RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 OR4C12Q96R67 309 aa10.78□□□□□ -0.68
SHKBP1-217ENST00000598558 PRR25Q96S07 402 aa10.78□□□□□ -0.68
SHKBP1-217ENST00000598558 ATP6V0BQ99437 205 aa10.78□□□□□ -0.68
SHKBP1-217ENST00000598558 ELOVL1Q9BW60 279 aa10.78□□□□□ -0.68
SHKBP1-217ENST00000598558 GPR61Q9BZJ8 451 aa10.78□□□□□ -0.68
SHKBP1-217ENST00000598558 HIPK2Q9H2X6 1198 aa10.78□□□□□ -0.68
SHKBP1-217ENST00000598558 PIGBOS1A0A0B4J2F0 54 aa10.77□□□□□ -0.69
SHKBP1-217ENST00000598558 ZNF320A2RRD8 509 aa10.77□□□□□ -0.69
SHKBP1-217ENST00000598558 C2orf70A6NJV1 201 aa10.77□□□□□ -0.69
SHKBP1-217ENST00000598558 FAM90A26D6RGX4 464 aa10.77□□□□□ -0.69
SHKBP1-217ENST00000598558 INMT-MINDY4F8WBC2 141 aa10.77□□□□□ -0.69
SHKBP1-217ENST00000598558 WRBO00258 174 aa10.77□□□□□ -0.69
SHKBP1-217ENST00000598558 SYNGR2O43760 224 aa10.77□□□□□ -0.69
SHKBP1-217ENST00000598558 IFNA10P01566 189 aa10.77□□□□□ -0.69
SHKBP1-217ENST00000598558 PAX9P55771 341 aa10.77□□□□□ -0.69
SHKBP1-217ENST00000598558 IAH1Q2TAA2 248 aaPredicted RBP10.77□□□□□ -0.69
SHKBP1-217ENST00000598558 ZBTB8BQ8NAP8 495 aaPredicted RBP10.77□□□□□ -0.69
SHKBP1-217ENST00000598558 TXN2Q99757 166 aa10.77□□□□□ -0.69
SHKBP1-217ENST00000598558 MARVELD1Q9BSK0 173 aa10.77□□□□□ -0.69
SHKBP1-217ENST00000598558 SIGLEC8Q9NYZ4 499 aa10.77□□□□□ -0.69
SHKBP1-217ENST00000598558 IFNA21P01568 189 aa10.76□□□□□ -0.69
SHKBP1-217ENST00000598558 FOLR2P14207 255 aa10.76□□□□□ -0.69
SHKBP1-217ENST00000598558 OPRK1P41145 380 aa10.76□□□□□ -0.69
SHKBP1-217ENST00000598558 FAM106AQ4KMX7 169 aa10.76□□□□□ -0.69
SHKBP1-217ENST00000598558 PRSS54Q6PEW0 395 aa10.76□□□□□ -0.69
SHKBP1-217ENST00000598558 SPSB3Q6PJ21 355 aa10.76□□□□□ -0.69
SHKBP1-217ENST00000598558 RNASEH2CQ8TDP1 164 aaKnown RBP10.76□□□□□ -0.69
SHKBP1-217ENST00000598558 CACFD1Q9UGQ2 172 aa10.76□□□□□ -0.69
SHKBP1-217ENST00000598558 U3KQ87 197 aa10.76□□□□□ -0.69
SHKBP1-217ENST00000598558 A8MWP6 167 aa10.75□□□□□ -0.69
SHKBP1-217ENST00000598558 CORTO00230 105 aa10.75□□□□□ -0.69
SHKBP1-217ENST00000598558 ZNF207O43670 478 aaKnown RBP10.75□□□□□ -0.69
SHKBP1-217ENST00000598558 IGKV1-17P01599 117 aa10.75□□□□□ -0.69
SHKBP1-217ENST00000598558 CBLN1P23435 193 aa10.75□□□□□ -0.69
SHKBP1-217ENST00000598558 DEFA1P59665 94 aa10.75□□□□□ -0.69
SHKBP1-217ENST00000598558 DEFA3P59666 94 aa10.75□□□□□ -0.69
SHKBP1-217ENST00000598558 IL15RAQ13261 267 aa10.75□□□□□ -0.69
SHKBP1-217ENST00000598558 OR4X1Q8NH49 305 aa10.75□□□□□ -0.69
SHKBP1-217ENST00000598558 TMEM190Q8WZ59 177 aa10.75□□□□□ -0.69
SHKBP1-217ENST00000598558 GSKIPQ9P0R6 139 aa10.75□□□□□ -0.69
SHKBP1-217ENST00000598558 PEMTQ9UBM1 199 aa10.75□□□□□ -0.69
SHKBP1-217ENST00000598558 PRSS46E5RG02 174 aa10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 H3BP45 60 aa10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 NDUFA4O00483 81 aa10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 NUPL2O15504 423 aaKnown RBP10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 GNG7O60262 68 aa10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 CLN5O75503 358 aa10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 MBPP02686 304 aaPredicted RBP10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 C8orf88P0DMB2 117 aa10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 NKX2-1P43699 371 aaPredicted RBP10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 NPBWR1P48145 328 aa10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 CD69Q07108 199 aa10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 DEFB114Q30KQ6 69 aa10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 TIGITQ495A1 244 aa10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 NPIPB3Q92617 1050 aa10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 WDR89Q96FK6 387 aaPredicted RBP10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 MLXQ9UH92 298 aa10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 ZNF256Q9Y2P7 627 aaPredicted RBP10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 RCL1Q9Y2P8 373 aaKnown RBP10.74□□□□□ -0.69
SHKBP1-217ENST00000598558 PRKDCP78527 4128 aaKnown RBP10.73□□□□□ -0.69
SHKBP1-217ENST00000598558 ZNF785A8K8V0 405 aa10.73□□□□□ -0.69
SHKBP1-217ENST00000598558 FAM25EA8MYX2 175 aa10.73□□□□□ -0.69
SHKBP1-217ENST00000598558 MED6O75586 246 aa10.73□□□□□ -0.69
SHKBP1-217ENST00000598558 CCNKO75909 580 aa10.73□□□□□ -0.69
SHKBP1-217ENST00000598558 SIX6O95475 246 aa10.73□□□□□ -0.69
SHKBP1-217ENST00000598558 SCGB1D2O95969 90 aa10.73□□□□□ -0.69
SHKBP1-217ENST00000598558 RND2P52198 227 aa10.73□□□□□ -0.69
SHKBP1-217ENST00000598558 CD300EQ496F6 205 aaPredicted RBP10.73□□□□□ -0.69
SHKBP1-217ENST00000598558 SPANXN5Q5MJ07 72 aa10.73□□□□□ -0.69
SHKBP1-217ENST00000598558 TOMM20LQ6UXN7 152 aa10.73□□□□□ -0.69
SHKBP1-217ENST00000598558 TMEM116Q8NCL8 245 aa10.73□□□□□ -0.69
SHKBP1-217ENST00000598558 C11orf1Q9H5F2 150 aa10.73□□□□□ -0.69
SHKBP1-217ENST00000598558 C5orf51A6NDU8 294 aa10.72□□□□□ -0.69
SHKBP1-217ENST00000598558 PMS2P5A8MQ11 134 aa10.72□□□□□ -0.69
SHKBP1-217ENST00000598558 SNRPGP15A8MWD9 76 aa10.72□□□□□ -0.69
SHKBP1-217ENST00000598558 SSSCA1O60232 199 aa10.72□□□□□ -0.69
SHKBP1-217ENST00000598558 IFNA4P05014 189 aa10.72□□□□□ -0.69
SHKBP1-217ENST00000598558 IGLC1P0CG04 106 aa10.72□□□□□ -0.69
SHKBP1-217ENST00000598558 GAMTQ14353 236 aa10.72□□□□□ -0.69
SHKBP1-217ENST00000598558 SLC16A13Q7RTY0 426 aa10.72□□□□□ -0.69
SHKBP1-217ENST00000598558 MRAPQ8TCY5 172 aa10.72□□□□□ -0.69
SHKBP1-217ENST00000598558 ACY3Q96HD9 319 aa10.72□□□□□ -0.69
SHKBP1-217ENST00000598558 SMIM8Q96KF7 97 aa10.72□□□□□ -0.69
SHKBP1-217ENST00000598558 C2orf50Q96LR7 162 aa10.72□□□□□ -0.69
SHKBP1-217ENST00000598558 C20orf24Q9BUV8 137 aa10.72□□□□□ -0.69
SHKBP1-217ENST00000598558 ZFAND3Q9H8U3 227 aa10.72□□□□□ -0.69
SHKBP1-217ENST00000598558 GAR1Q9NY12 217 aaKnown RBP10.72□□□□□ -0.69
SHKBP1-217ENST00000598558 LSM4Q9Y4Z0 139 aaKnown RBP10.72□□□□□ -0.69
SHKBP1-217ENST00000598558 IGKV1D-37A0A075B6S9 117 aa10.71□□□□□ -0.69
SHKBP1-217ENST00000598558 IGHV3-49A0A0A0MS15 119 aa10.71□□□□□ -0.69
SHKBP1-217ENST00000598558 RPS10-NUDT3A0A1W2PQS6 291 aa10.71□□□□□ -0.69
SHKBP1-217ENST00000598558 K7EMT4 169 aa10.71□□□□□ -0.69
SHKBP1-217ENST00000598558 PRAF2O60831 178 aa10.71□□□□□ -0.69
SHKBP1-217ENST00000598558 YIF1AO95070 293 aa10.71□□□□□ -0.69
SHKBP1-217ENST00000598558 LY86O95711 162 aa10.71□□□□□ -0.69
SHKBP1-217ENST00000598558 APOHP02749 345 aaPredicted RBP10.71□□□□□ -0.69
SHKBP1-217ENST00000598558 SLC25A4P12235 298 aa10.71□□□□□ -0.69
SHKBP1-217ENST00000598558 GP9P14770 177 aa10.71□□□□□ -0.69
SHKBP1-217ENST00000598558 ELLP55199 621 aaPredicted RBP10.71□□□□□ -0.69
SHKBP1-217ENST00000598558 ATP5IP56385 69 aaPredicted RBP10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms