RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 DYNC2LI1Q8TCX1 351 aa15.12■□□□□ 0.01
SHMT1-209ENST00000582653 GLYATL2Q8WU03 294 aa15.12■□□□□ 0.01
SHMT1-209ENST00000582653 TMEM222Q9H0R3 208 aa15.12■□□□□ 0.01
SHMT1-209ENST00000582653 C14orf166Q9Y224 244 aaKnown RBP15.12■□□□□ 0.01
SHMT1-209ENST00000582653 PUS1Q9Y606 427 aaKnown RBP eCLIP15.12■□□□□ 0.01
SHMT1-209ENST00000582653 TEX13DA0A0J9YY54 714 aaPredicted RBP15.11■□□□□ 0.01
SHMT1-209ENST00000582653 A0A1B0GU03 582 aa15.11■□□□□ 0.01
SHMT1-209ENST00000582653 DISC1C4P0D8 188 aa15.11■□□□□ 0.01
SHMT1-209ENST00000582653 ATF4P18848 351 aaPredicted RBP15.11■□□□□ 0.01
SHMT1-209ENST00000582653 SUB1P53999 127 aaKnown RBP eCLIP15.11■□□□□ 0.01
SHMT1-209ENST00000582653 TCF24Q7RTU0 167 aa15.11■□□□□ 0.01
SHMT1-209ENST00000582653 ST8SIA2Q92186 375 aa15.11■□□□□ 0.01
SHMT1-209ENST00000582653 FNDC4Q9H6D8 234 aaPredicted RBP15.11■□□□□ 0.01
SHMT1-209ENST00000582653 NAA60Q9H7X0 242 aa15.11■□□□□ 0.01
SHMT1-209ENST00000582653 ZFAND3Q9H8U3 227 aa15.11■□□□□ 0.01
SHMT1-209ENST00000582653 MAP6D1Q9H9H5 199 aa15.11■□□□□ 0.01
SHMT1-209ENST00000582653 ENY2Q9NPA8 101 aa15.11■□□□□ 0.01
SHMT1-209ENST00000582653 ALMS1Q8TCU4 4167 aa15.11■□□□□ 0.01
SHMT1-209ENST00000582653 B3GALNT1O75752 331 aa15.1■□□□□ 0.01
SHMT1-209ENST00000582653 AKAIN1P0CW23 69 aa15.1■□□□□ 0.01
SHMT1-209ENST00000582653 ZNF600Q6ZNG1 722 aa15.1■□□□□ 0.01
SHMT1-209ENST00000582653 SELENOHQ8IZQ5 122 aaKnown RBP15.1■□□□□ 0.01
SHMT1-209ENST00000582653 RAB2BQ8WUD1 216 aa15.1■□□□□ 0.01
SHMT1-209ENST00000582653 GINS3Q9BRX5 216 aa15.1■□□□□ 0.01
SHMT1-209ENST00000582653 GPR132Q9UNW8 380 aa15.1■□□□□ 0.01
SHMT1-209ENST00000582653 BIRC6Q9NR09 4857 aa15.09■□□□□ 0.01
SHMT1-209ENST00000582653 CXorf65A6NEN9 183 aa15.09■□□□□ 0.01
SHMT1-209ENST00000582653 CORTO00230 105 aa15.09■□□□□ 0.01
SHMT1-209ENST00000582653 CTDSPLO15194 276 aa15.09■□□□□ 0.01
SHMT1-209ENST00000582653 OPRK1P41145 380 aa15.09■□□□□ 0.01
SHMT1-209ENST00000582653 TMBIM6P55061 237 aa15.09■□□□□ 0.01
SHMT1-209ENST00000582653 OR51S1Q8NGJ8 323 aa15.09■□□□□ 0.01
SHMT1-209ENST00000582653 RBPMSQ93062 196 aaKnown RBP15.09■□□□□ 0.01
SHMT1-209ENST00000582653 GPR146Q96CH1 333 aa15.09■□□□□ 0.01
SHMT1-209ENST00000582653 C6orf62Q9GZU0 229 aaPredicted RBP15.09■□□□□ 0.01
SHMT1-209ENST00000582653 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.09■□□□□ 0.01
SHMT1-209ENST00000582653 CCDC59Q9P031 241 aaKnown RBP15.09■□□□□ 0.01
SHMT1-209ENST00000582653 NUPR2A6NF83 97 aa15.08■□□□□ 0
SHMT1-209ENST00000582653 CRYM-AS1A6NIL9 109 aa15.08■□□□□ 0
SHMT1-209ENST00000582653 DFFBO76075 338 aa15.08■□□□□ 0
SHMT1-209ENST00000582653 SPCS3P61009 180 aa15.08■□□□□ 0
SHMT1-209ENST00000582653 SURF2Q15527 256 aaPredicted RBP15.08■□□□□ 0
SHMT1-209ENST00000582653 BSXQ3C1V8 233 aa15.08■□□□□ 0
SHMT1-209ENST00000582653 TMEM268Q5VZI3 342 aa15.08■□□□□ 0
SHMT1-209ENST00000582653 FAM219AQ8IW50 185 aa15.08■□□□□ 0
SHMT1-209ENST00000582653 LINC00476Q8WZB0 136 aa15.08■□□□□ 0
SHMT1-209ENST00000582653 VSIRQ9H7M9 311 aa15.08■□□□□ 0
SHMT1-209ENST00000582653 PRR13Q9NZ81 148 aa15.08■□□□□ 0
SHMT1-209ENST00000582653 CLN5O75503 358 aa15.07■□□□□ 0
SHMT1-209ENST00000582653 DHODHQ02127 395 aa15.07■□□□□ 0
SHMT1-209ENST00000582653 PMS2P11Q13670 270 aa15.07■□□□□ 0
SHMT1-209ENST00000582653 AARDQ4LEZ3 155 aa15.07■□□□□ 0
SHMT1-209ENST00000582653 CEMP1Q6PRD7 247 aaPredicted RBP15.07■□□□□ 0
SHMT1-209ENST00000582653 CSTL1Q9H114 145 aa15.07■□□□□ 0
SHMT1-209ENST00000582653 CACNG5Q9UF02 275 aa15.07■□□□□ 0
SHMT1-209ENST00000582653 ANKRD20A5PA0PJZ0 165 aa15.06■□□□□ 0
SHMT1-209ENST00000582653 NXPH3O95157 252 aa15.06■□□□□ 0
SHMT1-209ENST00000582653 CD5P06127 495 aa15.06■□□□□ 0
SHMT1-209ENST00000582653 RPL5P46777 297 aaKnown RBP15.06■□□□□ 0
SHMT1-209ENST00000582653 RPL11P62913 178 aaKnown RBP15.06■□□□□ 0
SHMT1-209ENST00000582653 PAFAH1B2P68402 229 aa15.06■□□□□ 0
SHMT1-209ENST00000582653 OR4X1Q8NH49 305 aa15.06■□□□□ 0
SHMT1-209ENST00000582653 OR52E5Q8NH55 327 aa15.06■□□□□ 0
SHMT1-209ENST00000582653 PRRT1Q99946 306 aa15.06■□□□□ 0
SHMT1-209ENST00000582653 SLIRPQ9GZT3 109 aaKnown RBP15.06■□□□□ 0
SHMT1-209ENST00000582653 MS4A6AQ9H2W1 248 aa15.06■□□□□ 0
SHMT1-209ENST00000582653 HEYLQ9NQ87 328 aaPredicted RBP15.06■□□□□ 0
SHMT1-209ENST00000582653 DNASE2O00115 360 aaPredicted RBP15.05■□□□□ -0
SHMT1-209ENST00000582653 GSTZ1O43708 216 aaPredicted RBP15.05■□□□□ -0
SHMT1-209ENST00000582653 NPPCP23582 126 aa15.05■□□□□ -0
SHMT1-209ENST00000582653 TNFSF8P32971 234 aa15.05■□□□□ -0
SHMT1-209ENST00000582653 TIGITQ495A1 244 aa15.05■□□□□ -0
SHMT1-209ENST00000582653 FAM24BQ8N5W8 94 aa15.05■□□□□ -0
SHMT1-209ENST00000582653 TMEM217Q8N7C4 229 aa15.05■□□□□ -0
SHMT1-209ENST00000582653 TMEM230Q96A57 120 aa15.05■□□□□ -0
SHMT1-209ENST00000582653 BCL7BQ9BQE9 202 aa15.05■□□□□ -0
SHMT1-209ENST00000582653 RABL2AQ9UBK7 228 aaPredicted RBP15.05■□□□□ -0
SHMT1-209ENST00000582653 RABL2BQ9UNT1 228 aa15.05■□□□□ -0
SHMT1-209ENST00000582653 CEBPZOSA8MTT3 80 aa15.04■□□□□ -0
SHMT1-209ENST00000582653 H3BMQ9 156 aa15.04■□□□□ -0
SHMT1-209ENST00000582653 LY6G6CO95867 125 aa15.04■□□□□ -0
SHMT1-209ENST00000582653 HTR2BP41595 481 aa15.04■□□□□ -0
SHMT1-209ENST00000582653 LEMD1Q68G75 181 aa15.04■□□□□ -0
SHMT1-209ENST00000582653 SOSTQ9BQB4 213 aa15.04■□□□□ -0
SHMT1-209ENST00000582653 RSL24D1Q9UHA3 163 aaKnown RBP15.04■□□□□ -0
SHMT1-209ENST00000582653 KLK5Q9Y337 293 aaPredicted RBP15.04■□□□□ -0
SHMT1-209ENST00000582653 TMEM56-RWDD3S4R434 201 aa15.04■□□□□ -0
SHMT1-209ENST00000582653 FABP12A6NFH5 140 aa15.03■□□□□ -0
SHMT1-209ENST00000582653 MPTX1A8MV57 137 aa15.03■□□□□ -0
SHMT1-209ENST00000582653 IGKV1-17P01599 117 aa15.03■□□□□ -0
SHMT1-209ENST00000582653 DEFB131AP59861 70 aa15.03■□□□□ -0
SHMT1-209ENST00000582653 TMEM187Q14656 261 aa15.03■□□□□ -0
SHMT1-209ENST00000582653 TMEM170AQ8WVE7 144 aa15.03■□□□□ -0
SHMT1-209ENST00000582653 MCUBQ9NWR8 336 aa15.03■□□□□ -0
SHMT1-209ENST00000582653 C2orf83Q53S99 150 aa15.02■□□□□ -0
SHMT1-209ENST00000582653 GATAD1Q8WUU5 269 aa15.02■□□□□ -0
SHMT1-209ENST00000582653 METTL26Q96S19 204 aa15.02■□□□□ -0
SHMT1-209ENST00000582653 RABAC1Q9UI14 185 aa15.02■□□□□ -0
SHMT1-209ENST00000582653 SCP2D1Q9UJQ7 156 aa15.02■□□□□ -0
SHMT1-209ENST00000582653 KCNIP3Q9Y2W7 256 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms