RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 TNFRSF1AP19438 455 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 COX7A1P24310 79 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 NHLH1Q02575 133 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 KIR2DL5AQ8N109 375 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 MCRIP2Q9BUT9 160 aaKnown RBP10.35□□□□□ -0.75
LIG1-221ENST00000613670 A0A1W2PN81 502 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 NUDT3O95989 172 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 OR5AL1P0C617 328 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 BRWD1-AS2P59051 145 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 OR52E5Q8NH55 327 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 PERPQ96FX8 193 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 MRPL20Q9BYC9 149 aaKnown RBP10.35□□□□□ -0.75
LIG1-221ENST00000613670 IGHV1-18A0A0C4DH31 117 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 OR4C46A6NHA9 309 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 DEFB123Q8N688 67 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 VSTM2AQ8TAG5 236 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 MAP1LC3CQ9BXW4 147 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 V9GYV3 84 aa10.35□□□□□ -0.75
LIG1-221ENST00000613670 LOC389332A0A1B0GUA5 103 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 SRRM5B3KS81 715 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 UPK2O00526 184 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 UQCRFS1P47985 274 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 PRRX1P54821 245 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 MAJINQ3KP22 176 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 DUX4L9Q6RFH8 374 aaPredicted RBP10.34□□□□□ -0.75
LIG1-221ENST00000613670 OR8A1Q8NGG7 326 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 TMEM70Q9BUB7 260 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 CLEC7AQ9BXN2 247 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 ATG2AQ2TAZ0 1938 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 LRRC10Q5BKY1 277 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 ZFP30Q9Y2G7 519 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 MYO15AQ9UKN7 3530 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 K7EQM0 130 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 BMPR1BO00238 502 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 WNT2P09544 360 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 KIR2DL2P43627 348 aaPredicted RBP10.34□□□□□ -0.75
LIG1-221ENST00000613670 COTL1Q14019 142 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 PRR7Q8TB68 274 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 TSKUQ8WUA8 353 aa10.34□□□□□ -0.75
LIG1-221ENST00000613670 SNRNP40Q96DI7 357 aaKnown RBP10.34□□□□□ -0.75
LIG1-221ENST00000613670 SH2D7A6NKC9 451 aaPredicted RBP10.33□□□□□ -0.76
LIG1-221ENST00000613670 GGTLC3B5MD39 225 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 SS18L1O75177 396 aaPredicted RBP10.33□□□□□ -0.76
LIG1-221ENST00000613670 HYPMO75409 117 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 CD24P25063 80 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 DEFB124Q8NES8 71 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 TEX50A0A1B0GTY4 177 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 SPAARA0A1B0GVQ0 90 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 TRIP6Q15654 476 aaKnown RBP10.33□□□□□ -0.76
LIG1-221ENST00000613670 OR10J3Q5JRS4 329 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 C11orf53Q8IXP5 236 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 STPG4Q8N801 248 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 NUDT10Q8NFP7 164 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 FAM222BQ8WU58 562 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 NUDT11Q96G61 164 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 GP6Q9HCN6 339 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 CELSR3Q9NYQ7 3312 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 A0A1W2PRE2 83 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 CD69Q07108 199 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 Q0VG73 95 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 TEX43Q6ZNM6 134 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 TMEM136Q6ZRR5 245 aa10.33□□□□□ -0.76
LIG1-221ENST00000613670 NBEAP1P0C6P0 100 aa10.32□□□□□ -0.76
LIG1-221ENST00000613670 PRCDQ00LT1 54 aa10.32□□□□□ -0.76
LIG1-221ENST00000613670 VWC2Q2TAL6 325 aa10.32□□□□□ -0.76
LIG1-221ENST00000613670 ZNF714Q96N38 554 aa10.32□□□□□ -0.76
LIG1-221ENST00000613670 SLC25A33Q9BSK2 321 aa10.32□□□□□ -0.76
LIG1-221ENST00000613670 EYSQ5T1H1 3165 aa10.32□□□□□ -0.76
LIG1-221ENST00000613670 C15orf65H3BRN8 121 aa10.32□□□□□ -0.76
LIG1-221ENST00000613670 SLAQ13239 276 aa10.32□□□□□ -0.76
LIG1-221ENST00000613670 SRSF6Q13247 344 aaKnown RBP10.32□□□□□ -0.76
LIG1-221ENST00000613670 SLC25A34Q6PIV7 304 aa10.32□□□□□ -0.76
LIG1-221ENST00000613670 MDS2Q8NDY4 140 aa10.32□□□□□ -0.76
LIG1-221ENST00000613670 GRAMD2BQ96HH9 432 aa10.32□□□□□ -0.76
LIG1-221ENST00000613670 DCAF16Q9NXF7 216 aa10.32□□□□□ -0.76
LIG1-221ENST00000613670 ZNF891A8MT65 544 aaPredicted RBP10.32□□□□□ -0.76
LIG1-221ENST00000613670 HBBP68871 147 aa10.32□□□□□ -0.76
LIG1-221ENST00000613670 FAM168AQ92567 244 aa10.32□□□□□ -0.76
LIG1-221ENST00000613670 C19orf24Q9BVV8 132 aa10.32□□□□□ -0.76
LIG1-221ENST00000613670 TRAV9-2A0A087WT02 112 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 MUC21A0A0G2JKD1 596 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 MUC21A0A140T8X8 626 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 PPOXP50336 477 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 ZNF138P52744 262 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 FAM27E3Q08E93 113 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 MUC21Q5SSG8 566 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 GOLT1AQ6ZVE7 132 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 FAM90A1Q86YD7 464 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 MRPL32Q9BYC8 188 aaKnown RBP10.31□□□□□ -0.76
LIG1-221ENST00000613670 FOXA2Q9Y261 457 aaPredicted RBP10.31□□□□□ -0.76
LIG1-221ENST00000613670 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.31□□□□□ -0.76
LIG1-221ENST00000613670 AHRRA9YTQ3 701 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 IGLC2P0DOY2 106 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 IGLC3P0DOY3 106 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 CA7P43166 264 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 SELENOTP62341 195 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 NIT1Q86X76 327 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 NUP35Q8NFH5 326 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 Q8TCH9 128 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 SRSF12Q8WXF0 261 aaKnown RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms