RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 AREGP15514 252 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 KIR2DS2P43631 304 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 GPR6P46095 362 aaPredicted RBP8.16□□□□□ -1.1
LIG3-201ENST00000262327 DLX1P56177 255 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 ERASQ7Z444 233 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 Q8NA96 180 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 GAFA1Q96PS6 74 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 MRPL20Q9BYC9 149 aaKnown RBP8.16□□□□□ -1.1
LIG3-201ENST00000262327 IGLV2-8P01709 118 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 UBE2L3P68036 154 aaKnown RBP8.16□□□□□ -1.1
LIG3-201ENST00000262327 PAFAH1B2P68402 229 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 MZT1Q08AG7 82 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 LCN12Q6JVE5 192 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 TMEM136Q6ZRR5 245 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 FAM57AQ8TBR7 257 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 SMIM12Q96EX1 92 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 NRN1Q9NPD7 142 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 ZNF355PQ9NSJ1 428 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 RNF7Q9UBF6 113 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 ZGRF1Q86YA3 2104 aa8.15□□□□□ -1.1
LIG3-201ENST00000262327 SVEP1Q4LDE5 3571 aa8.15□□□□□ -1.1
LIG3-201ENST00000262327 C22orf46C9J442 243 aa8.15□□□□□ -1.1
LIG3-201ENST00000262327 GOSR1O95249 250 aa8.15□□□□□ -1.1
LIG3-201ENST00000262327 GPX1P07203 203 aa8.15□□□□□ -1.1
LIG3-201ENST00000262327 CD24P25063 80 aa8.15□□□□□ -1.1
LIG3-201ENST00000262327 HINT1P49773 126 aaPredicted RBP8.15□□□□□ -1.1
LIG3-201ENST00000262327 GNG5P63218 68 aa8.15□□□□□ -1.1
LIG3-201ENST00000262327 PRCDQ00LT1 54 aa8.15□□□□□ -1.1
LIG3-201ENST00000262327 CR1LQ2VPA4 569 aa8.15□□□□□ -1.1
LIG3-201ENST00000262327 HARBI1Q96MB7 349 aa8.15□□□□□ -1.1
LIG3-201ENST00000262327 SSBP4Q9BWG4 385 aaPredicted RBP8.15□□□□□ -1.1
LIG3-201ENST00000262327 ANKRD11Q6UB99 2663 aaPredicted RBP8.15□□□□□ -1.1
LIG3-201ENST00000262327 RAI1Q7Z5J4 1906 aaPredicted RBP8.15□□□□□ -1.11
LIG3-201ENST00000262327 A0A1W2PS18 150 aa8.15□□□□□ -1.11
LIG3-201ENST00000262327 BMPR1BO00238 502 aa8.15□□□□□ -1.11
LIG3-201ENST00000262327 ZZEF1O43149 2961 aa8.15□□□□□ -1.11
LIG3-201ENST00000262327 IGHV1-46P01743 117 aa8.15□□□□□ -1.11
LIG3-201ENST00000262327 FAM87AP0C7U9 286 aa8.15□□□□□ -1.11
LIG3-201ENST00000262327 RNASE2P10153 161 aaKnown RBP8.15□□□□□ -1.11
LIG3-201ENST00000262327 CX3CL1P78423 397 aa8.15□□□□□ -1.11
LIG3-201ENST00000262327 SLAQ13239 276 aa8.15□□□□□ -1.11
LIG3-201ENST00000262327 VAMP3Q15836 100 aa8.15□□□□□ -1.11
LIG3-201ENST00000262327 RUSC1-AS1Q66K80 236 aa8.15□□□□□ -1.11
LIG3-201ENST00000262327 ZNF439Q8NDP4 499 aa8.15□□□□□ -1.11
LIG3-201ENST00000262327 TMEM167BQ9NRX6 74 aa8.15□□□□□ -1.11
LIG3-201ENST00000262327 CDC42EP3Q9UKI2 254 aa8.15□□□□□ -1.11
LIG3-201ENST00000262327 PRNDQ9UKY0 176 aa8.15□□□□□ -1.11
LIG3-201ENST00000262327 NBASA2RRP1 2371 aa8.15□□□□□ -1.11
LIG3-201ENST00000262327 DYSFO75923 2080 aa8.15□□□□□ -1.11
LIG3-201ENST00000262327 IGHV3-72A0A0B4J1Y9 119 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 CORTO00230 105 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 CAMPP49913 170 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 BLNKQ8WV28 456 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 TXN2Q99757 166 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 SLC25A33Q9BSK2 321 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 SFXN3Q9BWM7 321 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 MRPL36Q9P0J6 103 aaKnown RBP8.14□□□□□ -1.11
LIG3-201ENST00000262327 APC2O95996 2303 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 TRAV30A0A087WSZ9 112 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 PSG1P11464 419 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 GLRXP35754 106 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 RTL8BQ17RB0 113 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 Q6ZN92 141 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 H1FXQ92522 213 aaKnown RBP8.14□□□□□ -1.11
LIG3-201ENST00000262327 NPIPB3Q92617 1050 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 GNB1LQ9BYB4 327 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 COMMD5Q9GZQ3 224 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 ZNF586Q9NXT0 402 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 C8orf88P0DMB2 117 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 USF1P22415 310 aaPredicted RBP8.14□□□□□ -1.11
LIG3-201ENST00000262327 APOBEC3AP31941 199 aaPredicted RBP8.14□□□□□ -1.11
LIG3-201ENST00000262327 TMEM95Q3KNT9 176 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 SPATA45Q537H7 98 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 STUMQ69YW2 141 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 Q8N976 141 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 SLC25A2Q9BXI2 301 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 MEGF9Q9H1U4 602 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 PRORYQ9H606 182 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 FNDC4Q9H6D8 234 aaPredicted RBP8.14□□□□□ -1.11
LIG3-201ENST00000262327 CLEC5AQ9NY25 188 aa8.14□□□□□ -1.11
LIG3-201ENST00000262327 MOSP00540 346 aa8.13□□□□□ -1.11
LIG3-201ENST00000262327 HNRNPA3P51991 378 aaKnown RBP8.13□□□□□ -1.11
LIG3-201ENST00000262327 MFAP2P55001 183 aa8.13□□□□□ -1.11
LIG3-201ENST00000262327 Q0VG73 95 aa8.13□□□□□ -1.11
LIG3-201ENST00000262327 PRSS57Q6UWY2 283 aa8.13□□□□□ -1.11
LIG3-201ENST00000262327 TPSG1Q9NRR2 321 aa8.13□□□□□ -1.11
LIG3-201ENST00000262327 BSNQ9UPA5 3926 aa8.13□□□□□ -1.11
LIG3-201ENST00000262327 TOX4O94842 621 aa8.13□□□□□ -1.11
LIG3-201ENST00000262327 CFHR2P36980 270 aa8.13□□□□□ -1.11
LIG3-201ENST00000262327 CD69Q07108 199 aa8.13□□□□□ -1.11
LIG3-201ENST00000262327 KLRB1Q12918 225 aa8.13□□□□□ -1.11
LIG3-201ENST00000262327 HCP5Q6MZN7 132 aa8.13□□□□□ -1.11
LIG3-201ENST00000262327 RITA1Q96K30 269 aa8.13□□□□□ -1.11
LIG3-201ENST00000262327 FAM167A-AS1Q96KT0 104 aa8.13□□□□□ -1.11
LIG3-201ENST00000262327 SLC25A10Q9UBX3 287 aaPredicted RBP8.13□□□□□ -1.11
LIG3-201ENST00000262327 RPUSD1Q9UJJ7 312 aaKnown RBP8.13□□□□□ -1.11
LIG3-201ENST00000262327 ZNF835Q9Y2P0 537 aa8.13□□□□□ -1.11
LIG3-201ENST00000262327 FAM215AQ9Y5M1 114 aa8.13□□□□□ -1.11
LIG3-201ENST00000262327 ISLRO14498 428 aa8.12□□□□□ -1.11
LIG3-201ENST00000262327 PRRG2O14669 202 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms