RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 CEMP1Q6PRD7 247 aaPredicted RBP13.28□□□□□ -0.28
CHD3-214ENST00000572579 TMEM170AQ8WVE7 144 aa13.28□□□□□ -0.28
CHD3-214ENST00000572579 CSTL1Q9H114 145 aa13.28□□□□□ -0.28
CHD3-214ENST00000572579 MS4A6AQ9H2W1 248 aa13.28□□□□□ -0.28
CHD3-214ENST00000572579 COPZ2Q9P299 210 aa13.28□□□□□ -0.28
CHD3-214ENST00000572579 OR5AC1P0C628 307 aa13.27□□□□□ -0.29
CHD3-214ENST00000572579 ATF4P18848 351 aaPredicted RBP13.27□□□□□ -0.29
CHD3-214ENST00000572579 ZNF600Q6ZNG1 722 aa13.27□□□□□ -0.29
CHD3-214ENST00000572579 SELENOHQ8IZQ5 122 aaKnown RBP13.27□□□□□ -0.29
CHD3-214ENST00000572579 SLC35G3Q8N808 338 aa13.27□□□□□ -0.29
CHD3-214ENST00000572579 ZFAND1Q8TCF1 268 aa13.27□□□□□ -0.29
CHD3-214ENST00000572579 GPR146Q96CH1 333 aa13.27□□□□□ -0.29
CHD3-214ENST00000572579 TMEM222Q9H0R3 208 aa13.27□□□□□ -0.29
CHD3-214ENST00000572579 CLN5O75503 358 aa13.26□□□□□ -0.29
CHD3-214ENST00000572579 GIG44P09565 113 aaPredicted RBP13.26□□□□□ -0.29
CHD3-214ENST00000572579 RPL5P46777 297 aaKnown RBP13.26□□□□□ -0.29
CHD3-214ENST00000572579 OR4X1Q8NH49 305 aa13.26□□□□□ -0.29
CHD3-214ENST00000572579 TEX13DA0A0J9YY54 714 aaPredicted RBP13.25□□□□□ -0.29
CHD3-214ENST00000572579 HOXA1P49639 335 aaPredicted RBP13.25□□□□□ -0.29
CHD3-214ENST00000572579 MEF2DQ14814 521 aa13.25□□□□□ -0.29
CHD3-214ENST00000572579 TIGITQ495A1 244 aa13.25□□□□□ -0.29
CHD3-214ENST00000572579 LEMD1Q68G75 181 aa13.25□□□□□ -0.29
CHD3-214ENST00000572579 CCDC71LQ8N9Z2 235 aa13.25□□□□□ -0.29
CHD3-214ENST00000572579 OR4C16Q8NGL9 310 aa13.25□□□□□ -0.29
CHD3-214ENST00000572579 SMIM4Q8WVI0 70 aa13.25□□□□□ -0.29
CHD3-214ENST00000572579 NAA60Q9H7X0 242 aa13.25□□□□□ -0.29
CHD3-214ENST00000572579 PRR13Q9NZ81 148 aa13.25□□□□□ -0.29
CHD3-214ENST00000572579 GPR132Q9UNW8 380 aa13.25□□□□□ -0.29
CHD3-214ENST00000572579 MPTX1A8MV57 137 aa13.24□□□□□ -0.29
CHD3-214ENST00000572579 RGS5O15539 181 aa13.24□□□□□ -0.29
CHD3-214ENST00000572579 CRYBB3P26998 211 aa13.24□□□□□ -0.29
CHD3-214ENST00000572579 CMC4P56277 68 aaPredicted RBP13.24□□□□□ -0.29
CHD3-214ENST00000572579 DEFB131AP59861 70 aa13.24□□□□□ -0.29
CHD3-214ENST00000572579 OR52E5Q8NH55 327 aa13.24□□□□□ -0.29
CHD3-214ENST00000572579 C15orf40Q8WUR7 153 aa13.24□□□□□ -0.29
CHD3-214ENST00000572579 GINS3Q9BRX5 216 aa13.24□□□□□ -0.29
CHD3-214ENST00000572579 MRPS26Q9BYN8 205 aaKnown RBP13.24□□□□□ -0.29
CHD3-214ENST00000572579 NXPH3O95157 252 aa13.23□□□□□ -0.29
CHD3-214ENST00000572579 LY6G6CO95867 125 aa13.23□□□□□ -0.29
CHD3-214ENST00000572579 SPCS3P61009 180 aa13.23□□□□□ -0.29
CHD3-214ENST00000572579 SSBP1Q04837 148 aaKnown RBP13.23□□□□□ -0.29
CHD3-214ENST00000572579 GPR141Q7Z602 305 aa13.23□□□□□ -0.29
CHD3-214ENST00000572579 DYNC2LI1Q8TCX1 351 aa13.23□□□□□ -0.29
CHD3-214ENST00000572579 TMEM230Q96A57 120 aa13.23□□□□□ -0.29
CHD3-214ENST00000572579 RRNAD1Q96FB5 475 aaKnown RBP13.23□□□□□ -0.29
CHD3-214ENST00000572579 SOSTQ9BQB4 213 aa13.23□□□□□ -0.29
CHD3-214ENST00000572579 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.23□□□□□ -0.29
CHD3-214ENST00000572579 CACNG5Q9UF02 275 aa13.23□□□□□ -0.29
CHD3-214ENST00000572579 U3KQE9 123 aa13.23□□□□□ -0.29
CHD3-214ENST00000572579 NUPR2A6NF83 97 aa13.22□□□□□ -0.29
CHD3-214ENST00000572579 CRYM-AS1A6NIL9 109 aa13.22□□□□□ -0.29
CHD3-214ENST00000572579 CTDSPLO15194 276 aa13.22□□□□□ -0.29
CHD3-214ENST00000572579 ATG12O94817 140 aa13.22□□□□□ -0.29
CHD3-214ENST00000572579 NPPCP23582 126 aa13.22□□□□□ -0.29
CHD3-214ENST00000572579 OPRK1P41145 380 aa13.22□□□□□ -0.29
CHD3-214ENST00000572579 SUB1P53999 127 aaKnown RBP eCLIP13.22□□□□□ -0.29
CHD3-214ENST00000572579 RBMS2Q15434 407 aaKnown RBP13.22□□□□□ -0.29
CHD3-214ENST00000572579 PRSS54Q6PEW0 395 aa13.22□□□□□ -0.29
CHD3-214ENST00000572579 OR11H2Q8NH07 326 aa13.22□□□□□ -0.29
CHD3-214ENST00000572579 PHLDA1Q8WV24 401 aaPredicted RBP13.22□□□□□ -0.29
CHD3-214ENST00000572579 RARRES2Q99969 163 aa13.22□□□□□ -0.29
CHD3-214ENST00000572579 PDCD10Q9BUL8 212 aa13.22□□□□□ -0.29
CHD3-214ENST00000572579 TMEM56-RWDD3S4R434 201 aa13.22□□□□□ -0.29
CHD3-214ENST00000572579 TRAV2A0A0B4J234 112 aa13.21□□□□□ -0.29
CHD3-214ENST00000572579 K7EQG2 157 aa13.21□□□□□ -0.29
CHD3-214ENST00000572579 CORTO00230 105 aa13.21□□□□□ -0.29
CHD3-214ENST00000572579 DEFB4AO15263 64 aa13.21□□□□□ -0.29
CHD3-214ENST00000572579 B3GALNT1O75752 331 aa13.21□□□□□ -0.29
CHD3-214ENST00000572579 IGLC1P0CG04 106 aa13.21□□□□□ -0.29
CHD3-214ENST00000572579 NANOS2P60321 138 aaKnown RBP13.21□□□□□ -0.29
CHD3-214ENST00000572579 PAFAH1B2P68402 229 aa13.21□□□□□ -0.29
CHD3-214ENST00000572579 SURF2Q15527 256 aaPredicted RBP13.21□□□□□ -0.29
CHD3-214ENST00000572579 CLVS1Q8IUQ0 354 aaPredicted RBP13.21□□□□□ -0.29
CHD3-214ENST00000572579 FAM219AQ8IW50 185 aa13.21□□□□□ -0.29
CHD3-214ENST00000572579 OR51S1Q8NGJ8 323 aa13.21□□□□□ -0.29
CHD3-214ENST00000572579 DCANP1Q8TF63 244 aa13.21□□□□□ -0.29
CHD3-214ENST00000572579 GATAD1Q8WUU5 269 aa13.21□□□□□ -0.29
CHD3-214ENST00000572579 RBPMSQ93062 196 aaKnown RBP13.21□□□□□ -0.29
CHD3-214ENST00000572579 DNAH6Q9C0G6 4158 aa13.21□□□□□ -0.3
CHD3-214ENST00000572579 DNASE2O00115 360 aaPredicted RBP13.2□□□□□ -0.3
CHD3-214ENST00000572579 CA1P00915 261 aaPredicted RBP13.2□□□□□ -0.3
CHD3-214ENST00000572579 CD5P06127 495 aa13.2□□□□□ -0.3
CHD3-214ENST00000572579 P2RY1P47900 373 aa13.2□□□□□ -0.3
CHD3-214ENST00000572579 RPL11P62913 178 aaKnown RBP13.2□□□□□ -0.3
CHD3-214ENST00000572579 MRPS10P82664 201 aaKnown RBP13.2□□□□□ -0.3
CHD3-214ENST00000572579 TMEM187Q14656 261 aa13.2□□□□□ -0.3
CHD3-214ENST00000572579 C2orf83Q53S99 150 aa13.2□□□□□ -0.3
CHD3-214ENST00000572579 TMEM268Q5VZI3 342 aa13.2□□□□□ -0.3
CHD3-214ENST00000572579 DIRAS2Q96HU8 199 aa13.2□□□□□ -0.3
CHD3-214ENST00000572579 SLIRPQ9GZT3 109 aaKnown RBP13.2□□□□□ -0.3
CHD3-214ENST00000572579 C6orf62Q9GZU0 229 aaPredicted RBP13.2□□□□□ -0.3
CHD3-214ENST00000572579 ENY2Q9NPA8 101 aa13.2□□□□□ -0.3
CHD3-214ENST00000572579 C14orf166Q9Y224 244 aaKnown RBP13.2□□□□□ -0.3
CHD3-214ENST00000572579 ANKRD20A5PA0PJZ0 165 aa13.19□□□□□ -0.3
CHD3-214ENST00000572579 KNCNA6PVL3 124 aa13.19□□□□□ -0.3
CHD3-214ENST00000572579 DISC1C4P0D8 188 aa13.19□□□□□ -0.3
CHD3-214ENST00000572579 AKAIN1P0CW23 69 aa13.19□□□□□ -0.3
CHD3-214ENST00000572579 HTR2BP41595 481 aa13.19□□□□□ -0.3
CHD3-214ENST00000572579 DHODHQ02127 395 aa13.19□□□□□ -0.3
CHD3-214ENST00000572579 NMSQ5H8A3 153 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms