RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 USP9XQ93008 2570 aaPredicted RBP12.87□□□□□ -0.35
USH1C-202ENST00000318024 UTP20O75691 2785 aaKnown RBP12.87□□□□□ -0.35
USH1C-202ENST00000318024 TCF21O43680 179 aa12.86□□□□□ -0.35
USH1C-202ENST00000318024 AMY1AP04745 511 aa12.86□□□□□ -0.35
USH1C-202ENST00000318024 MAJINQ3KP22 176 aa12.86□□□□□ -0.35
USH1C-202ENST00000318024 C16orf54Q6UWD8 224 aa12.86□□□□□ -0.35
USH1C-202ENST00000318024 ORAOV1Q8WV07 137 aa12.86□□□□□ -0.35
USH1C-202ENST00000318024 TMEM14BQ9NUH8 114 aa12.86□□□□□ -0.35
USH1C-202ENST00000318024 CDC42EP3Q9UKI2 254 aa12.86□□□□□ -0.35
USH1C-202ENST00000318024 HLA-DQA1P01909 254 aa12.86□□□□□ -0.35
USH1C-202ENST00000318024 NPY1RP25929 384 aa12.86□□□□□ -0.35
USH1C-202ENST00000318024 SRIP30626 198 aa12.86□□□□□ -0.35
USH1C-202ENST00000318024 SLC24A4Q8NFF2 622 aa12.86□□□□□ -0.35
USH1C-202ENST00000318024 FOXA2Q9Y261 457 aaPredicted RBP12.86□□□□□ -0.35
USH1C-202ENST00000318024 RAI1Q7Z5J4 1906 aaPredicted RBP12.86□□□□□ -0.35
USH1C-202ENST00000318024 GGTLC3B5MD39 225 aa12.85□□□□□ -0.35
USH1C-202ENST00000318024 SPINK4O60575 86 aa12.85□□□□□ -0.35
USH1C-202ENST00000318024 FCN3O75636 299 aa12.85□□□□□ -0.35
USH1C-202ENST00000318024 CA2P00918 260 aa12.85□□□□□ -0.35
USH1C-202ENST00000318024 ERVK-16P61578 105 aa12.85□□□□□ -0.35
USH1C-202ENST00000318024 FXYD3Q14802 87 aa12.85□□□□□ -0.35
USH1C-202ENST00000318024 UTF1Q5T230 341 aa12.85□□□□□ -0.35
USH1C-202ENST00000318024 C19orf35Q6ZS72 473 aa12.85□□□□□ -0.35
USH1C-202ENST00000318024 TMEM167BQ9NRX6 74 aa12.85□□□□□ -0.35
USH1C-202ENST00000318024 F2RL2O00254 374 aa12.85□□□□□ -0.35
USH1C-202ENST00000318024 TOMM40O96008 361 aa12.85□□□□□ -0.35
USH1C-202ENST00000318024 PMCHP20382 165 aa12.85□□□□□ -0.35
USH1C-202ENST00000318024 PSG5Q15238 335 aa12.85□□□□□ -0.35
USH1C-202ENST00000318024 UBTD1Q9HAC8 227 aa12.85□□□□□ -0.35
USH1C-202ENST00000318024 MRPL27Q9P0M9 148 aaKnown RBP12.85□□□□□ -0.35
USH1C-202ENST00000318024 VPS13CQ709C8 3753 aa12.85□□□□□ -0.35
USH1C-202ENST00000318024 AKAP6Q13023 2319 aa12.85□□□□□ -0.35
USH1C-202ENST00000318024 IGKV1OR2-108A0A075B7D4 117 aa12.84□□□□□ -0.35
USH1C-202ENST00000318024 CCL25O15444 150 aa12.84□□□□□ -0.35
USH1C-202ENST00000318024 PPOXP50336 477 aa12.84□□□□□ -0.35
USH1C-202ENST00000318024 HSPE1P61604 102 aaKnown RBP12.84□□□□□ -0.35
USH1C-202ENST00000318024 SLC35B1P78383 322 aa12.84□□□□□ -0.35
USH1C-202ENST00000318024 RPL19P84098 196 aaKnown RBP12.84□□□□□ -0.35
USH1C-202ENST00000318024 LEAP2Q969E1 77 aa12.84□□□□□ -0.35
USH1C-202ENST00000318024 S1PR3Q99500 378 aa12.84□□□□□ -0.35
USH1C-202ENST00000318024 FAM234AQ9H0X4 552 aa12.84□□□□□ -0.35
USH1C-202ENST00000318024 MRPS16Q9Y3D3 137 aaKnown RBP12.84□□□□□ -0.35
USH1C-202ENST00000318024 TACC2O95359 2948 aa12.84□□□□□ -0.35
USH1C-202ENST00000318024 KIR2DS2P43631 304 aa12.84□□□□□ -0.35
USH1C-202ENST00000318024 Q6ZN92 141 aa12.84□□□□□ -0.35
USH1C-202ENST00000318024 PNKDQ8N490 385 aa12.84□□□□□ -0.35
USH1C-202ENST00000318024 ZNF439Q8NDP4 499 aa12.84□□□□□ -0.35
USH1C-202ENST00000318024 C18orf32Q8TCD1 76 aa12.84□□□□□ -0.35
USH1C-202ENST00000318024 WIPF2Q8TF74 440 aaPredicted RBP12.84□□□□□ -0.35
USH1C-202ENST00000318024 MBD6Q96DN6 1003 aa12.84□□□□□ -0.35
USH1C-202ENST00000318024 NABP2Q9BQ15 211 aa12.84□□□□□ -0.35
USH1C-202ENST00000318024 CLEC7AQ9BXN2 247 aa12.84□□□□□ -0.35
USH1C-202ENST00000318024 CRYBG3Q68DQ2 2970 aa12.83□□□□□ -0.36
USH1C-202ENST00000318024 NKX6-3A6NJ46 265 aa12.83□□□□□ -0.36
USH1C-202ENST00000318024 HNRNPA3P51991 378 aaKnown RBP12.83□□□□□ -0.36
USH1C-202ENST00000318024 SLAQ13239 276 aa12.83□□□□□ -0.36
USH1C-202ENST00000318024 RAB31Q13636 194 aa12.83□□□□□ -0.36
USH1C-202ENST00000318024 FAM19A2Q8N3H0 131 aa12.83□□□□□ -0.36
USH1C-202ENST00000318024 WNT10AQ9GZT5 417 aa12.83□□□□□ -0.36
USH1C-202ENST00000318024 CALYQ9NYX4 217 aa12.83□□□□□ -0.36
USH1C-202ENST00000318024 GNG12Q9UBI6 72 aa12.83□□□□□ -0.36
USH1C-202ENST00000318024 IZUMO1RA6ND01 250 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 ACTL6BO94805 426 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 CGB3P0DN86 165 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 CGB7P0DN87 165 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 TSPOP30536 169 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 TCL1AP56279 114 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 RBX1P62877 108 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 C17orf58Q2M2W7 97 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 TIGITQ495A1 244 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 C11orf71Q6IPW1 123 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 MRPL54Q6P161 138 aaKnown RBP12.82□□□□□ -0.36
USH1C-202ENST00000318024 TXN2Q99757 166 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 RAB1BQ9H0U4 201 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 CTSZQ9UBR2 303 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 IGHV2-26A0A0B4J1V2 119 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 ITGB1BP1O14713 200 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 POU2AF1Q16633 256 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 IBA57Q5T440 356 aaKnown RBP12.82□□□□□ -0.36
USH1C-202ENST00000318024 OR4A47Q6IF82 309 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 OR4S2Q8NH73 311 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 H1FXQ92522 213 aaKnown RBP12.82□□□□□ -0.36
USH1C-202ENST00000318024 TECRQ9NZ01 308 aaKnown RBP12.82□□□□□ -0.36
USH1C-202ENST00000318024 IDI2-AS1Q9NZ38 188 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 SVEP1Q4LDE5 3571 aa12.82□□□□□ -0.36
USH1C-202ENST00000318024 A0A1W2PRE2 83 aa12.81□□□□□ -0.36
USH1C-202ENST00000318024 TNFRSF13BO14836 293 aaPredicted RBP12.81□□□□□ -0.36
USH1C-202ENST00000318024 NDUFS7O75251 213 aa12.81□□□□□ -0.36
USH1C-202ENST00000318024 MYOD1P15172 320 aa12.81□□□□□ -0.36
USH1C-202ENST00000318024 GDF5OSQ5U4N7 250 aa12.81□□□□□ -0.36
USH1C-202ENST00000318024 KLHDC1Q8N7A1 406 aa12.81□□□□□ -0.36
USH1C-202ENST00000318024 FAM168AQ92567 244 aa12.81□□□□□ -0.36
USH1C-202ENST00000318024 CORO2AQ92828 525 aa12.81□□□□□ -0.36
USH1C-202ENST00000318024 DSCAML1Q8TD84 2053 aa12.81□□□□□ -0.36
USH1C-202ENST00000318024 DOPEY1Q5JWR5 2465 aa12.81□□□□□ -0.36
USH1C-202ENST00000318024 APCSP02743 223 aa12.81□□□□□ -0.36
USH1C-202ENST00000318024 RASL11AQ6T310 242 aa12.81□□□□□ -0.36
USH1C-202ENST00000318024 MOB3BQ86TA1 216 aa12.81□□□□□ -0.36
USH1C-202ENST00000318024 OR4F17Q8NGA8 305 aa12.81□□□□□ -0.36
USH1C-202ENST00000318024 RNASE8Q8TDE3 154 aaKnown RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms