RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 CD74P04233 296 aa10.59□□□□□ -0.71
CCDC88B-201ENST00000301897 ETV6P41212 452 aa10.59□□□□□ -0.71
CCDC88B-201ENST00000301897 HTR2BP41595 481 aa10.59□□□□□ -0.71
CCDC88B-201ENST00000301897 PIGPP57054 158 aa10.59□□□□□ -0.71
CCDC88B-201ENST00000301897 ZNF767PQ75MW2 155 aa10.59□□□□□ -0.71
CCDC88B-201ENST00000301897 YIPF6Q96EC8 236 aa10.59□□□□□ -0.71
CCDC88B-201ENST00000301897 MRPL36Q9P0J6 103 aaKnown RBP10.59□□□□□ -0.71
CCDC88B-201ENST00000301897 DNAH11Q96DT5 4516 aa10.59□□□□□ -0.71
CCDC88B-201ENST00000301897 C3orf85A0A1B0GTC6 90 aa10.58□□□□□ -0.72
CCDC88B-201ENST00000301897 HLA-DRB4P13762 266 aa10.58□□□□□ -0.72
CCDC88B-201ENST00000301897 OR10J1P30954 320 aa10.58□□□□□ -0.72
CCDC88B-201ENST00000301897 NUP62P37198 522 aaPredicted RBP10.58□□□□□ -0.72
CCDC88B-201ENST00000301897 SPCS3P61009 180 aa10.58□□□□□ -0.72
CCDC88B-201ENST00000301897 TRIM16LQ309B1 348 aa10.58□□□□□ -0.72
CCDC88B-201ENST00000301897 RNF212Q495C1 297 aa10.58□□□□□ -0.72
CCDC88B-201ENST00000301897 ZNF705AQ6ZN79 300 aaPredicted RBP10.58□□□□□ -0.72
CCDC88B-201ENST00000301897 SNX29P2Q8IUI4 249 aa10.58□□□□□ -0.72
CCDC88B-201ENST00000301897 FAM219AQ8IW50 185 aa10.58□□□□□ -0.72
CCDC88B-201ENST00000301897 CCDC71LQ8N9Z2 235 aa10.58□□□□□ -0.72
CCDC88B-201ENST00000301897 RNASE11Q8TAA1 199 aaKnown RBP10.58□□□□□ -0.72
CCDC88B-201ENST00000301897 RNASEH2CQ8TDP1 164 aaKnown RBP10.58□□□□□ -0.72
CCDC88B-201ENST00000301897 TP53RKQ96S44 253 aa10.58□□□□□ -0.72
CCDC88B-201ENST00000301897 PFDN2Q9UHV9 154 aa10.58□□□□□ -0.72
CCDC88B-201ENST00000301897 HLA-DRB4X5D2U9 266 aa10.58□□□□□ -0.72
CCDC88B-201ENST00000301897 ZNF705FA8MVS1 300 aaPredicted RBP10.57□□□□□ -0.72
CCDC88B-201ENST00000301897 IGLC1P0CG04 106 aa10.57□□□□□ -0.72
CCDC88B-201ENST00000301897 ZNF705DP0CH99 300 aaPredicted RBP10.57□□□□□ -0.72
CCDC88B-201ENST00000301897 ZNF705BP0CI00 300 aaPredicted RBP10.57□□□□□ -0.72
CCDC88B-201ENST00000301897 TBPP20226 339 aa10.57□□□□□ -0.72
CCDC88B-201ENST00000301897 NKX2-1P43699 371 aaPredicted RBP10.57□□□□□ -0.72
CCDC88B-201ENST00000301897 LSM3P62310 102 aaKnown RBP10.57□□□□□ -0.72
CCDC88B-201ENST00000301897 MLANAQ16655 118 aa10.57□□□□□ -0.72
CCDC88B-201ENST00000301897 ETFRF1Q6IPR1 90 aa10.57□□□□□ -0.72
CCDC88B-201ENST00000301897 Q6ZR54 194 aa10.57□□□□□ -0.72
CCDC88B-201ENST00000301897 ARRDC1Q8N5I2 433 aa10.57□□□□□ -0.72
CCDC88B-201ENST00000301897 OR52E5Q8NH55 327 aa10.57□□□□□ -0.72
CCDC88B-201ENST00000301897 ZFAND1Q8TCF1 268 aa10.57□□□□□ -0.72
CCDC88B-201ENST00000301897 COPZ2Q9P299 210 aa10.57□□□□□ -0.72
CCDC88B-201ENST00000301897 COMMD3Q9UBI1 195 aa10.57□□□□□ -0.72
CCDC88B-201ENST00000301897 RFNGQ9Y644 331 aa10.57□□□□□ -0.72
CCDC88B-201ENST00000301897 M0QYG6 137 aa10.56□□□□□ -0.72
CCDC88B-201ENST00000301897 RND2P52198 227 aa10.56□□□□□ -0.72
CCDC88B-201ENST00000301897 DHODHQ02127 395 aa10.56□□□□□ -0.72
CCDC88B-201ENST00000301897 AARDQ4LEZ3 155 aa10.56□□□□□ -0.72
CCDC88B-201ENST00000301897 C2orf83Q53S99 150 aa10.56□□□□□ -0.72
CCDC88B-201ENST00000301897 RNASE10Q5GAN6 216 aaKnown RBP10.56□□□□□ -0.72
CCDC88B-201ENST00000301897 PRSS54Q6PEW0 395 aa10.56□□□□□ -0.72
CCDC88B-201ENST00000301897 SIGLEC15Q6ZMC9 328 aa10.56□□□□□ -0.72
CCDC88B-201ENST00000301897 NOXA1Q86UR1 476 aa10.56□□□□□ -0.72
CCDC88B-201ENST00000301897 LHFPL1Q86WI0 220 aa10.56□□□□□ -0.72
CCDC88B-201ENST00000301897 HEYLQ9NQ87 328 aaPredicted RBP10.56□□□□□ -0.72
CCDC88B-201ENST00000301897 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.56□□□□□ -0.72
CCDC88B-201ENST00000301897 CACFD1Q9UGQ2 172 aa10.56□□□□□ -0.72
CCDC88B-201ENST00000301897 IL4P05112 153 aa10.55□□□□□ -0.72
CCDC88B-201ENST00000301897 PI3P19957 117 aa10.55□□□□□ -0.72
CCDC88B-201ENST00000301897 UCP1P25874 307 aa10.55□□□□□ -0.72
CCDC88B-201ENST00000301897 FAM3BP58499 235 aaPredicted RBP10.55□□□□□ -0.72
CCDC88B-201ENST00000301897 OXA1LQ15070 435 aa10.55□□□□□ -0.72
CCDC88B-201ENST00000301897 C1orf134Q5TEV5 83 aa10.55□□□□□ -0.72
CCDC88B-201ENST00000301897 Q6ZRM9 215 aa10.55□□□□□ -0.72
CCDC88B-201ENST00000301897 CLUHP3Q96NS8 147 aa10.55□□□□□ -0.72
CCDC88B-201ENST00000301897 NIPSNAP3BQ9BS92 247 aa10.55□□□□□ -0.72
CCDC88B-201ENST00000301897 VCX3AQ9NNX9 186 aa10.55□□□□□ -0.72
CCDC88B-201ENST00000301897 ABCA13Q86UQ4 5058 aa10.54□□□□□ -0.72
CCDC88B-201ENST00000301897 IGLV2-18A0A075B6J9 118 aa10.54□□□□□ -0.72
CCDC88B-201ENST00000301897 A0A087WXM4 84 aa10.54□□□□□ -0.72
CCDC88B-201ENST00000301897 BUB3O43684 328 aa10.54□□□□□ -0.72
CCDC88B-201ENST00000301897 TNFAIP8O95379 198 aa10.54□□□□□ -0.72
CCDC88B-201ENST00000301897 RD3LP0DJH9 198 aa10.54□□□□□ -0.72
CCDC88B-201ENST00000301897 ELK1P19419 428 aa10.54□□□□□ -0.72
CCDC88B-201ENST00000301897 ID1P41134 155 aa10.54□□□□□ -0.72
CCDC88B-201ENST00000301897 EMP1P54849 157 aa10.54□□□□□ -0.72
CCDC88B-201ENST00000301897 SPATA31B1PQ5VZV4 182 aa10.54□□□□□ -0.72
CCDC88B-201ENST00000301897 SCRT1Q9BWW7 348 aa10.54□□□□□ -0.72
CCDC88B-201ENST00000301897 DKK2Q9UBU2 259 aa10.54□□□□□ -0.72
CCDC88B-201ENST00000301897 DYNC1H1Q14204 4646 aaKnown RBP10.53□□□□□ -0.72
CCDC88B-201ENST00000301897 A0A0G2JRQ6 117 aa10.53□□□□□ -0.72
CCDC88B-201ENST00000301897 TOMM40O96008 361 aa10.53□□□□□ -0.72
CCDC88B-201ENST00000301897 USF2Q15853 346 aaPredicted RBP10.53□□□□□ -0.72
CCDC88B-201ENST00000301897 FOXI2Q6ZQN5 318 aa10.53□□□□□ -0.72
CCDC88B-201ENST00000301897 SLC24A4Q8NFF2 622 aa10.53□□□□□ -0.72
CCDC88B-201ENST00000301897 TERB2Q8NHR7 220 aa10.53□□□□□ -0.72
CCDC88B-201ENST00000301897 ABHD1Q96SE0 405 aa10.53□□□□□ -0.72
CCDC88B-201ENST00000301897 TMEM222Q9H0R3 208 aa10.53□□□□□ -0.72
CCDC88B-201ENST00000301897 KLK11Q9UBX7 282 aa10.53□□□□□ -0.72
CCDC88B-201ENST00000301897 IGHV3OR16-12A0A075B7B8 117 aa10.52□□□□□ -0.73
CCDC88B-201ENST00000301897 HPGDSO60760 199 aa10.52□□□□□ -0.73
CCDC88B-201ENST00000301897 CDS2O95674 445 aa10.52□□□□□ -0.73
CCDC88B-201ENST00000301897 CD3DP04234 171 aa10.52□□□□□ -0.73
CCDC88B-201ENST00000301897 SP6Q3SY56 376 aa10.52□□□□□ -0.73
CCDC88B-201ENST00000301897 FAM222AQ5U5X8 452 aa10.52□□□□□ -0.73
CCDC88B-201ENST00000301897 OR8G2PQ6IF36 304 aa10.52□□□□□ -0.73
CCDC88B-201ENST00000301897 ZNF575Q86XF7 245 aa10.52□□□□□ -0.73
CCDC88B-201ENST00000301897 NPIPB3Q92617 1050 aa10.52□□□□□ -0.73
CCDC88B-201ENST00000301897 RBPMSQ93062 196 aaKnown RBP10.52□□□□□ -0.73
CCDC88B-201ENST00000301897 SAV1Q9H4B6 383 aaPredicted RBP10.52□□□□□ -0.73
CCDC88B-201ENST00000301897 GOLT1BQ9Y3E0 138 aa10.52□□□□□ -0.73
CCDC88B-201ENST00000301897 NACAE9PAV3 2078 aa10.51□□□□□ -0.73
CCDC88B-201ENST00000301897 CEBPZOSA8MTT3 80 aa10.51□□□□□ -0.73
CCDC88B-201ENST00000301897 HBE1P02100 147 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms