RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 HIST1H2BMQ99879 126 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 APC2O95996 2303 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 TMEM155Q4W5P6 130 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 ZNF525Q8N782 197 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 A0A1B0GWJ7 208 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 SSC4DQ8WTU2 575 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 HEATR5BQ9P2D3 2071 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 TRGV1A0A0A0MS02 117 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 HIST1H4AP62805 103 aaKnown RBP10.49□□□□□ -0.73
SDC3-201ENST00000336798 SRSF6Q13247 344 aaKnown RBP10.49□□□□□ -0.73
SDC3-201ENST00000336798 ACTL10Q5JWF8 245 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 RCHY1Q96PM5 261 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 PSG8Q9UQ74 426 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 TMEM8BA6NDV4 472 aa10.48□□□□□ -0.73
SDC3-201ENST00000336798 DUSP14O95147 198 aaKnown RBP10.48□□□□□ -0.73
SDC3-201ENST00000336798 IGFL4Q6B9Z1 124 aa10.48□□□□□ -0.73
SDC3-201ENST00000336798 BOD1L2Q8IYS8 172 aa10.48□□□□□ -0.73
SDC3-201ENST00000336798 ASCL2Q99929 193 aa10.48□□□□□ -0.73
SDC3-201ENST00000336798 SLC25A2Q9BXI2 301 aa10.48□□□□□ -0.73
SDC3-201ENST00000336798 NCR2O95944 276 aa10.48□□□□□ -0.73
SDC3-201ENST00000336798 DMRTC2Q8IXT2 367 aaPredicted RBP10.48□□□□□ -0.73
SDC3-201ENST00000336798 LYZL4Q96KX0 146 aa10.48□□□□□ -0.73
SDC3-201ENST00000336798 JPT2Q9H910 190 aa10.48□□□□□ -0.73
SDC3-201ENST00000336798 EPDR1Q9UM22 224 aa10.48□□□□□ -0.73
SDC3-201ENST00000336798 C10orf55Q5SWW7 151 aa10.48□□□□□ -0.73
SDC3-201ENST00000336798 DTX2Q86UW9 622 aa10.48□□□□□ -0.73
SDC3-201ENST00000336798 C15orf61A6NNL5 157 aa10.47□□□□□ -0.73
SDC3-201ENST00000336798 J3QW42 95 aa10.47□□□□□ -0.73
SDC3-201ENST00000336798 SELLP14151 372 aa10.47□□□□□ -0.73
SDC3-201ENST00000336798 ATP5IP56385 69 aaPredicted RBP10.47□□□□□ -0.73
SDC3-201ENST00000336798 TRAV41A0A0B4J266 112 aa10.47□□□□□ -0.73
SDC3-201ENST00000336798 UCP1P25874 307 aa10.47□□□□□ -0.73
SDC3-201ENST00000336798 RPL23P62829 140 aaKnown RBP10.47□□□□□ -0.73
SDC3-201ENST00000336798 ZNF625Q96I27 306 aaPredicted RBP10.47□□□□□ -0.73
SDC3-201ENST00000336798 NAA38Q9BRA0 125 aaKnown RBP10.47□□□□□ -0.73
SDC3-201ENST00000336798 NRN1Q9NPD7 142 aa10.47□□□□□ -0.73
SDC3-201ENST00000336798 MTCL1Q9Y4B5 1905 aaKnown RBP10.47□□□□□ -0.73
SDC3-201ENST00000336798 INS-IGF2F8WCM5 200 aa10.47□□□□□ -0.73
SDC3-201ENST00000336798 INSP01308 110 aa10.47□□□□□ -0.73
SDC3-201ENST00000336798 ZNF329Q86UD4 541 aa10.47□□□□□ -0.73
SDC3-201ENST00000336798 WBP1Q96G27 269 aa10.47□□□□□ -0.73
SDC3-201ENST00000336798 COX11Q9Y6N1 276 aa10.47□□□□□ -0.73
SDC3-201ENST00000336798 FGFBP3Q8TAT2 258 aa10.47□□□□□ -0.73
SDC3-201ENST00000336798 SLC50A1Q9BRV3 221 aa10.47□□□□□ -0.73
SDC3-201ENST00000336798 ORAOV1Q8WV07 137 aa10.47□□□□□ -0.73
SDC3-201ENST00000336798 SLC25A28Q96A46 364 aa10.47□□□□□ -0.73
SDC3-201ENST00000336798 PRADC1Q9BSG0 188 aa10.47□□□□□ -0.73
SDC3-201ENST00000336798 SIPA1L3O60292 1781 aaPredicted RBP10.47□□□□□ -0.73
SDC3-201ENST00000336798 TRGV11A0A075B6L2 103 aa10.46□□□□□ -0.73
SDC3-201ENST00000336798 PAX4O43316 350 aa10.46□□□□□ -0.73
SDC3-201ENST00000336798 DPM2O94777 84 aa10.46□□□□□ -0.73
SDC3-201ENST00000336798 GAGE2BQ13066 116 aa10.46□□□□□ -0.73
SDC3-201ENST00000336798 GAGE2EQ4V326 116 aa10.46□□□□□ -0.73
SDC3-201ENST00000336798 C1orf122Q6ZSJ8 110 aa10.46□□□□□ -0.73
SDC3-201ENST00000336798 GAGE2DQ9UEU5 116 aa10.46□□□□□ -0.73
SDC3-201ENST00000336798 GGTLC3B5MD39 225 aa10.46□□□□□ -0.73
SDC3-201ENST00000336798 PYY3Q5JQD4 70 aa10.46□□□□□ -0.73
SDC3-201ENST00000336798 EXOC3-AS1Q8N2X6 119 aa10.46□□□□□ -0.73
SDC3-201ENST00000336798 CCL1P22362 96 aa10.46□□□□□ -0.73
SDC3-201ENST00000336798 CACNG8Q8WXS5 425 aa10.46□□□□□ -0.73
SDC3-201ENST00000336798 IGHV1-46P01743 117 aa10.46□□□□□ -0.74
SDC3-201ENST00000336798 OCIAD2Q56VL3 154 aa10.46□□□□□ -0.74
SDC3-201ENST00000336798 LAMTOR3Q9UHA4 124 aa10.46□□□□□ -0.74
SDC3-201ENST00000336798 SPINK8P0C7L1 97 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 TMEM249Q2WGJ8 235 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 PVRIGQ6DKI7 326 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 TMEM86BQ8N661 226 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 DLEC1Q9Y238 1755 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 C15orf32Q32M92 178 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 Q71RC1 249 aaPredicted RBP10.45□□□□□ -0.74
SDC3-201ENST00000336798 MAPK1IP1LQ8NDC0 245 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 FBLIM1Q8WUP2 373 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 C18orf12Q96KH6 178 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 VSIRQ9H7M9 311 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 SS18L2Q9UHA2 77 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 MYOFQ9NZM1 2061 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 KLF17Q5JT82 389 aaPredicted RBP10.45□□□□□ -0.74
SDC3-201ENST00000336798 ZNF497Q6ZNH5 498 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 TMEM144Q7Z5S9 345 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 CRIM1Q9NZV1 1036 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 ARHGEF17Q96PE2 2063 aaPredicted RBP10.45□□□□□ -0.74
SDC3-201ENST00000336798 COLCA2A8K830 154 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 FCN3O75636 299 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 IGKCP01834 107 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 A0A087WWC5 75 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 YPEL1O60688 119 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 TNFSF13O75888 250 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 PRTN3P24158 256 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 ZNF672Q499Z4 452 aaPredicted RBP10.45□□□□□ -0.74
SDC3-201ENST00000336798 Q6AWC8 147 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 LCNL1Q6ZST4 164 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 YPEL2Q96QA6 119 aa10.45□□□□□ -0.74
SDC3-201ENST00000336798 PMS2P5A8MQ11 134 aa10.44□□□□□ -0.74
SDC3-201ENST00000336798 M0R2P5 195 aa10.44□□□□□ -0.74
SDC3-201ENST00000336798 LY6HO94772 140 aa10.44□□□□□ -0.74
SDC3-201ENST00000336798 ZNF876PQ49A33 203 aa10.44□□□□□ -0.74
SDC3-201ENST00000336798 MRPL52Q86TS9 123 aaKnown RBP10.44□□□□□ -0.74
SDC3-201ENST00000336798 ATAD5Q96QE3 1844 aa10.44□□□□□ -0.74
SDC3-201ENST00000336798 ATP6V0BQ99437 205 aa10.44□□□□□ -0.74
SDC3-201ENST00000336798 AMBPP02760 352 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms