RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 DUXBA0A1W2PPF3 345 aa13.31□□□□□ -0.28
SHKBP1-204ENST00000594862 OR4C46A6NHA9 309 aa13.31□□□□□ -0.28
SHKBP1-204ENST00000594862 YIF1AO95070 293 aa13.31□□□□□ -0.28
SHKBP1-204ENST00000594862 OPRK1P41145 380 aa13.31□□□□□ -0.28
SHKBP1-204ENST00000594862 ZNF79Q15937 498 aa13.31□□□□□ -0.28
SHKBP1-204ENST00000594862 LINC00322Q6ZN03 302 aaPredicted RBP13.31□□□□□ -0.28
SHKBP1-204ENST00000594862 Q6ZRM9 215 aa13.31□□□□□ -0.28
SHKBP1-204ENST00000594862 GPR146Q96CH1 333 aa13.31□□□□□ -0.28
SHKBP1-204ENST00000594862 HIPK2Q9H2X6 1198 aa13.31□□□□□ -0.28
SHKBP1-204ENST00000594862 STAB2Q8WWQ8 2551 aa13.3□□□□□ -0.28
SHKBP1-204ENST00000594862 CEBPZOSA8MTT3 80 aa13.3□□□□□ -0.28
SHKBP1-204ENST00000594862 INPP1P49441 399 aa13.3□□□□□ -0.28
SHKBP1-204ENST00000594862 CCR6P51684 374 aa13.3□□□□□ -0.28
SHKBP1-204ENST00000594862 TMEM128Q5BJH2 165 aa13.3□□□□□ -0.28
SHKBP1-204ENST00000594862 ZNF600Q6ZNG1 722 aa13.3□□□□□ -0.28
SHKBP1-204ENST00000594862 DEFB125Q8N687 156 aa13.3□□□□□ -0.28
SHKBP1-204ENST00000594862 TMEM116Q8NCL8 245 aa13.3□□□□□ -0.28
SHKBP1-204ENST00000594862 SLC24A4Q8NFF2 622 aa13.3□□□□□ -0.28
SHKBP1-204ENST00000594862 RNASEH2CQ8TDP1 164 aaKnown RBP13.3□□□□□ -0.28
SHKBP1-204ENST00000594862 CITED4Q96RK1 184 aa13.3□□□□□ -0.28
SHKBP1-204ENST00000594862 NDUFA13Q9P0J0 144 aa13.3□□□□□ -0.28
SHKBP1-204ENST00000594862 SMPXQ9UHP9 88 aa13.3□□□□□ -0.28
SHKBP1-204ENST00000594862 TRAV30A0A087WSZ9 112 aa13.29□□□□□ -0.28
SHKBP1-204ENST00000594862 TRAV14DV4A0A0A6YYC5 116 aa13.29□□□□□ -0.28
SHKBP1-204ENST00000594862 IGHV7-4-1A0A0J9YVY3 117 aa13.29□□□□□ -0.28
SHKBP1-204ENST00000594862 SLC25A4P12235 298 aa13.29□□□□□ -0.28
SHKBP1-204ENST00000594862 SMCO1Q147U7 214 aa13.29□□□□□ -0.28
SHKBP1-204ENST00000594862 C2orf83Q53S99 150 aa13.29□□□□□ -0.28
SHKBP1-204ENST00000594862 ETFRF1Q6IPR1 90 aa13.29□□□□□ -0.28
SHKBP1-204ENST00000594862 TMED4Q7Z7H5 227 aa13.29□□□□□ -0.28
SHKBP1-204ENST00000594862 OR4X1Q8NH49 305 aa13.29□□□□□ -0.28
SHKBP1-204ENST00000594862 FAM110AQ9BQ89 295 aa13.29□□□□□ -0.28
SHKBP1-204ENST00000594862 NAP1L6A6NFF2 107 aa13.28□□□□□ -0.28
SHKBP1-204ENST00000594862 CLN5O75503 358 aa13.28□□□□□ -0.28
SHKBP1-204ENST00000594862 IGHV3-48P01763 117 aa13.28□□□□□ -0.28
SHKBP1-204ENST00000594862 CMC4P56277 68 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-204ENST00000594862 ATP5IP56385 69 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-204ENST00000594862 SUPT4H1P63272 117 aaKnown RBP13.28□□□□□ -0.28
SHKBP1-204ENST00000594862 NMSQ5H8A3 153 aa13.28□□□□□ -0.28
SHKBP1-204ENST00000594862 TRIQKQ629K1 86 aa13.28□□□□□ -0.28
SHKBP1-204ENST00000594862 MUC7Q8TAX7 377 aa13.28□□□□□ -0.28
SHKBP1-204ENST00000594862 TMEM231Q9H6L2 316 aa13.28□□□□□ -0.28
SHKBP1-204ENST00000594862 A0A1B0GU03 582 aa13.27□□□□□ -0.29
SHKBP1-204ENST00000594862 TMEM50AO95807 157 aa13.27□□□□□ -0.29
SHKBP1-204ENST00000594862 RBMS2Q15434 407 aaKnown RBP13.27□□□□□ -0.29
SHKBP1-204ENST00000594862 RHPN1-AS1Q9BWJ2 59 aa13.27□□□□□ -0.29
SHKBP1-204ENST00000594862 GGTLC1Q9BX51 225 aa13.27□□□□□ -0.29
SHKBP1-204ENST00000594862 SRRQ9GZT4 340 aa13.27□□□□□ -0.29
SHKBP1-204ENST00000594862 HSPB7Q9UBY9 170 aa13.27□□□□□ -0.29
SHKBP1-204ENST00000594862 IGHV3OR16-8A0A075B7F1 116 aa13.26□□□□□ -0.29
SHKBP1-204ENST00000594862 RBMY1BA6NDE4 496 aaKnown RBP13.26□□□□□ -0.29
SHKBP1-204ENST00000594862 RBMY1EA6NEQ0 496 aaKnown RBP13.26□□□□□ -0.29
SHKBP1-204ENST00000594862 CHEK1O14757 476 aa13.26□□□□□ -0.29
SHKBP1-204ENST00000594862 ZNF207O43670 478 aaKnown RBP13.26□□□□□ -0.29
SHKBP1-204ENST00000594862 RBMY1DP0C7P1 496 aaKnown RBP13.26□□□□□ -0.29
SHKBP1-204ENST00000594862 VAMP1P23763 118 aa13.26□□□□□ -0.29
SHKBP1-204ENST00000594862 NPY1RP25929 384 aa13.26□□□□□ -0.29
SHKBP1-204ENST00000594862 UBE2MP61081 183 aaKnown RBP13.26□□□□□ -0.29
SHKBP1-204ENST00000594862 TNFRSF9Q07011 255 aa13.26□□□□□ -0.29
SHKBP1-204ENST00000594862 TOMM20LQ6UXN7 152 aa13.26□□□□□ -0.29
SHKBP1-204ENST00000594862 LRTM2Q8N967 370 aa13.26□□□□□ -0.29
SHKBP1-204ENST00000594862 WFDC10AQ9H1F0 79 aa13.26□□□□□ -0.29
SHKBP1-204ENST00000594862 PUS1Q9Y606 427 aaKnown RBP eCLIP13.26□□□□□ -0.29
SHKBP1-204ENST00000594862 SELENOKQ9Y6D0 94 aa13.26□□□□□ -0.29
SHKBP1-204ENST00000594862 U3KQ87 197 aa13.26□□□□□ -0.29
SHKBP1-204ENST00000594862 LOC102724200A0A096LPH7 203 aaPredicted RBP13.25□□□□□ -0.29
SHKBP1-204ENST00000594862 A0A1W2PS18 150 aa13.25□□□□□ -0.29
SHKBP1-204ENST00000594862 SLC25A6P12236 298 aa13.25□□□□□ -0.29
SHKBP1-204ENST00000594862 PAFAH1B2P68402 229 aa13.25□□□□□ -0.29
SHKBP1-204ENST00000594862 LYZL2Q7Z4W2 148 aa13.25□□□□□ -0.29
SHKBP1-204ENST00000594862 CENPSQ8N2Z9 138 aa13.25□□□□□ -0.29
SHKBP1-204ENST00000594862 OR1S2Q8NGQ3 325 aa13.25□□□□□ -0.29
SHKBP1-204ENST00000594862 OR1S1Q8NH92 325 aa13.25□□□□□ -0.29
SHKBP1-204ENST00000594862 NARS2Q96I59 477 aaKnown RBP13.25□□□□□ -0.29
SHKBP1-204ENST00000594862 ZNF414Q96IQ9 312 aa13.25□□□□□ -0.29
SHKBP1-204ENST00000594862 FNDC4Q9H6D8 234 aaPredicted RBP13.25□□□□□ -0.29
SHKBP1-204ENST00000594862 CENPXA8MT69 81 aa13.24□□□□□ -0.29
SHKBP1-204ENST00000594862 APOC4P55056 127 aa13.24□□□□□ -0.29
SHKBP1-204ENST00000594862 DTD1Q8TEA8 209 aa13.24□□□□□ -0.29
SHKBP1-204ENST00000594862 METTL26Q96S19 204 aa13.24□□□□□ -0.29
SHKBP1-204ENST00000594862 RNF2Q99496 336 aa13.24□□□□□ -0.29
SHKBP1-204ENST00000594862 ZFAND3Q9H8U3 227 aa13.24□□□□□ -0.29
SHKBP1-204ENST00000594862 TMED3Q9Y3Q3 217 aa13.24□□□□□ -0.29
SHKBP1-204ENST00000594862 FAM90A26D6RGX4 464 aa13.23□□□□□ -0.29
SHKBP1-204ENST00000594862 IFNA10P01566 189 aa13.23□□□□□ -0.29
SHKBP1-204ENST00000594862 LYL1P12980 280 aa13.23□□□□□ -0.29
SHKBP1-204ENST00000594862 NPPCP23582 126 aa13.23□□□□□ -0.29
SHKBP1-204ENST00000594862 C7orf50Q9BRJ6 194 aaKnown RBP13.23□□□□□ -0.29
SHKBP1-204ENST00000594862 VSIRQ9H7M9 311 aa13.23□□□□□ -0.29
SHKBP1-204ENST00000594862 EDA2RQ9HAV5 297 aa13.23□□□□□ -0.29
SHKBP1-204ENST00000594862 PRR13Q9NZ81 148 aa13.23□□□□□ -0.29
SHKBP1-204ENST00000594862 TRAV2A0A0B4J234 112 aa13.22□□□□□ -0.29
SHKBP1-204ENST00000594862 SFT2D2O95562 160 aa13.22□□□□□ -0.29
SHKBP1-204ENST00000594862 RND2P52198 227 aa13.22□□□□□ -0.29
SHKBP1-204ENST00000594862 PRSS54Q6PEW0 395 aa13.22□□□□□ -0.29
SHKBP1-204ENST00000594862 IL17DQ8TAD2 202 aa13.22□□□□□ -0.29
SHKBP1-204ENST00000594862 GRAMD2BQ96HH9 432 aa13.22□□□□□ -0.29
SHKBP1-204ENST00000594862 UBE2CO00762 179 aa13.21□□□□□ -0.29
SHKBP1-204ENST00000594862 MED6O75586 246 aa13.21□□□□□ -0.29
SHKBP1-204ENST00000594862 NXPH3O95157 252 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms