RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 CCSO14618 274 aa12.63□□□□□ -0.39
CCDC28A-202ENST00000611852 SYNGR2O43760 224 aa12.63□□□□□ -0.39
CCDC28A-202ENST00000611852 IFNA10P01566 189 aa12.63□□□□□ -0.39
CCDC28A-202ENST00000611852 OPRK1P41145 380 aa12.63□□□□□ -0.39
CCDC28A-202ENST00000611852 INSL3P51460 131 aa12.63□□□□□ -0.39
CCDC28A-202ENST00000611852 MFAP4P55083 255 aa12.63□□□□□ -0.39
CCDC28A-202ENST00000611852 FCN2Q15485 313 aa12.63□□□□□ -0.39
CCDC28A-202ENST00000611852 SPSB3Q6PJ21 355 aa12.63□□□□□ -0.39
CCDC28A-202ENST00000611852 ST6GAL2Q96JF0 529 aa12.63□□□□□ -0.39
CCDC28A-202ENST00000611852 TXN2Q99757 166 aa12.63□□□□□ -0.39
CCDC28A-202ENST00000611852 CHRDL1Q9BU40 450 aa12.63□□□□□ -0.39
CCDC28A-202ENST00000611852 SAP30O75446 220 aa12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 CTSGP08311 255 aa12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 IAPPP10997 89 aa12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 ADMP35318 185 aa12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 NKX2-1P43699 371 aaPredicted RBP12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 EGFEM1PQ0D2K5 195 aa12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 MLANAQ16655 118 aa12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 IL34Q6ZMJ4 242 aa12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 NOXA1Q86UR1 476 aa12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 ZBTB8BQ8NAP8 495 aaPredicted RBP12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 RNASEH2CQ8TDP1 164 aaKnown RBP12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 ELOVL1Q9BW60 279 aa12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 GAR1Q9NY12 217 aaKnown RBP12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 MEGF8Q7Z7M0 2845 aa12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 LGALS9O00182 355 aa12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 ATP5IP56385 69 aaPredicted RBP12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 FAM106AQ4KMX7 169 aa12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 TCTE3Q8IZS6 198 aa12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 OR11H7Q8NGC8 314 aa12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 CIB3Q96Q77 187 aaPredicted RBP12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 OR4C12Q96R67 309 aa12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 GSKIPQ9P0R6 139 aa12.62□□□□□ -0.39
CCDC28A-202ENST00000611852 IGHV3-35A0A0C4DH35 117 aa12.61□□□□□ -0.39
CCDC28A-202ENST00000611852 WRBO00258 174 aa12.61□□□□□ -0.39
CCDC28A-202ENST00000611852 EIF2B2P49770 351 aaKnown RBP12.61□□□□□ -0.39
CCDC28A-202ENST00000611852 KRTAP10-11P60412 298 aa12.61□□□□□ -0.39
CCDC28A-202ENST00000611852 POLR2GP62487 172 aaKnown RBP eCLIP12.61□□□□□ -0.39
CCDC28A-202ENST00000611852 DEFA6Q01524 100 aa12.61□□□□□ -0.39
CCDC28A-202ENST00000611852 REC114Q7Z4M0 266 aa12.61□□□□□ -0.39
CCDC28A-202ENST00000611852 ZNF436Q9C0F3 470 aaPredicted RBP12.61□□□□□ -0.39
CCDC28A-202ENST00000611852 MRPL36Q9P0J6 103 aaKnown RBP12.61□□□□□ -0.39
CCDC28A-202ENST00000611852 PEMTQ9UBM1 199 aa12.61□□□□□ -0.39
CCDC28A-202ENST00000611852 MGAT4CQ9UBM8 478 aa12.61□□□□□ -0.39
CCDC28A-202ENST00000611852 RPS10-NUDT3A0A1W2PQS6 291 aa12.6□□□□□ -0.39
CCDC28A-202ENST00000611852 C5orf51A6NDU8 294 aa12.6□□□□□ -0.39
CCDC28A-202ENST00000611852 C15orf62A8K5M9 175 aa12.6□□□□□ -0.39
CCDC28A-202ENST00000611852 FAM25EA8MYX2 175 aa12.6□□□□□ -0.39
CCDC28A-202ENST00000611852 GNG7O60262 68 aa12.6□□□□□ -0.39
CCDC28A-202ENST00000611852 CSN3P07498 182 aa12.6□□□□□ -0.39
CCDC28A-202ENST00000611852 NPBWR1P48145 328 aa12.6□□□□□ -0.39
CCDC28A-202ENST00000611852 ZFP69Q49AA0 526 aa12.6□□□□□ -0.39
CCDC28A-202ENST00000611852 UNQ9165/PRO28630Q6UXU0 137 aa12.6□□□□□ -0.39
CCDC28A-202ENST00000611852 ZNF320A2RRD8 509 aa12.59□□□□□ -0.39
CCDC28A-202ENST00000611852 A8MWP6 167 aa12.59□□□□□ -0.39
CCDC28A-202ENST00000611852 NUPL2O15504 423 aaKnown RBP12.59□□□□□ -0.39
CCDC28A-202ENST00000611852 LY86O95711 162 aa12.59□□□□□ -0.39
CCDC28A-202ENST00000611852 SCGB1D2O95969 90 aa12.59□□□□□ -0.39
CCDC28A-202ENST00000611852 CXCL3P19876 107 aa12.59□□□□□ -0.39
CCDC28A-202ENST00000611852 OR4X1Q8NH49 305 aa12.59□□□□□ -0.39
CCDC28A-202ENST00000611852 ZNF414Q96IQ9 312 aa12.59□□□□□ -0.39
CCDC28A-202ENST00000611852 SIGLEC8Q9NYZ4 499 aa12.59□□□□□ -0.39
CCDC28A-202ENST00000611852 NDUFA4O00483 81 aa12.58□□□□□ -0.4
CCDC28A-202ENST00000611852 SSSCA1O60232 199 aa12.58□□□□□ -0.4
CCDC28A-202ENST00000611852 CLN5O75503 358 aa12.58□□□□□ -0.4
CCDC28A-202ENST00000611852 TMEM50AO95807 157 aa12.58□□□□□ -0.4
CCDC28A-202ENST00000611852 MBPP02686 304 aaPredicted RBP12.58□□□□□ -0.4
CCDC28A-202ENST00000611852 PRB2P02812 416 aaPredicted RBP12.58□□□□□ -0.4
CCDC28A-202ENST00000611852 IFNA4P05014 189 aa12.58□□□□□ -0.4
CCDC28A-202ENST00000611852 SLC25A4P12235 298 aa12.58□□□□□ -0.4
CCDC28A-202ENST00000611852 ETFRF1Q6IPR1 90 aa12.58□□□□□ -0.4
CCDC28A-202ENST00000611852 PRSS54Q6PEW0 395 aa12.58□□□□□ -0.4
CCDC28A-202ENST00000611852 GSG1LQ6UXU4 331 aa12.58□□□□□ -0.4
CCDC28A-202ENST00000611852 ADAMTSL5Q6ZMM2 481 aa12.58□□□□□ -0.4
CCDC28A-202ENST00000611852 C2orf50Q96LR7 162 aa12.58□□□□□ -0.4
CCDC28A-202ENST00000611852 C2orf70A6NJV1 201 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 H3BP45 60 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 IGLV1-51P01701 117 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 RAB11AP62491 216 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 RPP30P78346 268 aaKnown RBP12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 RELQ04864 619 aaPredicted RBP12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 CD69Q07108 199 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 SPANXN5Q5MJ07 72 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 HAPLN4Q86UW8 402 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 TMEM116Q8NCL8 245 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 TMEM190Q8WZ59 177 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 RCL1Q9Y2P8 373 aaKnown RBP12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 TMEM213A2RRL7 107 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 GOSR2O14653 212 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 GIPP09681 153 aaPredicted RBP12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 EDN2P20800 178 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 RND2P52198 227 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 PAX9P55771 341 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 IL15RAQ13261 267 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 SLC16A13Q7RTY0 426 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 ASB13Q8WXK3 278 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 SMIM8Q96KF7 97 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 RAB40CQ96S21 281 aa12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 ZMAT5Q9UDW3 170 aaKnown RBP12.57□□□□□ -0.4
CCDC28A-202ENST00000611852 PAIP2BQ9ULR5 123 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms