RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 HEYLQ9NQ87 328 aaPredicted RBP11.41□□□□□ -0.58
TRIM28-203ENST00000593582 V9GYH0 126 aa11.41□□□□□ -0.58
TRIM28-203ENST00000593582 OR4C46A6NHA9 309 aa11.4□□□□□ -0.58
TRIM28-203ENST00000593582 ZNF701M0R085 212 aaPredicted RBP11.4□□□□□ -0.58
TRIM28-203ENST00000593582 SCGB2A1O75556 95 aa11.4□□□□□ -0.58
TRIM28-203ENST00000593582 ANXA3P12429 323 aa11.4□□□□□ -0.58
TRIM28-203ENST00000593582 BMI1P35226 326 aa11.4□□□□□ -0.58
TRIM28-203ENST00000593582 HTR2BP41595 481 aa11.4□□□□□ -0.58
TRIM28-203ENST00000593582 KLF9Q13886 244 aaPredicted RBP11.4□□□□□ -0.58
TRIM28-203ENST00000593582 TMEM187Q14656 261 aa11.4□□□□□ -0.58
TRIM28-203ENST00000593582 BSXQ3C1V8 233 aa11.4□□□□□ -0.58
TRIM28-203ENST00000593582 TRIM63Q969Q1 353 aa11.4□□□□□ -0.58
TRIM28-203ENST00000593582 ZNF414Q96IQ9 312 aa11.4□□□□□ -0.58
TRIM28-203ENST00000593582 RNF2Q99496 336 aa11.4□□□□□ -0.58
TRIM28-203ENST00000593582 RHPN1-AS1Q9BWJ2 59 aa11.4□□□□□ -0.58
TRIM28-203ENST00000593582 GGTLC1Q9BX51 225 aa11.4□□□□□ -0.58
TRIM28-203ENST00000593582 RBM38Q9H0Z9 239 aaKnown RBP11.4□□□□□ -0.58
TRIM28-203ENST00000593582 RETNQ9HD89 108 aa11.4□□□□□ -0.58
TRIM28-203ENST00000593582 LOC102724200A0A096LPH7 203 aaPredicted RBP11.39□□□□□ -0.59
TRIM28-203ENST00000593582 IGHV3-49A0A0A0MS15 119 aa11.39□□□□□ -0.59
TRIM28-203ENST00000593582 CEBPZOSA8MTT3 80 aa11.39□□□□□ -0.59
TRIM28-203ENST00000593582 CHEK1O14757 476 aa11.39□□□□□ -0.59
TRIM28-203ENST00000593582 TMEM50AO95807 157 aa11.39□□□□□ -0.59
TRIM28-203ENST00000593582 SULT1A3P0DMM9 295 aa11.39□□□□□ -0.59
TRIM28-203ENST00000593582 SULT1A4P0DMN0 295 aa11.39□□□□□ -0.59
TRIM28-203ENST00000593582 SRPXP78539 464 aa11.39□□□□□ -0.59
TRIM28-203ENST00000593582 TOMM20LQ6UXN7 152 aa11.39□□□□□ -0.59
TRIM28-203ENST00000593582 ZNF600Q6ZNG1 722 aa11.39□□□□□ -0.59
TRIM28-203ENST00000593582 OR4X1Q8NH49 305 aa11.39□□□□□ -0.59
TRIM28-203ENST00000593582 PRR13Q9NZ81 148 aa11.39□□□□□ -0.59
TRIM28-203ENST00000593582 A0A0B4J2A0 478 aa11.38□□□□□ -0.59
TRIM28-203ENST00000593582 PIGBOS1A0A0B4J2F0 54 aa11.38□□□□□ -0.59
TRIM28-203ENST00000593582 RPS10-NUDT3A0A1W2PQS6 291 aa11.38□□□□□ -0.59
TRIM28-203ENST00000593582 SUPT4H1P63272 117 aaKnown RBP11.38□□□□□ -0.59
TRIM28-203ENST00000593582 ZNF79Q15937 498 aa11.38□□□□□ -0.59
TRIM28-203ENST00000593582 SPANXN2Q5MJ10 180 aa11.38□□□□□ -0.59
TRIM28-203ENST00000593582 CCDC190Q86UF4 302 aa11.38□□□□□ -0.59
TRIM28-203ENST00000593582 LGI3Q8N145 548 aa11.38□□□□□ -0.59
TRIM28-203ENST00000593582 DEDD2Q8WXF8 326 aa11.38□□□□□ -0.59
TRIM28-203ENST00000593582 FAM110AQ9BQ89 295 aa11.38□□□□□ -0.59
TRIM28-203ENST00000593582 FNDC4Q9H6D8 234 aaPredicted RBP11.38□□□□□ -0.59
TRIM28-203ENST00000593582 UBQLN2Q9UHD9 624 aa11.38□□□□□ -0.59
TRIM28-203ENST00000593582 SHPKQ9UHJ6 478 aa11.38□□□□□ -0.59
TRIM28-203ENST00000593582 PUS1Q9Y606 427 aaKnown RBP eCLIP11.38□□□□□ -0.59
TRIM28-203ENST00000593582 CLN5O75503 358 aa11.37□□□□□ -0.59
TRIM28-203ENST00000593582 NXPH3O95157 252 aa11.37□□□□□ -0.59
TRIM28-203ENST00000593582 CD5P06127 495 aa11.37□□□□□ -0.59
TRIM28-203ENST00000593582 CCR6P51684 374 aa11.37□□□□□ -0.59
TRIM28-203ENST00000593582 C2orf83Q53S99 150 aa11.37□□□□□ -0.59
TRIM28-203ENST00000593582 NMSQ5H8A3 153 aa11.37□□□□□ -0.59
TRIM28-203ENST00000593582 LYZL2Q7Z4W2 148 aa11.37□□□□□ -0.59
TRIM28-203ENST00000593582 TMED4Q7Z7H5 227 aa11.37□□□□□ -0.59
TRIM28-203ENST00000593582 NOXA1Q86UR1 476 aa11.37□□□□□ -0.59
TRIM28-203ENST00000593582 SLC24A4Q8NFF2 622 aa11.37□□□□□ -0.59
TRIM28-203ENST00000593582 RNASEH2CQ8TDP1 164 aaKnown RBP11.37□□□□□ -0.59
TRIM28-203ENST00000593582 IGHV3OR16-13A0A075B7E8 117 aa11.36□□□□□ -0.59
TRIM28-203ENST00000593582 TRAV30A0A087WSZ9 112 aa11.36□□□□□ -0.59
TRIM28-203ENST00000593582 IGHV3-74A0A0B4J1X5 117 aa11.36□□□□□ -0.59
TRIM28-203ENST00000593582 APOC4P55056 127 aa11.36□□□□□ -0.59
TRIM28-203ENST00000593582 PAFAH1B2P68402 229 aa11.36□□□□□ -0.59
TRIM28-203ENST00000593582 SMCO1Q147U7 214 aa11.36□□□□□ -0.59
TRIM28-203ENST00000593582 MLANAQ16655 118 aa11.36□□□□□ -0.59
TRIM28-203ENST00000593582 ODF3L2Q3SX64 289 aa11.36□□□□□ -0.59
TRIM28-203ENST00000593582 TMEM128Q5BJH2 165 aa11.36□□□□□ -0.59
TRIM28-203ENST00000593582 SLC25A21Q9BQT8 299 aaPredicted RBP11.36□□□□□ -0.59
TRIM28-203ENST00000593582 ZFAND3Q9H8U3 227 aa11.36□□□□□ -0.59
TRIM28-203ENST00000593582 MRPL36Q9P0J6 103 aaKnown RBP11.36□□□□□ -0.59
TRIM28-203ENST00000593582 CSMD3Q7Z407 3707 aa11.35□□□□□ -0.59
TRIM28-203ENST00000593582 IGKV3-7A0A075B6H7 116 aa11.35□□□□□ -0.59
TRIM28-203ENST00000593582 A0A1B0GU03 582 aa11.35□□□□□ -0.59
TRIM28-203ENST00000593582 SLC25A4P12235 298 aa11.35□□□□□ -0.59
TRIM28-203ENST00000593582 NPY1RP25929 384 aa11.35□□□□□ -0.59
TRIM28-203ENST00000593582 TFPI2P48307 235 aa11.35□□□□□ -0.59
TRIM28-203ENST00000593582 CMC4P56277 68 aaPredicted RBP11.35□□□□□ -0.59
TRIM28-203ENST00000593582 TNFRSF9Q07011 255 aa11.35□□□□□ -0.59
TRIM28-203ENST00000593582 ZFAND6Q6FIF0 208 aa11.35□□□□□ -0.59
TRIM28-203ENST00000593582 ETFRF1Q6IPR1 90 aa11.35□□□□□ -0.59
TRIM28-203ENST00000593582 TCF24Q7RTU0 167 aa11.35□□□□□ -0.59
TRIM28-203ENST00000593582 ST8SIA2Q92186 375 aa11.35□□□□□ -0.59
TRIM28-203ENST00000593582 TMEM231Q9H6L2 316 aa11.35□□□□□ -0.59
TRIM28-203ENST00000593582 HSPB7Q9UBY9 170 aa11.35□□□□□ -0.59
TRIM28-203ENST00000593582 IFNA10P01566 189 aa11.34□□□□□ -0.59
TRIM28-203ENST00000593582 IGKV1-17P01599 117 aa11.34□□□□□ -0.59
TRIM28-203ENST00000593582 NPPCP23582 126 aa11.34□□□□□ -0.59
TRIM28-203ENST00000593582 VAMP1P23763 118 aa11.34□□□□□ -0.59
TRIM28-203ENST00000593582 INPP1P49441 399 aa11.34□□□□□ -0.59
TRIM28-203ENST00000593582 RPL11P62913 178 aaKnown RBP11.34□□□□□ -0.59
TRIM28-203ENST00000593582 FAM90A2PQ658T7 463 aa11.34□□□□□ -0.59
TRIM28-203ENST00000593582 PRSS54Q6PEW0 395 aa11.34□□□□□ -0.59
TRIM28-203ENST00000593582 OR1S1Q8NH92 325 aa11.34□□□□□ -0.59
TRIM28-203ENST00000593582 DTD1Q8TEA8 209 aa11.34□□□□□ -0.59
TRIM28-203ENST00000593582 METTL26Q96S19 204 aa11.34□□□□□ -0.59
TRIM28-203ENST00000593582 VSIRQ9H7M9 311 aa11.34□□□□□ -0.59
TRIM28-203ENST00000593582 U3KQ87 197 aa11.34□□□□□ -0.59
TRIM28-203ENST00000593582 RYR3Q15413 4870 aa11.34□□□□□ -0.59
TRIM28-203ENST00000593582 IGHV3-66A0A0C4DH42 116 aa11.33□□□□□ -0.6
TRIM28-203ENST00000593582 DUXBA0A1W2PPF3 345 aa11.33□□□□□ -0.6
TRIM28-203ENST00000593582 A0A1W2PS18 150 aa11.33□□□□□ -0.6
TRIM28-203ENST00000593582 DFFBO76075 338 aa11.33□□□□□ -0.6
TRIM28-203ENST00000593582 APOHP02749 345 aaPredicted RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms