RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 MED28Q9H204 178 aa7.92□□□□□ -1.14
VRK3-214ENST00000598553 MRPL27Q9P0M9 148 aaKnown RBP7.92□□□□□ -1.14
VRK3-214ENST00000598553 TRAV25A0A0B4J276 109 aa7.91□□□□□ -1.14
VRK3-214ENST00000598553 NDUFA4O00483 81 aa7.91□□□□□ -1.14
VRK3-214ENST00000598553 APOHP02749 345 aaPredicted RBP7.91□□□□□ -1.14
VRK3-214ENST00000598553 TCRBP04435 133 aa7.91□□□□□ -1.14
VRK3-214ENST00000598553 CTSDP07339 412 aaPredicted RBP7.91□□□□□ -1.14
VRK3-214ENST00000598553 H2AFB2P0C5Z0 115 aa7.91□□□□□ -1.14
VRK3-214ENST00000598553 OR5AC1P0C628 307 aa7.91□□□□□ -1.14
VRK3-214ENST00000598553 TBPP20226 339 aa7.91□□□□□ -1.14
VRK3-214ENST00000598553 FAUP35544 74 aaKnown RBP7.91□□□□□ -1.14
VRK3-214ENST00000598553 KLF9Q13886 244 aaPredicted RBP7.91□□□□□ -1.14
VRK3-214ENST00000598553 SCGB2B2Q4G0G5 96 aa7.91□□□□□ -1.14
VRK3-214ENST00000598553 LILRB2Q8N423 598 aa7.91□□□□□ -1.14
VRK3-214ENST00000598553 ARRDC1Q8N5I2 433 aa7.91□□□□□ -1.14
VRK3-214ENST00000598553 ZNF114Q8NC26 417 aa7.91□□□□□ -1.14
VRK3-214ENST00000598553 OR4C16Q8NGL9 310 aa7.91□□□□□ -1.14
VRK3-214ENST00000598553 OR1P1Q8NH06 330 aa7.91□□□□□ -1.14
VRK3-214ENST00000598553 OR4A16Q8NH70 328 aa7.91□□□□□ -1.14
VRK3-214ENST00000598553 PINX1Q96BK5 328 aaKnown RBP7.91□□□□□ -1.14
VRK3-214ENST00000598553 RNF2Q99496 336 aa7.91□□□□□ -1.14
VRK3-214ENST00000598553 OVOL2Q9BRP0 275 aa7.91□□□□□ -1.14
VRK3-214ENST00000598553 RTBDNQ9BSG5 229 aaPredicted RBP7.91□□□□□ -1.14
VRK3-214ENST00000598553 FNDC4Q9H6D8 234 aaPredicted RBP7.91□□□□□ -1.14
VRK3-214ENST00000598553 DAZ1Q9NQZ3 744 aaKnown RBP7.91□□□□□ -1.14
VRK3-214ENST00000598553 IGKV3-7A0A075B6H7 116 aa7.9□□□□□ -1.14
VRK3-214ENST00000598553 C3orf85A0A1B0GTC6 90 aa7.9□□□□□ -1.14
VRK3-214ENST00000598553 NXPH3O95157 252 aa7.9□□□□□ -1.14
VRK3-214ENST00000598553 RAB3DO95716 219 aa7.9□□□□□ -1.14
VRK3-214ENST00000598553 RNASE2P10153 161 aaKnown RBP7.9□□□□□ -1.14
VRK3-214ENST00000598553 BTCP35070 178 aa7.9□□□□□ -1.14
VRK3-214ENST00000598553 HSPE1P61604 102 aaKnown RBP7.9□□□□□ -1.14
VRK3-214ENST00000598553 SSBP1Q04837 148 aaKnown RBP7.9□□□□□ -1.14
VRK3-214ENST00000598553 ANKRD55Q3KP44 614 aa7.9□□□□□ -1.14
VRK3-214ENST00000598553 STEAP1BQ6NZ63 245 aa7.9□□□□□ -1.14
VRK3-214ENST00000598553 RBPMS2Q6ZRY4 209 aaKnown RBP7.9□□□□□ -1.14
VRK3-214ENST00000598553 TMEM229BQ8NBD8 167 aa7.9□□□□□ -1.14
VRK3-214ENST00000598553 TMEM230Q96A57 120 aa7.9□□□□□ -1.14
VRK3-214ENST00000598553 GGTLC1Q9BX51 225 aa7.9□□□□□ -1.14
VRK3-214ENST00000598553 C5orf66Q9H5L9 145 aa7.9□□□□□ -1.14
VRK3-214ENST00000598553 ZFAND3Q9H8U3 227 aa7.9□□□□□ -1.14
VRK3-214ENST00000598553 MCUBQ9NWR8 336 aa7.9□□□□□ -1.14
VRK3-214ENST00000598553 IGHV3-66A0A0C4DH42 116 aa7.89□□□□□ -1.15
VRK3-214ENST00000598553 IGHV7-4-1A0A0J9YVY3 117 aa7.89□□□□□ -1.15
VRK3-214ENST00000598553 A0A1B0GU03 582 aa7.89□□□□□ -1.15
VRK3-214ENST00000598553 CHEK1O14757 476 aa7.89□□□□□ -1.15
VRK3-214ENST00000598553 ANXA3P12429 323 aa7.89□□□□□ -1.15
VRK3-214ENST00000598553 RPL35AP18077 110 aaKnown RBP7.89□□□□□ -1.15
VRK3-214ENST00000598553 UCP1P25874 307 aa7.89□□□□□ -1.15
VRK3-214ENST00000598553 AKR1C2P52895 323 aa7.89□□□□□ -1.15
VRK3-214ENST00000598553 TAS2R19P59542 299 aa7.89□□□□□ -1.15
VRK3-214ENST00000598553 MEF2DQ14814 521 aa7.89□□□□□ -1.15
VRK3-214ENST00000598553 PVRIGQ6DKI7 326 aa7.89□□□□□ -1.15
VRK3-214ENST00000598553 APRG1Q8IVJ8 170 aa7.89□□□□□ -1.15
VRK3-214ENST00000598553 FAM24BQ8N5W8 94 aa7.89□□□□□ -1.15
VRK3-214ENST00000598553 TMEM170AQ8WVE7 144 aa7.89□□□□□ -1.15
VRK3-214ENST00000598553 SPAG8Q99932 426 aaPredicted RBP7.89□□□□□ -1.15
VRK3-214ENST00000598553 NUDT15Q9NV35 164 aa7.89□□□□□ -1.15
VRK3-214ENST00000598553 SMPXQ9UHP9 88 aa7.89□□□□□ -1.15
VRK3-214ENST00000598553 LOC102724200A0A096LPH7 203 aaPredicted RBP7.88□□□□□ -1.15
VRK3-214ENST00000598553 ANKRD20A5PA0PJZ0 165 aa7.88□□□□□ -1.15
VRK3-214ENST00000598553 K7EMT4 169 aa7.88□□□□□ -1.15
VRK3-214ENST00000598553 TSPAN4O14817 238 aa7.88□□□□□ -1.15
VRK3-214ENST00000598553 NUPL2O15504 423 aaKnown RBP7.88□□□□□ -1.15
VRK3-214ENST00000598553 FCGR2BP31994 310 aaPredicted RBP7.88□□□□□ -1.15
VRK3-214ENST00000598553 TFPI2P48307 235 aa7.88□□□□□ -1.15
VRK3-214ENST00000598553 RELQ04864 619 aaPredicted RBP7.88□□□□□ -1.15
VRK3-214ENST00000598553 DEFB135Q30KP9 77 aa7.88□□□□□ -1.15
VRK3-214ENST00000598553 FAM90A2PQ658T7 463 aa7.88□□□□□ -1.15
VRK3-214ENST00000598553 TOMM20LQ6UXN7 152 aa7.88□□□□□ -1.15
VRK3-214ENST00000598553 ZNF767PQ75MW2 155 aa7.88□□□□□ -1.15
VRK3-214ENST00000598553 GBGT1Q8N5D6 347 aa7.88□□□□□ -1.15
VRK3-214ENST00000598553 TERB2Q8NHR7 220 aa7.88□□□□□ -1.15
VRK3-214ENST00000598553 GLYATL2Q8WU03 294 aa7.88□□□□□ -1.15
VRK3-214ENST00000598553 ST8SIA2Q92186 375 aa7.88□□□□□ -1.15
VRK3-214ENST00000598553 GPR146Q96CH1 333 aa7.88□□□□□ -1.15
VRK3-214ENST00000598553 OR10C1Q96KK4 312 aa7.88□□□□□ -1.15
VRK3-214ENST00000598553 RHPN1-AS1Q9BWJ2 59 aa7.88□□□□□ -1.15
VRK3-214ENST00000598553 GPN1Q9HCN4 374 aaPredicted RBP7.88□□□□□ -1.15
VRK3-214ENST00000598553 DNAH1Q9P2D7 4330 aa7.88□□□□□ -1.15
VRK3-214ENST00000598553 TRAV6A0A075B6T7 132 aa7.87□□□□□ -1.15
VRK3-214ENST00000598553 C15orf62A8K5M9 175 aa7.87□□□□□ -1.15
VRK3-214ENST00000598553 ATG12O94817 140 aa7.87□□□□□ -1.15
VRK3-214ENST00000598553 IL5P05113 134 aa7.87□□□□□ -1.15
VRK3-214ENST00000598553 C4BPBP20851 252 aa7.87□□□□□ -1.15
VRK3-214ENST00000598553 MFAP4P55083 255 aa7.87□□□□□ -1.15
VRK3-214ENST00000598553 FCN2Q15485 313 aa7.87□□□□□ -1.15
VRK3-214ENST00000598553 SELENOHQ8IZQ5 122 aaKnown RBP7.87□□□□□ -1.15
VRK3-214ENST00000598553 SLC35G3Q8N808 338 aa7.87□□□□□ -1.15
VRK3-214ENST00000598553 CCDC71LQ8N9Z2 235 aa7.87□□□□□ -1.15
VRK3-214ENST00000598553 OR51S1Q8NGJ8 323 aa7.87□□□□□ -1.15
VRK3-214ENST00000598553 TXN2Q99757 166 aa7.87□□□□□ -1.15
VRK3-214ENST00000598553 C20orf85Q9H1P6 137 aa7.87□□□□□ -1.15
VRK3-214ENST00000598553 NAA60Q9H7X0 242 aa7.87□□□□□ -1.15
VRK3-214ENST00000598553 GPR132Q9UNW8 380 aa7.87□□□□□ -1.15
VRK3-214ENST00000598553 ALMS1Q8TCU4 4167 aa7.87□□□□□ -1.15
VRK3-214ENST00000598553 HYDINQ4G0P3 5121 aa7.86□□□□□ -1.15
VRK3-214ENST00000598553 A0A0J9YWU9 116 aa7.86□□□□□ -1.15
VRK3-214ENST00000598553 OR4C46A6NHA9 309 aa7.86□□□□□ -1.15
VRK3-214ENST00000598553 SNRPGP15A8MWD9 76 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms