RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 MIR17HGQ75NE6 70 aa8.2□□□□□ -1.1
USP54-201ENST00000339859 DNAJC13O75165 2243 aa8.2□□□□□ -1.1
USP54-201ENST00000339859 NPIPB5A8MRT5 1133 aa8.2□□□□□ -1.1
USP54-201ENST00000339859 CD5LO43866 347 aa8.2□□□□□ -1.1
USP54-201ENST00000339859 ZNF56Q15929 161 aa8.2□□□□□ -1.1
USP54-201ENST00000339859 OR5AN1Q8NGI8 311 aa8.2□□□□□ -1.1
USP54-201ENST00000339859 CHAC2Q8WUX2 184 aa8.2□□□□□ -1.1
USP54-201ENST00000339859 C1QTNF4Q9BXJ3 329 aa8.2□□□□□ -1.1
USP54-201ENST00000339859 TRGV11A0A075B6L2 103 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 IGHV4-59P01825 116 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 SPRNQ5BIV9 151 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 EMP1P54849 157 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 LY6G6FQ5SQ64 297 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 STPG2Q8N412 459 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 KLHDC1Q8N7A1 406 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 SPTA1P02549 2419 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 LOC102723971A0A1B0GUV8 181 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 APCSP02743 223 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 ZNRD1Q9P1U0 126 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 MAP1BP46821 2468 aaKnown RBP8.19□□□□□ -1.1
USP54-201ENST00000339859 H3BQ15 152 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 PEX7O00628 323 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 GATA2P23769 480 aaPredicted RBP8.19□□□□□ -1.1
USP54-201ENST00000339859 SGMS2Q8NHU3 365 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 TRGV2A0A075B6R0 118 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 CENPVL3A0A0U1RRI6 287 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 IGKV1-16P04430 117 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 IGHV4-38-2P0DP08 117 aa8.19□□□□□ -1.1
USP54-201ENST00000339859 SYNJ2BPP57105 145 aa8.18□□□□□ -1.1
USP54-201ENST00000339859 CNTFRP26992 372 aa8.18□□□□□ -1.1
USP54-201ENST00000339859 MRPL54Q6P161 138 aaKnown RBP8.18□□□□□ -1.1
USP54-201ENST00000339859 Q6ZSR3 168 aa8.18□□□□□ -1.1
USP54-201ENST00000339859 TMEM86BQ8N661 226 aa8.18□□□□□ -1.1
USP54-201ENST00000339859 IGKV1-5P01602 117 aa8.18□□□□□ -1.1
USP54-201ENST00000339859 BTCP35070 178 aa8.18□□□□□ -1.1
USP54-201ENST00000339859 SUPT4H1P63272 117 aaKnown RBP8.18□□□□□ -1.1
USP54-201ENST00000339859 NMSQ5H8A3 153 aa8.18□□□□□ -1.1
USP54-201ENST00000339859 FOXC2Q99958 501 aa8.18□□□□□ -1.1
USP54-201ENST00000339859 MPTX1A8MV57 137 aa8.18□□□□□ -1.1
USP54-201ENST00000339859 HTN3P15516 51 aa8.18□□□□□ -1.1
USP54-201ENST00000339859 GCGP01275 180 aa8.18□□□□□ -1.1
USP54-201ENST00000339859 HEATR5AQ86XA9 2040 aa8.17□□□□□ -1.1
USP54-201ENST00000339859 KLF17Q5JT82 389 aaPredicted RBP8.17□□□□□ -1.1
USP54-201ENST00000339859 C9orf139Q6ZV77 190 aa8.17□□□□□ -1.1
USP54-201ENST00000339859 C5orf24Q7Z6I8 188 aa8.17□□□□□ -1.1
USP54-201ENST00000339859 SRD5A3Q9H8P0 318 aa8.17□□□□□ -1.1
USP54-201ENST00000339859 FNDC10F2Z333 226 aa8.17□□□□□ -1.1
USP54-201ENST00000339859 PSG1P11464 419 aa8.17□□□□□ -1.1
USP54-201ENST00000339859 ASCL2Q99929 193 aa8.17□□□□□ -1.1
USP54-201ENST00000339859 TRAV21A0A0B4J279 112 aa8.17□□□□□ -1.1
USP54-201ENST00000339859 RPL35P42766 123 aaKnown RBP8.17□□□□□ -1.1
USP54-201ENST00000339859 CIARTQ8N365 385 aaPredicted RBP8.17□□□□□ -1.1
USP54-201ENST00000339859 MYOZ3Q8TDC0 251 aa8.17□□□□□ -1.1
USP54-201ENST00000339859 TMEM218A2RU14 115 aa8.17□□□□□ -1.1
USP54-201ENST00000339859 SGK494Q96LW2 274 aa8.17□□□□□ -1.1
USP54-201ENST00000339859 RHPN1-AS1Q9BWJ2 59 aa8.17□□□□□ -1.1
USP54-201ENST00000339859 IGKV1-6A0A0C4DH72 117 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 C9JCJ5 164 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 AWAT1Q58HT5 328 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 FAM74A4Q5TZK3 123 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 OR11H1Q8NG94 326 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 ANAPC10Q9UM13 185 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 HEATR1Q9H583 2144 aaKnown RBP8.16□□□□□ -1.1
USP54-201ENST00000339859 HERVK_113P61574 105 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 GLMPQ8WWB7 406 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 RCC1LQ96I51 464 aaKnown RBP8.16□□□□□ -1.1
USP54-201ENST00000339859 TBX15Q96SF7 602 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 SLC25A39Q9BZJ4 359 aaPredicted RBP8.16□□□□□ -1.1
USP54-201ENST00000339859 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.16□□□□□ -1.1
USP54-201ENST00000339859 RPL35AP18077 110 aaKnown RBP8.16□□□□□ -1.1
USP54-201ENST00000339859 Q8NFD4 153 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 OR11H4Q8NGC9 324 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 PGLYRP4Q96LB8 373 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 ARL2-SNX15V9GYD0 113 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 OVOL3O00110 214 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 RNASE2P10153 161 aaKnown RBP8.16□□□□□ -1.1
USP54-201ENST00000339859 PMCHP20382 165 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 FOXE3Q13461 319 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 C1orf147Q96MC9 270 aaPredicted RBP8.16□□□□□ -1.1
USP54-201ENST00000339859 WDR83OSQ9Y284 106 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 ATG2AQ2TAZ0 1938 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 A0A1W2PPI3 338 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 TSTD3H0UI37 97 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.16□□□□□ -1.1
USP54-201ENST00000339859 C19orf35Q6ZS72 473 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 UBE2DNLQ8IWF7 75 aa8.16□□□□□ -1.1
USP54-201ENST00000339859 IGHV4-31P0DP07 118 aa8.15□□□□□ -1.1
USP54-201ENST00000339859 AREGP15514 252 aa8.15□□□□□ -1.1
USP54-201ENST00000339859 DLX1P56177 255 aa8.15□□□□□ -1.1
USP54-201ENST00000339859 C1QL4Q86Z23 238 aa8.15□□□□□ -1.1
USP54-201ENST00000339859 ATG101Q9BSB4 218 aa8.15□□□□□ -1.1
USP54-201ENST00000339859 AURKAIP1Q9NWT8 199 aaPredicted RBP8.15□□□□□ -1.1
USP54-201ENST00000339859 RPL15P61313 204 aaKnown RBP8.15□□□□□ -1.1
USP54-201ENST00000339859 C19orf54Q5BKX5 351 aa8.15□□□□□ -1.1
USP54-201ENST00000339859 TREML4Q6UXN2 200 aa8.15□□□□□ -1.1
USP54-201ENST00000339859 CACNA1HO95180 2353 aa8.15□□□□□ -1.1
USP54-201ENST00000339859 APOC4P55056 127 aa8.15□□□□□ -1.1
USP54-201ENST00000339859 NDUFA4L2Q9NRX3 87 aa8.15□□□□□ -1.1
USP54-201ENST00000339859 TMEM14BQ9NUH8 114 aa8.15□□□□□ -1.1
USP54-201ENST00000339859 ZFHX2Q9C0A1 2572 aaPredicted RBP8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms