RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 H7C1H1 209 aa6.84□□□□□ -1.32
VPS41-202ENST00000310301 CHTOPQ9Y3Y2 248 aaKnown RBP6.84□□□□□ -1.32
VPS41-202ENST00000310301 PLXNA3P51805 1871 aa6.84□□□□□ -1.32
VPS41-202ENST00000310301 IGKV3D-20A0A0C4DH25 116 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 SAA1P0DJI8 122 aaPredicted RBP6.83□□□□□ -1.32
VPS41-202ENST00000310301 TMEM249Q2WGJ8 235 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 ZNF664Q8N3J9 261 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 COL6A6A6NMZ7 2263 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 A0A087X0K7 114 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 GAGE12BA1L429 117 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 NPIPB11E5RHQ5 1161 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 SPINK8P0C7L1 97 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 BSPH1Q075Z2 132 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 DUX5Q96PT3 197 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 NUP210Q8TEM1 1887 aaPredicted RBP6.83□□□□□ -1.32
VPS41-202ENST00000310301 A0A1W2PRE2 83 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 PCNX2A6NKB5 2137 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 FAM106AQ4KMX7 169 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 DNM1P46Q6ZS02 220 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 KIR3DL3Q8N743 410 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 C4orf51C9J302 202 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 EREGO14944 169 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 NAPSAO96009 420 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 FOXL1Q12952 345 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 MPV17L2Q567V2 206 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 C1orf122Q6ZSJ8 110 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 OR9G4Q8NGQ1 327 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 OR5P3Q8WZ94 311 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 EEF1AKMT3Q96AZ1 226 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 EPDR1Q9UM22 224 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 S4R3C0 116 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 hDV102S1A0JD36 115 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 SRSF1Q07955 248 aaKnown RBP eCLIP6.83□□□□□ -1.32
VPS41-202ENST00000310301 ATXN8Q156A1 80 aa6.83□□□□□ -1.32
VPS41-202ENST00000310301 NRN1LQ496H8 165 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 ZNF562Q6V9R5 426 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 ASCL4Q6XD76 172 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 BCL6BQ8N143 479 aaPredicted RBP6.82□□□□□ -1.32
VPS41-202ENST00000310301 KLF14Q8TD94 323 aaPredicted RBP6.82□□□□□ -1.32
VPS41-202ENST00000310301 IFI27L1Q96BM0 104 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 ERG28Q9UKR5 140 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 TNFRSF6BO95407 300 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 EVI2AP22794 236 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 LHX2P50458 406 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 FAM166AQ6J272 317 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 TEX38Q6PEX7 206 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 VSIRQ9H7M9 311 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 FOXA2Q9Y261 457 aaPredicted RBP6.82□□□□□ -1.32
VPS41-202ENST00000310301 IGLV3-32A0A0A0MS00 114 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 IGHV3-49A0A0A0MS15 119 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 MBD3L4A6NDZ8 208 aaPredicted RBP6.82□□□□□ -1.32
VPS41-202ENST00000310301 MBD3L3A6NE82 208 aaPredicted RBP6.82□□□□□ -1.32
VPS41-202ENST00000310301 MBD3L5A6NJ08 208 aaPredicted RBP6.82□□□□□ -1.32
VPS41-202ENST00000310301 CD55P08174 381 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 HIST1H4AP62805 103 aaKnown RBP6.82□□□□□ -1.32
VPS41-202ENST00000310301 FAM71F2Q6NXP2 309 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 MRPL52Q86TS9 123 aaKnown RBP6.82□□□□□ -1.32
VPS41-202ENST00000310301 DMRTC2Q8IXT2 367 aaPredicted RBP6.82□□□□□ -1.32
VPS41-202ENST00000310301 TMEM256Q8N2U0 113 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 OR9G1Q8NH87 305 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 MBD3L2Q8NHZ7 208 aaPredicted RBP6.82□□□□□ -1.32
VPS41-202ENST00000310301 PLPPR1Q8TBJ4 325 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 RSPO3Q9BXY4 272 aaPredicted RBP6.82□□□□□ -1.32
VPS41-202ENST00000310301 EFNA4P52798 201 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 EGR4Q05215 589 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 ACTL10Q5JWF8 245 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 GTSCR1Q86UQ5 136 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 RNF182Q8N6D2 247 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 DEPPQ9NTK1 212 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 RNASE4P34096 147 aaKnown RBP6.82□□□□□ -1.32
VPS41-202ENST00000310301 SNRPD3P62318 126 aaKnown RBP6.82□□□□□ -1.32
VPS41-202ENST00000310301 TMEM54Q969K7 222 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 SRXN1Q9BYN0 137 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 OTORQ9NRC9 128 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 PLSCR4Q9NRQ2 329 aa6.82□□□□□ -1.32
VPS41-202ENST00000310301 GUSBP1Q15486 140 aa6.81□□□□□ -1.32
VPS41-202ENST00000310301 KIAA1671Q9BY89 1806 aa6.81□□□□□ -1.32
VPS41-202ENST00000310301 C12orf77C9JDV5 145 aa6.81□□□□□ -1.32
VPS41-202ENST00000310301 PPIAL4CA0A0B4J2A2 164 aa6.81□□□□□ -1.32
VPS41-202ENST00000310301 PRB1P04280 392 aa6.81□□□□□ -1.32
VPS41-202ENST00000310301 PPIAL4GP0DN37 164 aa6.81□□□□□ -1.32
VPS41-202ENST00000310301 NXT2Q9NPJ8 142 aaKnown RBP6.81□□□□□ -1.32
VPS41-202ENST00000310301 SCN8AQ9UQD0 1980 aa6.81□□□□□ -1.32
VPS41-202ENST00000310301 LOC105371242A0A075B767 164 aa6.81□□□□□ -1.32
VPS41-202ENST00000310301 A0A0G2JMM0 328 aa6.81□□□□□ -1.32
VPS41-202ENST00000310301 A0A1W2PPB8 328 aa6.81□□□□□ -1.32
VPS41-202ENST00000310301 KIR3DP1A8MWS1 328 aa6.81□□□□□ -1.32
VPS41-202ENST00000310301 ADAMTSL5Q6ZMM2 481 aa6.81□□□□□ -1.32
VPS41-202ENST00000310301 COX11Q9Y6N1 276 aa6.81□□□□□ -1.32
VPS41-202ENST00000310301 M0R2P5 195 aa6.8□□□□□ -1.32
VPS41-202ENST00000310301 MPZP25189 248 aa6.8□□□□□ -1.32
VPS41-202ENST00000310301 ESPL1Q14674 2120 aa6.8□□□□□ -1.32
VPS41-202ENST00000310301 KIR3DS1Q14943 382 aa6.8□□□□□ -1.32
VPS41-202ENST00000310301 LCN12Q6JVE5 192 aa6.8□□□□□ -1.32
VPS41-202ENST00000310301 NPIPB13A6NJU9 1138 aa6.8□□□□□ -1.32
VPS41-202ENST00000310301 PLNP26678 52 aa6.8□□□□□ -1.32
VPS41-202ENST00000310301 TMEM30BQ3MIR4 351 aa6.8□□□□□ -1.32
VPS41-202ENST00000310301 ZNRF1Q8ND25 227 aa6.8□□□□□ -1.32
VPS41-202ENST00000310301 SPRR3Q9UBC9 169 aa6.8□□□□□ -1.32
VPS41-202ENST00000310301 IGHV3-64A0A075B6Q5 118 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 329.3 ms