RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 RPL12P30050 165 aaKnown RBP-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 MARCKSL1P49006 195 aa-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 HADHBP55084 474 aaKnown RBP-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 LINC00322Q6ZN03 302 aaPredicted RBP-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 CLECL1Q8IZS7 167 aa-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 SIGLECL1Q8N7X8 197 aa-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 PLPP5Q8NEB5 264 aa-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 OR10J5Q8NHC4 309 aa-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 MRPL30Q8TCC3 161 aaKnown RBP-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 IMP4Q96G21 291 aaKnown RBP-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 NABP2Q9BQ15 211 aa-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 C7orf50Q9BRJ6 194 aaKnown RBP-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 CHMP4BQ9H444 224 aaKnown RBP-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 HS3ST2Q9Y278 367 aa-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 ZNF106Q9H2Y7 1883 aaKnown RBP-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 RAD50Q92878 1312 aa-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 TENM4Q6N022 2769 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 COL7A1Q02388 2944 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 STAB2Q8WWQ8 2551 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 A0A1B0GV50 99 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 INMT-MINDY4F8WBC2 141 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 M0R378 163 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 IGKV1-5P01602 117 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 MYL12AP19105 171 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 HBA1P69905 142 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 DEFB113Q30KQ7 82 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 CLVS2Q5SYC1 327 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 C1orf195Q5TG92 126 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 HIST3H2BBQ8N257 126 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 TERB2Q8NHR7 220 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 DCSTAMPQ9H295 470 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 C3orf18Q9UK00 162 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 SLC35A3Q9Y2D2 325 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 HERC1Q15751 4861 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 DENND4CQ5VZ89 1909 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 CEP192Q8TEP8 1941 aa-0.15□□□□□ -2.43
SCN1A-208ENST00000625916 CACNA1AO00555 2505 aa-0.16□□□□□ -2.43
SCN1A-208ENST00000625916 TRAV3A0A0B4J244 114 aa-0.16□□□□□ -2.44
SCN1A-208ENST00000625916 TRBV6-4A0A1B0GX49 114 aa-0.16□□□□□ -2.44
SCN1A-208ENST00000625916 FABP12A6NFH5 140 aa-0.16□□□□□ -2.44
SCN1A-208ENST00000625916 GOLGA8KD6RF30 607 aa-0.16□□□□□ -2.44
SCN1A-208ENST00000625916 KLF7O75840 302 aaPredicted RBP-0.16□□□□□ -2.44
SCN1A-208ENST00000625916 KRTAP26-1Q6PEX3 210 aa-0.16□□□□□ -2.44
SCN1A-208ENST00000625916 SPINK6Q6UWN8 80 aa-0.16□□□□□ -2.44
SCN1A-208ENST00000625916 Q6ZS92 163 aa-0.16□□□□□ -2.44
SCN1A-208ENST00000625916 LRRC25Q8N386 305 aaPredicted RBP-0.16□□□□□ -2.44
SCN1A-208ENST00000625916 OR13C4Q8NGS5 318 aa-0.16□□□□□ -2.44
SCN1A-208ENST00000625916 GPR146Q96CH1 333 aa-0.16□□□□□ -2.44
SCN1A-208ENST00000625916 CMTM5Q96DZ9 223 aa-0.16□□□□□ -2.44
SCN1A-208ENST00000625916 SLC39A9Q9NUM3 307 aa-0.16□□□□□ -2.44
SCN1A-208ENST00000625916 PLEKHJ1Q9NW61 149 aa-0.16□□□□□ -2.44
SCN1A-208ENST00000625916 NHP2Q9NX24 153 aaKnown RBP-0.16□□□□□ -2.44
SCN1A-208ENST00000625916 ASH1LQ9NR48 2969 aaKnown RBP-0.16□□□□□ -2.44
SCN1A-208ENST00000625916 RALGAPA2Q2PPJ7 1873 aa-0.16□□□□□ -2.44
SCN1A-208ENST00000625916 TLCD2A6NGC4 264 aa-0.17□□□□□ -2.44
SCN1A-208ENST00000625916 EVPLLA8MZ36 301 aa-0.17□□□□□ -2.44
SCN1A-208ENST00000625916 HSBP1L1C9JCN9 74 aa-0.17□□□□□ -2.44
SCN1A-208ENST00000625916 CCL16O15467 120 aa-0.17□□□□□ -2.44
SCN1A-208ENST00000625916 APOEP02649 317 aa-0.17□□□□□ -2.44
SCN1A-208ENST00000625916 HOXA6P31267 233 aa-0.17□□□□□ -2.44
SCN1A-208ENST00000625916 NAA20P61599 178 aa-0.17□□□□□ -2.44
SCN1A-208ENST00000625916 LPCAT3Q6P1A2 487 aa-0.17□□□□□ -2.44
SCN1A-208ENST00000625916 TEX47Q8TBZ9 253 aa-0.17□□□□□ -2.44
SCN1A-208ENST00000625916 KLK6Q92876 244 aa-0.17□□□□□ -2.44
SCN1A-208ENST00000625916 TSPAN32Q96QS1 320 aa-0.17□□□□□ -2.44
SCN1A-208ENST00000625916 XPNPEP1Q9NQW7 623 aa-0.17□□□□□ -2.44
SCN1A-208ENST00000625916 TP73-AS1Q9UF72 201 aa-0.17□□□□□ -2.44
SCN1A-208ENST00000625916 ERGIC3Q9Y282 383 aa-0.17□□□□□ -2.44
SCN1A-208ENST00000625916 MYO3BQ8WXR4 1341 aa-0.17□□□□□ -2.44
SCN1A-208ENST00000625916 ABCC11Q96J66 1382 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 K7EIL1 84 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 IFNA10P01566 189 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 C8orf88P0DMB2 117 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 PSMB6P28072 239 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 ZNF137PP52743 207 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 BLVRAP53004 296 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 UBE2G2P60604 165 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 MLLT11Q13015 90 aaPredicted RBP-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 KRTAP6-1Q3LI64 71 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 C6orf52Q5T4I8 152 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 LRRN1Q6UXK5 716 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 PLEKHG7Q6ZR37 379 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 LINC00301Q8NCQ3 95 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 OR13D1Q8NGV5 346 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 PIGXQ8TBF5 258 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 FAM103A1Q9BTL3 118 aaKnown RBP-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 C6orf62Q9GZU0 229 aaPredicted RBP-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 OR51V1Q9H2C8 321 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 FBXL12Q9NXK8 326 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 EPDR1Q9UM22 224 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 TNFSF18Q9UNG2 199 aa-0.18□□□□□ -2.44
SCN1A-208ENST00000625916 IGLV3-32A0A0A0MS00 114 aa-0.19□□□□□ -2.44
SCN1A-208ENST00000625916 DPRXA6NFQ7 191 aa-0.19□□□□□ -2.44
SCN1A-208ENST00000625916 S100A4P26447 101 aaKnown RBP-0.19□□□□□ -2.44
SCN1A-208ENST00000625916 ESRGQ1W209 222 aa-0.19□□□□□ -2.44
SCN1A-208ENST00000625916 ST6GALNAC3Q8NDV1 305 aa-0.19□□□□□ -2.44
SCN1A-208ENST00000625916 OR51D1Q8NGF3 324 aa-0.19□□□□□ -2.44
SCN1A-208ENST00000625916 H1FXQ92522 213 aaKnown RBP-0.19□□□□□ -2.44
SCN1A-208ENST00000625916 OSTCQ9NRP0 149 aa-0.19□□□□□ -2.44
SCN1A-208ENST00000625916 C14orf105Q9NVL8 296 aa-0.19□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms