RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 IFITM10A6NMD0 228 aa10.24□□□□□ -0.77
HIF3A-201ENST00000244302 ZNF726P1Q15940 193 aa10.24□□□□□ -0.77
HIF3A-201ENST00000244302 OR1L8Q8NGR8 309 aa10.24□□□□□ -0.77
HIF3A-201ENST00000244302 VSTM2AQ8TAG5 236 aa10.24□□□□□ -0.77
HIF3A-201ENST00000244302 DUX5Q96PT3 197 aa10.24□□□□□ -0.77
HIF3A-201ENST00000244302 PLEKHA3Q9HB20 300 aa10.24□□□□□ -0.77
HIF3A-201ENST00000244302 URGCP-MRPS24S4R325 110 aa10.24□□□□□ -0.77
HIF3A-201ENST00000244302 MAP1LC3B2A6NCE7 125 aa10.23□□□□□ -0.77
HIF3A-201ENST00000244302 TEX22C9J3V5 150 aa10.23□□□□□ -0.77
HIF3A-201ENST00000244302 FSHBP01225 129 aa10.23□□□□□ -0.77
HIF3A-201ENST00000244302 IGHV4-59P01825 116 aa10.23□□□□□ -0.77
HIF3A-201ENST00000244302 MBP02144 154 aa10.23□□□□□ -0.77
HIF3A-201ENST00000244302 AMY1AP04745 511 aa10.23□□□□□ -0.77
HIF3A-201ENST00000244302 COMPP49747 757 aaPredicted RBP10.23□□□□□ -0.77
HIF3A-201ENST00000244302 MFAP2P55001 183 aa10.23□□□□□ -0.77
HIF3A-201ENST00000244302 CX3CL1P78423 397 aa10.23□□□□□ -0.77
HIF3A-201ENST00000244302 PYY3Q5JQD4 70 aa10.23□□□□□ -0.77
HIF3A-201ENST00000244302 Q71RC1 249 aaPredicted RBP10.23□□□□□ -0.77
HIF3A-201ENST00000244302 HIST3H2BBQ8N257 126 aa10.23□□□□□ -0.77
HIF3A-201ENST00000244302 MAP1LC3BQ9GZQ8 125 aa10.23□□□□□ -0.77
HIF3A-201ENST00000244302 VSIRQ9H7M9 311 aa10.23□□□□□ -0.77
HIF3A-201ENST00000244302 NAT8Q9UHE5 227 aa10.23□□□□□ -0.77
HIF3A-201ENST00000244302 ZNF257Q9Y2Q1 563 aa10.23□□□□□ -0.77
HIF3A-201ENST00000244302 IGHV3-21A0A0B4J1V1 117 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 IGLC7A0M8Q6 106 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 CNIH1O95406 144 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 TRGC2P03986 189 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 BRS3P32247 399 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 SLC38A11Q08AI6 406 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 LCN15Q6UWW0 184 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 MMD2Q8IY49 270 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 OR5B3Q8NH48 314 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 OR4A5Q8NH83 315 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 SSMEM1Q8WWF3 244 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 SRSF12Q8WXF0 261 aaKnown RBP10.22□□□□□ -0.77
HIF3A-201ENST00000244302 LINC00527Q9UJ94 153 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 TMEM250H0YL14 139 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 J3QLI3 93 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 ACTL6BO94805 426 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 RPL27AP46776 148 aaKnown RBP10.22□□□□□ -0.77
HIF3A-201ENST00000244302 FXYD3Q14802 87 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 CYP2G1PQ6ZSU1 146 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 PFDN5Q99471 154 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 RNF5Q99942 180 aa10.22□□□□□ -0.77
HIF3A-201ENST00000244302 IGHV7-81A0A0B4J1V7 117 aa10.21□□□□□ -0.77
HIF3A-201ENST00000244302 UBE2L5PA0A1B0GUS4 154 aa10.21□□□□□ -0.77
HIF3A-201ENST00000244302 PRSS46E5RG02 174 aa10.21□□□□□ -0.77
HIF3A-201ENST00000244302 RNASE2P10153 161 aaKnown RBP10.21□□□□□ -0.77
HIF3A-201ENST00000244302 EGR2P11161 476 aaPredicted RBP10.21□□□□□ -0.77
HIF3A-201ENST00000244302 BLCAPP62952 87 aa10.21□□□□□ -0.77
HIF3A-201ENST00000244302 ASPHD1Q5U4P2 390 aa10.21□□□□□ -0.77
HIF3A-201ENST00000244302 SPNS3Q6ZMD2 512 aa10.21□□□□□ -0.77
HIF3A-201ENST00000244302 SLC24A4Q8NFF2 622 aa10.21□□□□□ -0.77
HIF3A-201ENST00000244302 TMEM147Q9BVK8 224 aa10.21□□□□□ -0.77
HIF3A-201ENST00000244302 ENY2Q9NPA8 101 aa10.21□□□□□ -0.77
HIF3A-201ENST00000244302 MANBALQ9NQG1 85 aa10.21□□□□□ -0.77
HIF3A-201ENST00000244302 SLC39A9Q9NUM3 307 aa10.21□□□□□ -0.77
HIF3A-201ENST00000244302 FKBP11Q9NYL4 201 aa10.21□□□□□ -0.77
HIF3A-201ENST00000244302 SETD2Q9BYW2 2564 aaPredicted RBP10.21□□□□□ -0.78
HIF3A-201ENST00000244302 TRGC1P0CF51 173 aa10.21□□□□□ -0.78
HIF3A-201ENST00000244302 NPY1RP25929 384 aa10.21□□□□□ -0.78
HIF3A-201ENST00000244302 LINC00469Q8N7U9 141 aa10.21□□□□□ -0.78
HIF3A-201ENST00000244302 SLC25A33Q9BSK2 321 aa10.21□□□□□ -0.78
HIF3A-201ENST00000244302 MRPL36Q9P0J6 103 aaKnown RBP10.21□□□□□ -0.78
HIF3A-201ENST00000244302 PITPNC1Q9UKF7 332 aa10.21□□□□□ -0.78
HIF3A-201ENST00000244302 CTXND1A0A1B0GTU2 59 aa10.2□□□□□ -0.78
HIF3A-201ENST00000244302 PHOX2AO14813 284 aa10.2□□□□□ -0.78
HIF3A-201ENST00000244302 HIST1H1BP16401 226 aaKnown RBP10.2□□□□□ -0.78
HIF3A-201ENST00000244302 MEF2BQ02080 365 aaPredicted RBP10.2□□□□□ -0.78
HIF3A-201ENST00000244302 SSX7Q7RTT5 188 aa10.2□□□□□ -0.78
HIF3A-201ENST00000244302 OR10D4PQ8NGN7 298 aa10.2□□□□□ -0.78
HIF3A-201ENST00000244302 CIB3Q96Q77 187 aaPredicted RBP10.2□□□□□ -0.78
HIF3A-201ENST00000244302 PYGO2Q9BRQ0 406 aa10.2□□□□□ -0.78
HIF3A-201ENST00000244302 SRD5A3Q9H8P0 318 aa10.2□□□□□ -0.78
HIF3A-201ENST00000244302 YAE1D1Q9NRH1 226 aa10.2□□□□□ -0.78
HIF3A-201ENST00000244302 HIVEP2P31629 2446 aa10.2□□□□□ -0.78
HIF3A-201ENST00000244302 LY86O95711 162 aa10.19□□□□□ -0.78
HIF3A-201ENST00000244302 PSMB3P49720 205 aa10.19□□□□□ -0.78
HIF3A-201ENST00000244302 TMEM241Q24JQ0 296 aa10.19□□□□□ -0.78
HIF3A-201ENST00000244302 C5orf56Q8N8D9 126 aa10.19□□□□□ -0.78
HIF3A-201ENST00000244302 ABHD5Q8WTS1 349 aa10.19□□□□□ -0.78
HIF3A-201ENST00000244302 FRZBQ92765 325 aa10.19□□□□□ -0.78
HIF3A-201ENST00000244302 RBM14Q96PK6 669 aaKnown RBP10.19□□□□□ -0.78
HIF3A-201ENST00000244302 SMIM7Q9BQ49 75 aa10.19□□□□□ -0.78
HIF3A-201ENST00000244302 FNDC4Q9H6D8 234 aaPredicted RBP10.19□□□□□ -0.78
HIF3A-201ENST00000244302 A6NDX4 124 aa10.19□□□□□ -0.78
HIF3A-201ENST00000244302 G3V318 75 aa10.19□□□□□ -0.78
HIF3A-201ENST00000244302 SOX15O60248 233 aa10.19□□□□□ -0.78
HIF3A-201ENST00000244302 FGF8P55075 233 aaPredicted RBP10.19□□□□□ -0.78
HIF3A-201ENST00000244302 ELLP55199 621 aaPredicted RBP10.19□□□□□ -0.78
HIF3A-201ENST00000244302 BSXQ3C1V8 233 aa10.19□□□□□ -0.78
HIF3A-201ENST00000244302 ARSJQ5FYB0 599 aaPredicted RBP10.19□□□□□ -0.78
HIF3A-201ENST00000244302 OR5T1Q8NG75 326 aa10.19□□□□□ -0.78
HIF3A-201ENST00000244302 OR10P1Q8NGE3 313 aa10.19□□□□□ -0.78
HIF3A-201ENST00000244302 OR2T6Q8NHC8 308 aa10.19□□□□□ -0.78
HIF3A-201ENST00000244302 S4R3C0 116 aa10.19□□□□□ -0.78
HIF3A-201ENST00000244302 NIPBLQ6KC79 2804 aaeCLIP10.18□□□□□ -0.78
HIF3A-201ENST00000244302 ZNF562Q6V9R5 426 aa10.18□□□□□ -0.78
HIF3A-201ENST00000244302 RASL11BQ9BPW5 248 aa10.18□□□□□ -0.78
HIF3A-201ENST00000244302 SMCO3A2RU48 225 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms