RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 GALNT14Q96FL9 552 aa11.92□□□□□ -0.5
CLN3-264ENST00000637985 BCL7BQ9BQE9 202 aa11.92□□□□□ -0.5
CLN3-264ENST00000637985 C20orf24Q9BUV8 137 aa11.92□□□□□ -0.5
CLN3-264ENST00000637985 APOBP04114 4563 aaKnown RBP11.92□□□□□ -0.5
CLN3-264ENST00000637985 M0R2N4 97 aa11.91□□□□□ -0.5
CLN3-264ENST00000637985 CTDSP2O14595 271 aa11.91□□□□□ -0.5
CLN3-264ENST00000637985 CTDSPLO15194 276 aa11.91□□□□□ -0.5
CLN3-264ENST00000637985 MT-CO2P00403 227 aa11.91□□□□□ -0.5
CLN3-264ENST00000637985 CTSDP07339 412 aaPredicted RBP11.91□□□□□ -0.5
CLN3-264ENST00000637985 TRIM16LQ309B1 348 aa11.91□□□□□ -0.5
CLN3-264ENST00000637985 CLVS1Q8IUQ0 354 aaPredicted RBP11.91□□□□□ -0.5
CLN3-264ENST00000637985 POM121L12Q8N7R1 296 aa11.91□□□□□ -0.5
CLN3-264ENST00000637985 OR13C8Q8NGS7 320 aa11.91□□□□□ -0.5
CLN3-264ENST00000637985 OR11H2Q8NH07 326 aa11.91□□□□□ -0.5
CLN3-264ENST00000637985 A0A0B4J293 547 aa11.9□□□□□ -0.5
CLN3-264ENST00000637985 IFNA17P01571 189 aa11.9□□□□□ -0.5
CLN3-264ENST00000637985 UCP1P25874 307 aa11.9□□□□□ -0.5
CLN3-264ENST00000637985 SNCAP37840 140 aa11.9□□□□□ -0.5
CLN3-264ENST00000637985 TMBIM6P55061 237 aa11.9□□□□□ -0.5
CLN3-264ENST00000637985 IZUMO4Q1ZYL8 232 aa11.9□□□□□ -0.5
CLN3-264ENST00000637985 LGALS9BQ3B8N2 356 aa11.9□□□□□ -0.5
CLN3-264ENST00000637985 Q8N1X5 172 aa11.9□□□□□ -0.5
CLN3-264ENST00000637985 SLC35G3Q8N808 338 aa11.9□□□□□ -0.5
CLN3-264ENST00000637985 MARCH1Q8TCQ1 289 aa11.9□□□□□ -0.5
CLN3-264ENST00000637985 SMIM4Q8WVI0 70 aa11.9□□□□□ -0.5
CLN3-264ENST00000637985 RRNAD1Q96FB5 475 aaKnown RBP11.9□□□□□ -0.5
CLN3-264ENST00000637985 OR10C1Q96KK4 312 aa11.9□□□□□ -0.5
CLN3-264ENST00000637985 PDCD10Q9BUL8 212 aa11.9□□□□□ -0.5
CLN3-264ENST00000637985 NXF2Q9GZY0 626 aaKnown RBP11.9□□□□□ -0.5
CLN3-264ENST00000637985 CSTL1Q9H114 145 aa11.9□□□□□ -0.5
CLN3-264ENST00000637985 CCDC59Q9P031 241 aaKnown RBP11.9□□□□□ -0.5
CLN3-264ENST00000637985 DMBT1Q9UGM3 2413 aaPredicted RBP11.9□□□□□ -0.5
CLN3-264ENST00000637985 IGHV4-4A0A075B6R2 117 aa11.89□□□□□ -0.51
CLN3-264ENST00000637985 IGHV3OR16-8A0A075B7F1 116 aa11.89□□□□□ -0.51
CLN3-264ENST00000637985 DISC1C4P0D8 188 aa11.89□□□□□ -0.51
CLN3-264ENST00000637985 DEFB4AO15263 64 aa11.89□□□□□ -0.51
CLN3-264ENST00000637985 ST8SIA3O43173 380 aa11.89□□□□□ -0.51
CLN3-264ENST00000637985 GNG7O60262 68 aa11.89□□□□□ -0.51
CLN3-264ENST00000637985 SUB1P53999 127 aaKnown RBP eCLIP11.89□□□□□ -0.51
CLN3-264ENST00000637985 SURF2Q15527 256 aaPredicted RBP11.89□□□□□ -0.51
CLN3-264ENST00000637985 SP6Q3SY56 376 aa11.89□□□□□ -0.51
CLN3-264ENST00000637985 DYNC2LI1Q8TCX1 351 aa11.89□□□□□ -0.51
CLN3-264ENST00000637985 PINX1Q96BK5 328 aaKnown RBP11.89□□□□□ -0.51
CLN3-264ENST00000637985 DIRAS2Q96HU8 199 aa11.89□□□□□ -0.51
CLN3-264ENST00000637985 ZNF414Q96IQ9 312 aa11.89□□□□□ -0.51
CLN3-264ENST00000637985 HRH4Q9H3N8 390 aa11.89□□□□□ -0.51
CLN3-264ENST00000637985 SMPXQ9UHP9 88 aa11.89□□□□□ -0.51
CLN3-264ENST00000637985 C14orf166Q9Y224 244 aaKnown RBP11.89□□□□□ -0.51
CLN3-264ENST00000637985 IGHV7-4-1A0A0J9YVY3 117 aa11.88□□□□□ -0.51
CLN3-264ENST00000637985 OR4C46A6NHA9 309 aa11.88□□□□□ -0.51
CLN3-264ENST00000637985 MPTX1A8MV57 137 aa11.88□□□□□ -0.51
CLN3-264ENST00000637985 CORTO00230 105 aa11.88□□□□□ -0.51
CLN3-264ENST00000637985 ZNF207O43670 478 aaKnown RBP11.88□□□□□ -0.51
CLN3-264ENST00000637985 YIF1AO95070 293 aa11.88□□□□□ -0.51
CLN3-264ENST00000637985 NPBWR1P48145 328 aa11.88□□□□□ -0.51
CLN3-264ENST00000637985 IL18Q14116 193 aa11.88□□□□□ -0.51
CLN3-264ENST00000637985 SPINK9Q5DT21 86 aa11.88□□□□□ -0.51
CLN3-264ENST00000637985 PVRIGQ6DKI7 326 aa11.88□□□□□ -0.51
CLN3-264ENST00000637985 FAM219AQ8IW50 185 aa11.88□□□□□ -0.51
CLN3-264ENST00000637985 TMEM116Q8NCL8 245 aa11.88□□□□□ -0.51
CLN3-264ENST00000637985 DUSP18Q8NEJ0 188 aa11.88□□□□□ -0.51
CLN3-264ENST00000637985 TRAV14DV4A0A0A6YYC5 116 aa11.87□□□□□ -0.51
CLN3-264ENST00000637985 CHEK1O14757 476 aa11.87□□□□□ -0.51
CLN3-264ENST00000637985 CDS2O95674 445 aa11.87□□□□□ -0.51
CLN3-264ENST00000637985 AKAIN1P0CW23 69 aa11.87□□□□□ -0.51
CLN3-264ENST00000637985 RNASE11Q8TAA1 199 aaKnown RBP11.87□□□□□ -0.51
CLN3-264ENST00000637985 RTBDNQ9BSG5 229 aaPredicted RBP11.87□□□□□ -0.51
CLN3-264ENST00000637985 RHPN1-AS1Q9BWJ2 59 aa11.87□□□□□ -0.51
CLN3-264ENST00000637985 TMEM222Q9H0R3 208 aa11.87□□□□□ -0.51
CLN3-264ENST00000637985 NAA60Q9H7X0 242 aa11.87□□□□□ -0.51
CLN3-264ENST00000637985 ENY2Q9NPA8 101 aa11.87□□□□□ -0.51
CLN3-264ENST00000637985 TEX13DA0A0J9YY54 714 aaPredicted RBP11.86□□□□□ -0.51
CLN3-264ENST00000637985 IGHV3-48P01763 117 aa11.86□□□□□ -0.51
CLN3-264ENST00000637985 ETV6P41212 452 aa11.86□□□□□ -0.51
CLN3-264ENST00000637985 RPL5P46777 297 aaKnown RBP11.86□□□□□ -0.51
CLN3-264ENST00000637985 HOXA1P49639 335 aaPredicted RBP11.86□□□□□ -0.51
CLN3-264ENST00000637985 DHODHQ02127 395 aa11.86□□□□□ -0.51
CLN3-264ENST00000637985 AARDQ4LEZ3 155 aa11.86□□□□□ -0.51
CLN3-264ENST00000637985 FAAP20Q6NZ36 180 aa11.86□□□□□ -0.51
CLN3-264ENST00000637985 OR4C16Q8NGL9 310 aa11.86□□□□□ -0.51
CLN3-264ENST00000637985 OR52E5Q8NH55 327 aa11.86□□□□□ -0.51
CLN3-264ENST00000637985 GLYATL2Q8WU03 294 aa11.86□□□□□ -0.51
CLN3-264ENST00000637985 RNF2Q99496 336 aa11.86□□□□□ -0.51
CLN3-264ENST00000637985 PRRT1Q99946 306 aa11.86□□□□□ -0.51
CLN3-264ENST00000637985 GINS3Q9BRX5 216 aa11.86□□□□□ -0.51
CLN3-264ENST00000637985 RSL24D1Q9UHA3 163 aaKnown RBP11.86□□□□□ -0.51
CLN3-264ENST00000637985 GPR132Q9UNW8 380 aa11.86□□□□□ -0.51
CLN3-264ENST00000637985 A0A0G2JRQ6 117 aa11.85□□□□□ -0.51
CLN3-264ENST00000637985 GSTZ1O43708 216 aaPredicted RBP11.85□□□□□ -0.51
CLN3-264ENST00000637985 NOL3O60936 208 aaKnown RBP11.85□□□□□ -0.51
CLN3-264ENST00000637985 CD5P06127 495 aa11.85□□□□□ -0.51
CLN3-264ENST00000637985 OR5AC1P0C628 307 aa11.85□□□□□ -0.51
CLN3-264ENST00000637985 P0DMU3 169 aa11.85□□□□□ -0.51
CLN3-264ENST00000637985 FAM231AP0DMU4 169 aa11.85□□□□□ -0.51
CLN3-264ENST00000637985 FAM231CP0DMU5 169 aa11.85□□□□□ -0.51
CLN3-264ENST00000637985 RNASE2P10153 161 aaKnown RBP11.85□□□□□ -0.51
CLN3-264ENST00000637985 CMC4P56277 68 aaPredicted RBP11.85□□□□□ -0.51
CLN3-264ENST00000637985 SPCS3P61009 180 aa11.85□□□□□ -0.51
CLN3-264ENST00000637985 RBPMSQ93062 196 aaKnown RBP11.85□□□□□ -0.51
CLN3-264ENST00000637985 RNF126Q9BV68 326 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms