RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 OR10AC1Q8NH08 325 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 RPS4Y2Q8TD47 263 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 TNFAIP8L1Q8WVP5 186 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 MAFIPQ8WZ33 124 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 SMIM12Q96EX1 92 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 PGLYRP4Q96LB8 373 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 CNBD2Q96M20 576 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 SPACA5Q96QH8 159 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 ZNF2Q9BSG1 426 aaPredicted RBP4.67□□□□□ -1.66
VPS53-212ENST00000572259 C19orf24Q9BVV8 132 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 PECRQ9BY49 303 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 CCDC90BQ9GZT6 254 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 ARV1Q9H2C2 271 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 HMG20AQ9NP66 347 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 CALYQ9NYX4 217 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 VSIG4Q9Y279 399 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 FBN1P35555 2871 aaKnown RBP4.67□□□□□ -1.66
VPS53-212ENST00000572259 CUBNO60494 3623 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 TRGV10A0A0A0MS01 117 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 PNMA8CA0A1B0GUJ8 204 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 ANGPTL7O43827 346 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 MRPS14O60783 128 aaKnown RBP4.66□□□□□ -1.66
VPS53-212ENST00000572259 UPK1BO75841 260 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 RBP4P02753 201 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 ZNF728P0DKX0 622 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 CT45A10P0DMU9 189 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 RCC1P18754 421 aaPredicted RBP4.66□□□□□ -1.66
VPS53-212ENST00000572259 ERP29P30040 261 aaKnown RBP4.66□□□□□ -1.66
VPS53-212ENST00000572259 KIR2DS2P43631 304 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 FGF8P55075 233 aaPredicted RBP4.66□□□□□ -1.66
VPS53-212ENST00000572259 ERVFC1-1P60608 527 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 NUTF2P61970 127 aaKnown RBP4.66□□□□□ -1.66
VPS53-212ENST00000572259 UBA52P62987 128 aaKnown RBP4.66□□□□□ -1.66
VPS53-212ENST00000572259 SLC35A2P78381 396 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 RPL36AP83881 106 aaKnown RBP4.66□□□□□ -1.66
VPS53-212ENST00000572259 MXD1Q05195 221 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 EDDM3AQ14507 147 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 DEFB112Q30KQ8 113 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 KRTAP24-1Q3LI83 254 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 GLT8D1Q68CQ7 371 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 XAF1Q6GPH4 301 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 ELP2Q6IA86 826 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 BRD3OSQ6XYD6 125 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 FAM231DQ6ZW35 169 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 TRAPPC6BQ86SZ2 158 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 LINC00596Q86U02 117 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 LRRTM1Q86UE6 522 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 HOGA1Q86XE5 327 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 OR4M1Q8NGD0 313 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 OR51A2Q8NGJ7 313 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 Q8WTZ3 238 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 MRPS24Q96EL2 167 aaKnown RBP4.66□□□□□ -1.66
VPS53-212ENST00000572259 SFRP2Q96HF1 295 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 ZNF714Q96N38 554 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 DUX3Q96PT4 197 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 ZNF184Q99676 751 aaPredicted RBP4.66□□□□□ -1.66
VPS53-212ENST00000572259 YTHDF1Q9BYJ9 559 aaKnown RBP4.66□□□□□ -1.66
VPS53-212ENST00000572259 DUSP21Q9H596 190 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 RBFOX1Q9NWB1 397 aaKnown RBP4.66□□□□□ -1.66
VPS53-212ENST00000572259 TAS2R4Q9NYW5 299 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 ANXA10Q9UJ72 324 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 LSM5Q9Y4Y9 91 aaKnown RBP4.66□□□□□ -1.66
VPS53-212ENST00000572259 LINC00312Q9Y6C7 94 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 V9GY05 133 aa4.66□□□□□ -1.66
VPS53-212ENST00000572259 TRAV8-4A0A0B4J246 113 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 IGHV3-38A0A0C4DH36 116 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 A0A1B0GUV1 79 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 NPFFO15130 113 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 ZNF737O75373 536 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 ARL6IP5O75915 188 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 OR2H2O95918 312 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 P01737 135 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 TFF1P04155 84 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 MAS1P04201 325 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 CSN2P05814 226 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 UBBP0CG47 229 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 CRHBPP24387 322 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 FLI1Q01543 452 aaPredicted RBP4.65□□□□□ -1.67
VPS53-212ENST00000572259 BAXQ07812 192 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 MPV17LQ2QL34 196 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 LAIR2Q6ISS4 152 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 UFSP1Q6NVU6 142 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 CNIH2Q6PI25 160 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 GDPGP1Q6ZNW5 385 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 TMEM144Q7Z5S9 345 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 PDZD9Q8IXQ8 264 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 OSR2Q8N2R0 312 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 Q8N7P7 452 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 C3orf56Q8N813 242 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 ZFP41Q8N8Y5 198 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 ZDHHC22Q8N966 263 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 ZNF485Q8NCK3 441 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 OR51T1Q8NGJ9 327 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 BORCS5Q969J3 196 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 PGLYRP3Q96LB9 341 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 HIST1H4GQ99525 98 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 P2RX4Q99571 388 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 CHST6Q9GZX3 395 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 ST3GAL6Q9Y274 331 aa4.65□□□□□ -1.67
VPS53-212ENST00000572259 ZNF257Q9Y2Q1 563 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms