RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 OR51S1Q8NGJ8 323 aa9.2□□□□□ -0.94
TRIM28-212ENST00000597995 TMEM222Q9H0R3 208 aa9.2□□□□□ -0.94
TRIM28-212ENST00000597995 SMPXQ9UHP9 88 aa9.2□□□□□ -0.94
TRIM28-212ENST00000597995 TEX13DA0A0J9YY54 714 aaPredicted RBP9.19□□□□□ -0.94
TRIM28-212ENST00000597995 MPTX1A8MV57 137 aa9.19□□□□□ -0.94
TRIM28-212ENST00000597995 DISC1C4P0D8 188 aa9.19□□□□□ -0.94
TRIM28-212ENST00000597995 IFNA4P05014 189 aa9.19□□□□□ -0.94
TRIM28-212ENST00000597995 RNASE2P10153 161 aaKnown RBP9.19□□□□□ -0.94
TRIM28-212ENST00000597995 MFAP4P55083 255 aa9.19□□□□□ -0.94
TRIM28-212ENST00000597995 ERHP84090 104 aaKnown RBP9.19□□□□□ -0.94
TRIM28-212ENST00000597995 SURF2Q15527 256 aaPredicted RBP9.19□□□□□ -0.94
TRIM28-212ENST00000597995 AARDQ4LEZ3 155 aa9.19□□□□□ -0.94
TRIM28-212ENST00000597995 APRG1Q8IVJ8 170 aa9.19□□□□□ -0.94
TRIM28-212ENST00000597995 SELENOHQ8IZQ5 122 aaKnown RBP9.19□□□□□ -0.94
TRIM28-212ENST00000597995 C11orf45Q8TAV5 145 aa9.19□□□□□ -0.94
TRIM28-212ENST00000597995 TMEM230Q96A57 120 aa9.19□□□□□ -0.94
TRIM28-212ENST00000597995 RARRES2Q99969 163 aa9.19□□□□□ -0.94
TRIM28-212ENST00000597995 C11orf68Q9H3H3 251 aaKnown RBP9.19□□□□□ -0.94
TRIM28-212ENST00000597995 NAA60Q9H7X0 242 aa9.19□□□□□ -0.94
TRIM28-212ENST00000597995 MRPL36Q9P0J6 103 aaKnown RBP9.19□□□□□ -0.94
TRIM28-212ENST00000597995 RABL2AQ9UBK7 228 aaPredicted RBP9.19□□□□□ -0.94
TRIM28-212ENST00000597995 RABL2BQ9UNT1 228 aa9.19□□□□□ -0.94
TRIM28-212ENST00000597995 CRYM-AS1A6NIL9 109 aa9.18□□□□□ -0.94
TRIM28-212ENST00000597995 CHEK1O14757 476 aa9.18□□□□□ -0.94
TRIM28-212ENST00000597995 B3GALNT1O75752 331 aa9.18□□□□□ -0.94
TRIM28-212ENST00000597995 IFNA17P01571 189 aa9.18□□□□□ -0.94
TRIM28-212ENST00000597995 RELQ04864 619 aaPredicted RBP9.18□□□□□ -0.94
TRIM28-212ENST00000597995 RBMS2Q15434 407 aaKnown RBP9.18□□□□□ -0.94
TRIM28-212ENST00000597995 MLANAQ16655 118 aa9.18□□□□□ -0.94
TRIM28-212ENST00000597995 TMEM116Q8NCL8 245 aa9.18□□□□□ -0.94
TRIM28-212ENST00000597995 MCFD2Q8NI22 146 aa9.18□□□□□ -0.94
TRIM28-212ENST00000597995 PINX1Q96BK5 328 aaKnown RBP9.18□□□□□ -0.94
TRIM28-212ENST00000597995 GPR146Q96CH1 333 aa9.18□□□□□ -0.94
TRIM28-212ENST00000597995 OR10C1Q96KK4 312 aa9.18□□□□□ -0.94
TRIM28-212ENST00000597995 RNF2Q99496 336 aa9.18□□□□□ -0.94
TRIM28-212ENST00000597995 TXN2Q99757 166 aa9.18□□□□□ -0.94
TRIM28-212ENST00000597995 RHPN1-AS1Q9BWJ2 59 aa9.18□□□□□ -0.94
TRIM28-212ENST00000597995 FNDC4Q9H6D8 234 aaPredicted RBP9.18□□□□□ -0.94
TRIM28-212ENST00000597995 PRR13Q9NZ81 148 aa9.18□□□□□ -0.94
TRIM28-212ENST00000597995 C14orf166Q9Y224 244 aaKnown RBP9.18□□□□□ -0.94
TRIM28-212ENST00000597995 IGHV3-49A0A0A0MS15 119 aa9.17□□□□□ -0.94
TRIM28-212ENST00000597995 IGHV7-4-1A0A0J9YVY3 117 aa9.17□□□□□ -0.94
TRIM28-212ENST00000597995 FABP12A6NFH5 140 aa9.17□□□□□ -0.94
TRIM28-212ENST00000597995 CCDC160A6NGH7 325 aa9.17□□□□□ -0.94
TRIM28-212ENST00000597995 NUPL2O15504 423 aaKnown RBP9.17□□□□□ -0.94
TRIM28-212ENST00000597995 ATG12O94817 140 aa9.17□□□□□ -0.94
TRIM28-212ENST00000597995 NANOS2P60321 138 aaKnown RBP9.17□□□□□ -0.94
TRIM28-212ENST00000597995 BSXQ3C1V8 233 aa9.17□□□□□ -0.94
TRIM28-212ENST00000597995 FAM90A2PQ658T7 463 aa9.17□□□□□ -0.94
TRIM28-212ENST00000597995 SLC35G3Q8N808 338 aa9.17□□□□□ -0.94
TRIM28-212ENST00000597995 OR11H2Q8NH07 326 aa9.17□□□□□ -0.94
TRIM28-212ENST00000597995 RRNAD1Q96FB5 475 aaKnown RBP9.17□□□□□ -0.94
TRIM28-212ENST00000597995 PRRT1Q99946 306 aa9.17□□□□□ -0.94
TRIM28-212ENST00000597995 RBM38Q9H0Z9 239 aaKnown RBP9.17□□□□□ -0.94
TRIM28-212ENST00000597995 RSL24D1Q9UHA3 163 aaKnown RBP9.17□□□□□ -0.94
TRIM28-212ENST00000597995 V9GYH0 126 aa9.17□□□□□ -0.94
TRIM28-212ENST00000597995 GNG7O60262 68 aa9.16□□□□□ -0.94
TRIM28-212ENST00000597995 TMEM50AO95807 157 aa9.16□□□□□ -0.94
TRIM28-212ENST00000597995 CD5P06127 495 aa9.16□□□□□ -0.94
TRIM28-212ENST00000597995 SNCAP37840 140 aa9.16□□□□□ -0.94
TRIM28-212ENST00000597995 SUPT4H1P63272 117 aaKnown RBP9.16□□□□□ -0.94
TRIM28-212ENST00000597995 DHODHQ02127 395 aa9.16□□□□□ -0.94
TRIM28-212ENST00000597995 KLF9Q13886 244 aaPredicted RBP9.16□□□□□ -0.94
TRIM28-212ENST00000597995 TMEM187Q14656 261 aa9.16□□□□□ -0.94
TRIM28-212ENST00000597995 ZNF124Q15973 351 aa9.16□□□□□ -0.94
TRIM28-212ENST00000597995 TMEM268Q5VZI3 342 aa9.16□□□□□ -0.94
TRIM28-212ENST00000597995 TOMM20LQ6UXN7 152 aa9.16□□□□□ -0.94
TRIM28-212ENST00000597995 FAM219AQ8IW50 185 aa9.16□□□□□ -0.94
TRIM28-212ENST00000597995 LILRB2Q8N423 598 aa9.16□□□□□ -0.94
TRIM28-212ENST00000597995 C2CD4CQ8TF44 421 aa9.16□□□□□ -0.94
TRIM28-212ENST00000597995 RBPMSQ93062 196 aaKnown RBP9.16□□□□□ -0.94
TRIM28-212ENST00000597995 TRIM63Q969Q1 353 aa9.16□□□□□ -0.94
TRIM28-212ENST00000597995 CACNG5Q9UF02 275 aa9.16□□□□□ -0.94
TRIM28-212ENST00000597995 FBXL17Q9UF56 701 aa9.16□□□□□ -0.94
TRIM28-212ENST00000597995 TMEM56-RWDD3S4R434 201 aa9.16□□□□□ -0.94
TRIM28-212ENST00000597995 VPS13DQ5THJ4 4388 aa9.16□□□□□ -0.94
TRIM28-212ENST00000597995 IGHV3OR16-13A0A075B7E8 117 aa9.15□□□□□ -0.94
TRIM28-212ENST00000597995 TRAV14DV4A0A0A6YYC5 116 aa9.15□□□□□ -0.94
TRIM28-212ENST00000597995 IGHV3-74A0A0B4J1X5 117 aa9.15□□□□□ -0.94
TRIM28-212ENST00000597995 A0A1B0GU03 582 aa9.15□□□□□ -0.94
TRIM28-212ENST00000597995 YIF1AO95070 293 aa9.15□□□□□ -0.94
TRIM28-212ENST00000597995 APOHP02749 345 aaPredicted RBP9.15□□□□□ -0.94
TRIM28-212ENST00000597995 HOXA1P49639 335 aaPredicted RBP9.15□□□□□ -0.94
TRIM28-212ENST00000597995 SPCS3P61009 180 aa9.15□□□□□ -0.94
TRIM28-212ENST00000597995 PAFAH1B2P68402 229 aa9.15□□□□□ -0.94
TRIM28-212ENST00000597995 PRR20EP86478 221 aa9.15□□□□□ -0.94
TRIM28-212ENST00000597995 PRR20CP86479 221 aa9.15□□□□□ -0.94
TRIM28-212ENST00000597995 PRR20DP86480 221 aa9.15□□□□□ -0.94
TRIM28-212ENST00000597995 PRR20BP86481 221 aa9.15□□□□□ -0.94
TRIM28-212ENST00000597995 PRR20AP86496 221 aa9.15□□□□□ -0.94
TRIM28-212ENST00000597995 ZNF79Q15937 498 aa9.15□□□□□ -0.94
TRIM28-212ENST00000597995 OR52E5Q8NH55 327 aa9.15□□□□□ -0.94
TRIM28-212ENST00000597995 RNASE11Q8TAA1 199 aaKnown RBP9.15□□□□□ -0.94
TRIM28-212ENST00000597995 TMEM170AQ8WVE7 144 aa9.15□□□□□ -0.94
TRIM28-212ENST00000597995 PDCD10Q9BUL8 212 aa9.15□□□□□ -0.94
TRIM28-212ENST00000597995 ZFAND3Q9H8U3 227 aa9.15□□□□□ -0.94
TRIM28-212ENST00000597995 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.15□□□□□ -0.94
TRIM28-212ENST00000597995 DFFBO76075 338 aa9.14□□□□□ -0.95
TRIM28-212ENST00000597995 NPBWR1P48145 328 aa9.14□□□□□ -0.95
TRIM28-212ENST00000597995 TFPI2P48307 235 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms