZIC4Q8N9L1 334 aa16.2■□□□□ 0.18
CCDC88B-202ENST00000356786 OR13C6PQ8NH95 151 aa16.2■□□□□ 0.18
CCDC88B-202ENST00000356786 LINC00312Q9Y6C7 94 aa16.2■□□□□ 0.18
CCDC88B-202ENST00000356786 IGHV2-5P01817 119 aa16.2■□□□□ 0.18
CCDC88B-202ENST00000356786 GUSBP1Q15486 140 aa16.2■□□□□ 0.18
CCDC88B-202ENST00000356786 MRPL14Q6P1L8 145 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-202ENST00000356786 FAM90A1Q86YD7 464 aa16.2■□□□□ 0.18
CCDC88B-202ENST00000356786 ZNF581Q9P0T4 197 aa16.2■□□□□ 0.18
CCDC88B-202ENST00000356786 LOC105371242A0A075B767 164 aa16.2■□□□□ 0.18
CCDC88B-202ENST00000356786 GAGE12BA1L429 117 aa16.2■□□□□ 0.18
CCDC88B-202ENST00000356786 NABP1Q96AH0 204 aa16.19■□□□□ 0.18
CCDC88B-202ENST00000356786 PPIFP30405 207 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-202ENST00000356786 BCL6BQ8N143 479 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-202ENST00000356786 FANCMQ8IYD8 2048 aa16.19■□□□□ 0.18
CCDC88B-202ENST00000356786 IGKV3OR2-268A0A0C4DH90 116 aa16.19■□□□□ 0.18
CCDC88B-202ENST00000356786 A0A1B0GUS0 222 aa16.19■□□□□ 0.18
CCDC88B-202ENST00000356786 PFN1P07737 140 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-202ENST00000356786 ERVK11-1P61568 191 aa16.19■□□□□ 0.18
CCDC88B-202ENST00000356786 MGST2Q99735 147 aa16.19■□□□□ 0.18
CCDC88B-202ENST00000356786 C20orf144Q9BQM9 153 aa16.19■□□□□ 0.18
CCDC88B-202ENST00000356786 GTSF1LQ9H1H1 148 aa16.19■□□□□ 0.18
CCDC88B-202ENST00000356786 A0A0G2JRQ6 117 aa16.18■□□□□ 0.18
CCDC88B-202ENST00000356786 FAM90A9PA6NNJ1 464 aa16.18■□□□□ 0.18
CCDC88B-202ENST00000356786 IGKCP01834 107 aa16.18■□□□□ 0.18
CCDC88B-202ENST00000356786 FAM71F2Q6NXP2 309 aa16.18■□□□□ 0.18
CCDC88B-202ENST00000356786 PHF3Q92576 2039 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-202ENST00000356786 OR10W1Q8NGF6 305 aa16.18■□□□□ 0.18
CCDC88B-202ENST00000356786 MOB4Q9Y3A3 225 aa16.18■□□□□ 0.18
CCDC88B-202ENST00000356786 RIF1Q5UIP0 2472 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-202ENST00000356786 FOXH1O75593 365 aa16.18■□□□□ 0.18
CCDC88B-202ENST00000356786 TMEM262E9PQX1 116 aa16.18■□□□□ 0.18
CCDC88B-202ENST00000356786 FAM27E3Q08E93 113 aa16.17■□□□□ 0.18
CCDC88B-202ENST00000356786 Q6ZRM9 215 aa16.17■□□□□ 0.18
CCDC88B-202ENST00000356786 RNF115Q9Y4L5 304 aa16.17■□□□□ 0.18
CCDC88B-202ENST00000356786 IGKV1D-33P01593 117 aa16.17■□□□□ 0.18
CCDC88B-202ENST00000356786 IGKV1-33P01594 117 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms