RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 BMPR1BO00238 502 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 MPC2O95563 127 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 TRBV12-3P01733 135 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 RLN2P04090 185 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 IFNA4P05014 189 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 OR8U8P0C7N1 319 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 SLC25A4P12235 298 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 OPRK1P41145 380 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 VAMP2P63027 116 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 TMEM116Q8NCL8 245 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 OR4X1Q8NH49 305 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 S4R3C0 116 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 PKD1L1Q8TDX9 2849 aa13.98□□□□□ -0.17
CCDC40-213ENST00000574933 ANKRD34BA5PLL1 514 aa13.98□□□□□ -0.17
CCDC40-213ENST00000574933 IGHV3-23P01764 117 aa13.98□□□□□ -0.17
CCDC40-213ENST00000574933 CLEC3BP05452 202 aa13.98□□□□□ -0.17
CCDC40-213ENST00000574933 ZP3P21754 424 aa13.98□□□□□ -0.17
CCDC40-213ENST00000574933 MLANAQ16655 118 aa13.98□□□□□ -0.17
CCDC40-213ENST00000574933 PRR31Q5SQ13 230 aa13.98□□□□□ -0.17
CCDC40-213ENST00000574933 PRSS54Q6PEW0 395 aa13.98□□□□□ -0.17
CCDC40-213ENST00000574933 SPSB3Q6PJ21 355 aa13.98□□□□□ -0.17
CCDC40-213ENST00000574933 CLEC19AQ6UXS0 136 aa13.98□□□□□ -0.17
CCDC40-213ENST00000574933 DPF1Q92782 380 aa13.98□□□□□ -0.17
CCDC40-213ENST00000574933 BSCL2Q96G97 398 aaPredicted RBP13.98□□□□□ -0.17
CCDC40-213ENST00000574933 RNF126Q9BV68 326 aa13.98□□□□□ -0.17
CCDC40-213ENST00000574933 LYRM2Q9NU23 88 aaPredicted RBP13.98□□□□□ -0.17
CCDC40-213ENST00000574933 E5RGE8 158 aa13.97□□□□□ -0.17
CCDC40-213ENST00000574933 SCAF4O95104 1147 aaKnown RBP13.97□□□□□ -0.17
CCDC40-213ENST00000574933 PET100P0DJ07 73 aa13.97□□□□□ -0.17
CCDC40-213ENST00000574933 LYL1P12980 280 aa13.97□□□□□ -0.17
CCDC40-213ENST00000574933 NPBWR1P48145 328 aa13.97□□□□□ -0.17
CCDC40-213ENST00000574933 RAP2BP61225 183 aa13.97□□□□□ -0.17
CCDC40-213ENST00000574933 SLC16A13Q7RTY0 426 aa13.97□□□□□ -0.17
CCDC40-213ENST00000574933 LINC00482Q8N8I6 264 aa13.97□□□□□ -0.17
CCDC40-213ENST00000574933 DUX3Q96PT4 197 aa13.97□□□□□ -0.17
CCDC40-213ENST00000574933 MRPL36Q9P0J6 103 aaKnown RBP13.97□□□□□ -0.17
CCDC40-213ENST00000574933 TGOLN2O43493 480 aa13.96□□□□□ -0.17
CCDC40-213ENST00000574933 GGCTO75223 188 aaKnown RBP13.96□□□□□ -0.17
CCDC40-213ENST00000574933 CLN5O75503 358 aa13.96□□□□□ -0.17
CCDC40-213ENST00000574933 PF4P02776 101 aa13.96□□□□□ -0.17
CCDC40-213ENST00000574933 CTSGP08311 255 aa13.96□□□□□ -0.17
CCDC40-213ENST00000574933 HOXD3P31249 432 aaPredicted RBP13.96□□□□□ -0.17
CCDC40-213ENST00000574933 GPR183P32249 361 aa13.96□□□□□ -0.17
CCDC40-213ENST00000574933 ARL3P36405 182 aa13.96□□□□□ -0.17
CCDC40-213ENST00000574933 P2RY1P47900 373 aa13.96□□□□□ -0.17
CCDC40-213ENST00000574933 LRRC37A5PQ49AS3 106 aa13.96□□□□□ -0.17
CCDC40-213ENST00000574933 ACSM6Q6P461 480 aa13.96□□□□□ -0.17
CCDC40-213ENST00000574933 WFDC9Q8NEX5 89 aa13.96□□□□□ -0.17
CCDC40-213ENST00000574933 OR5AC2Q9NZP5 309 aa13.96□□□□□ -0.17
CCDC40-213ENST00000574933 MGAM2Q2M2H8 2515 aa13.96□□□□□ -0.18
CCDC40-213ENST00000574933 OR2T8A6NH00 312 aa13.95□□□□□ -0.18
CCDC40-213ENST00000574933 PPP5D1E7EU14 171 aa13.95□□□□□ -0.18
CCDC40-213ENST00000574933 FNDC10F2Z333 226 aa13.95□□□□□ -0.18
CCDC40-213ENST00000574933 IGHV3-48P01763 117 aa13.95□□□□□ -0.18
CCDC40-213ENST00000574933 METTL15P1P0C7V9 234 aa13.95□□□□□ -0.18
CCDC40-213ENST00000574933 ADMP35318 185 aa13.95□□□□□ -0.18
CCDC40-213ENST00000574933 KLF5Q13887 457 aaPredicted RBP13.95□□□□□ -0.18
CCDC40-213ENST00000574933 Q56UQ5 140 aa13.95□□□□□ -0.18
CCDC40-213ENST00000574933 HAPLN4Q86UW8 402 aa13.95□□□□□ -0.18
CCDC40-213ENST00000574933 GPHB5Q86YW7 130 aa13.95□□□□□ -0.18
CCDC40-213ENST00000574933 TMEM252Q8N6L7 170 aa13.95□□□□□ -0.18
CCDC40-213ENST00000574933 CHAC2Q8WUX2 184 aa13.95□□□□□ -0.18
CCDC40-213ENST00000574933 PAIP2BQ9ULR5 123 aaKnown RBP13.95□□□□□ -0.18
CCDC40-213ENST00000574933 TRAV30A0A087WSZ9 112 aa13.94□□□□□ -0.18
CCDC40-213ENST00000574933 TRAV14DV4A0A0A6YYC5 116 aa13.94□□□□□ -0.18
CCDC40-213ENST00000574933 FAM24AA6NFZ4 105 aa13.94□□□□□ -0.18
CCDC40-213ENST00000574933 GNG7O60262 68 aa13.94□□□□□ -0.18
CCDC40-213ENST00000574933 CCNKO75909 580 aa13.94□□□□□ -0.18
CCDC40-213ENST00000574933 CAV2P51636 162 aa13.94□□□□□ -0.18
CCDC40-213ENST00000574933 DLK1P80370 383 aa13.94□□□□□ -0.18
CCDC40-213ENST00000574933 FGL1Q08830 312 aa13.94□□□□□ -0.18
CCDC40-213ENST00000574933 GAMTQ14353 236 aa13.94□□□□□ -0.18
CCDC40-213ENST00000574933 RPEL1Q2QD12 228 aa13.94□□□□□ -0.18
CCDC40-213ENST00000574933 ZNF414Q96IQ9 312 aa13.94□□□□□ -0.18
CCDC40-213ENST00000574933 CHRDL1Q9BU40 450 aa13.94□□□□□ -0.18
CCDC40-213ENST00000574933 GGACTQ9BVM4 153 aa13.94□□□□□ -0.18
CCDC40-213ENST00000574933 MBD2Q9UBB5 411 aa13.94□□□□□ -0.18
CCDC40-213ENST00000574933 IGSF23A1L1A6 192 aa13.93□□□□□ -0.18
CCDC40-213ENST00000574933 SULT1A1P50225 295 aa13.93□□□□□ -0.18
CCDC40-213ENST00000574933 BCAP31P51572 246 aa13.93□□□□□ -0.18
CCDC40-213ENST00000574933 RND2P52198 227 aa13.93□□□□□ -0.18
CCDC40-213ENST00000574933 SLURP1P55000 103 aa13.93□□□□□ -0.18
CCDC40-213ENST00000574933 ARL16Q0P5N6 197 aa13.93□□□□□ -0.18
CCDC40-213ENST00000574933 UBAC2Q8NBM4 344 aa13.93□□□□□ -0.18
CCDC40-213ENST00000574933 OR10P1Q8NGE3 313 aa13.93□□□□□ -0.18
CCDC40-213ENST00000574933 DLX4Q92988 240 aaPredicted RBP13.93□□□□□ -0.18
CCDC40-213ENST00000574933 SLC35E1Q96K37 410 aa13.93□□□□□ -0.18
CCDC40-213ENST00000574933 LGALS9O00182 355 aa13.92□□□□□ -0.18
CCDC40-213ENST00000574933 NUPL2O15504 423 aaKnown RBP13.92□□□□□ -0.18
CCDC40-213ENST00000574933 IGKV1-17P01599 117 aa13.92□□□□□ -0.18
CCDC40-213ENST00000574933 IGLC1P0CG04 106 aa13.92□□□□□ -0.18
CCDC40-213ENST00000574933 OR8G2PQ6IF36 304 aa13.92□□□□□ -0.18
CCDC40-213ENST00000574933 ACOT7LQ6ZUV0 252 aa13.92□□□□□ -0.18
CCDC40-213ENST00000574933 C1QL4Q86Z23 238 aa13.92□□□□□ -0.18
CCDC40-213ENST00000574933 OR1S2Q8NGQ3 325 aa13.92□□□□□ -0.18
CCDC40-213ENST00000574933 THAP6Q8TBB0 222 aa13.92□□□□□ -0.18
CCDC40-213ENST00000574933 DCUN1D4Q92564 292 aa13.92□□□□□ -0.18
CCDC40-213ENST00000574933 NPIPB3Q92617 1050 aa13.92□□□□□ -0.18
CCDC40-213ENST00000574933 SLC25A31Q9H0C2 315 aa13.92□□□□□ -0.18
CCDC40-213ENST00000574933 SORL1Q92673 2214 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms