RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 TSC22D2O75157 780 aa15.81■□□□□ 0.12
VPS53-210ENST00000571456 CLEC3BP05452 202 aa15.81■□□□□ 0.12
VPS53-210ENST00000571456 PVALBP20472 110 aaPredicted RBP15.81■□□□□ 0.12
VPS53-210ENST00000571456 HOXD3P31249 432 aaPredicted RBP15.81■□□□□ 0.12
VPS53-210ENST00000571456 ARL3P36405 182 aa15.81■□□□□ 0.12
VPS53-210ENST00000571456 DEFA5Q01523 94 aa15.81■□□□□ 0.12
VPS53-210ENST00000571456 CLEC19AQ6UXS0 136 aa15.81■□□□□ 0.12
VPS53-210ENST00000571456 CACNG8Q8WXS5 425 aa15.81■□□□□ 0.12
VPS53-210ENST00000571456 PINX1Q96BK5 328 aaKnown RBP15.81■□□□□ 0.12
VPS53-210ENST00000571456 MAGT1Q9H0U3 335 aa15.81■□□□□ 0.12
VPS53-210ENST00000571456 STRAPQ9Y3F4 350 aaKnown RBP15.81■□□□□ 0.12
VPS53-210ENST00000571456 ALG5Q9Y673 324 aa15.81■□□□□ 0.12
VPS53-210ENST00000571456 DNAH9Q9NYC9 4486 aa15.81■□□□□ 0.12
VPS53-210ENST00000571456 GOSR2O14653 212 aa15.8■□□□□ 0.12
VPS53-210ENST00000571456 TGOLN2O43493 480 aa15.8■□□□□ 0.12
VPS53-210ENST00000571456 SCGB1D2O95969 90 aa15.8■□□□□ 0.12
VPS53-210ENST00000571456 IFNA4P05014 189 aa15.8■□□□□ 0.12
VPS53-210ENST00000571456 GPX4P36969 197 aaPredicted RBP15.8■□□□□ 0.12
VPS53-210ENST00000571456 POLR2GP62487 172 aaKnown RBP eCLIP15.8■□□□□ 0.12
VPS53-210ENST00000571456 IL15RAQ13261 267 aa15.8■□□□□ 0.12
VPS53-210ENST00000571456 GPHB5Q86YW7 130 aa15.8■□□□□ 0.12
VPS53-210ENST00000571456 ASB13Q8WXK3 278 aa15.8■□□□□ 0.12
VPS53-210ENST00000571456 DUX3Q96PT4 197 aa15.8■□□□□ 0.12
VPS53-210ENST00000571456 TRAV30A0A087WSZ9 112 aa15.79■□□□□ 0.12
VPS53-210ENST00000571456 BMPR1BO00238 502 aa15.79■□□□□ 0.12
VPS53-210ENST00000571456 OVOL1O14753 267 aa15.79■□□□□ 0.12
VPS53-210ENST00000571456 SSSCA1O60232 199 aa15.79■□□□□ 0.12
VPS53-210ENST00000571456 MBPP02686 304 aaPredicted RBP15.79■□□□□ 0.12
VPS53-210ENST00000571456 IAPPP10997 89 aa15.79■□□□□ 0.12
VPS53-210ENST00000571456 INSL3P51460 131 aa15.79■□□□□ 0.12
VPS53-210ENST00000571456 KLF5Q13887 457 aaPredicted RBP15.79■□□□□ 0.12
VPS53-210ENST00000571456 FAM106AQ4KMX7 169 aa15.79■□□□□ 0.12
VPS53-210ENST00000571456 Q56UQ5 140 aa15.79■□□□□ 0.12
VPS53-210ENST00000571456 OR4X1Q8NH49 305 aa15.79■□□□□ 0.12
VPS53-210ENST00000571456 DCUN1D4Q92564 292 aa15.79■□□□□ 0.12
VPS53-210ENST00000571456 L7N2F9 121 aa15.78■□□□□ 0.12
VPS53-210ENST00000571456 LGALS9O00182 355 aa15.78■□□□□ 0.12
VPS53-210ENST00000571456 NUPL2O15504 423 aaKnown RBP15.78■□□□□ 0.12
VPS53-210ENST00000571456 GNG7O60262 68 aa15.78■□□□□ 0.12
VPS53-210ENST00000571456 GPR183P32249 361 aa15.78■□□□□ 0.12
VPS53-210ENST00000571456 VAMP2P63027 116 aa15.78■□□□□ 0.12
VPS53-210ENST00000571456 RELQ04864 619 aaPredicted RBP15.78■□□□□ 0.12
VPS53-210ENST00000571456 CD69Q07108 199 aa15.78■□□□□ 0.12
VPS53-210ENST00000571456 ACSM6Q6P461 480 aa15.78■□□□□ 0.12
VPS53-210ENST00000571456 TMEM116Q8NCL8 245 aa15.78■□□□□ 0.12
VPS53-210ENST00000571456 TMEM170AQ8WVE7 144 aa15.78■□□□□ 0.12
VPS53-210ENST00000571456 ELOVL1Q9BW60 279 aa15.78■□□□□ 0.12
VPS53-210ENST00000571456 MED28Q9H204 178 aa15.78■□□□□ 0.12
VPS53-210ENST00000571456 PSENENQ9NZ42 101 aa15.78■□□□□ 0.12
VPS53-210ENST00000571456 PEMTQ9UBM1 199 aa15.78■□□□□ 0.12
VPS53-210ENST00000571456 ZMAT5Q9UDW3 170 aaKnown RBP15.78■□□□□ 0.12
VPS53-210ENST00000571456 RCL1Q9Y2P8 373 aaKnown RBP15.78■□□□□ 0.12
VPS53-210ENST00000571456 C15orf62A8K5M9 175 aa15.77■□□□□ 0.12
VPS53-210ENST00000571456 TRBV12-3P01733 135 aa15.77■□□□□ 0.12
VPS53-210ENST00000571456 RLN2P04090 185 aa15.77■□□□□ 0.12
VPS53-210ENST00000571456 PET100P0DJ07 73 aa15.77■□□□□ 0.12
VPS53-210ENST00000571456 SPANXN5Q5MJ07 72 aa15.77■□□□□ 0.12
VPS53-210ENST00000571456 MGAT4CQ9UBM8 478 aa15.77■□□□□ 0.12
VPS53-210ENST00000571456 K7EPK0 472 aa15.76■□□□□ 0.11
VPS53-210ENST00000571456 CLN5O75503 358 aa15.76■□□□□ 0.11
VPS53-210ENST00000571456 IGHV3-23P01764 117 aa15.76■□□□□ 0.11
VPS53-210ENST00000571456 SLURP1P55000 103 aa15.76■□□□□ 0.11
VPS53-210ENST00000571456 UBAC2Q8NBM4 344 aa15.76■□□□□ 0.11
VPS53-210ENST00000571456 DLX4Q92988 240 aaPredicted RBP15.76■□□□□ 0.11
VPS53-210ENST00000571456 FNDC4Q9H6D8 234 aaPredicted RBP15.76■□□□□ 0.11
VPS53-210ENST00000571456 S4R3C0 116 aa15.76■□□□□ 0.11
VPS53-210ENST00000571456 OR2T8A6NH00 312 aa15.75■□□□□ 0.11
VPS53-210ENST00000571456 PPP5D1E7EU14 171 aa15.75■□□□□ 0.11
VPS53-210ENST00000571456 F8W735 103 aaPredicted RBP15.75■□□□□ 0.11
VPS53-210ENST00000571456 CTSGP08311 255 aa15.75■□□□□ 0.11
VPS53-210ENST00000571456 C9orf66Q5T8R8 295 aa15.75■□□□□ 0.11
VPS53-210ENST00000571456 SLC16A13Q7RTY0 426 aa15.75■□□□□ 0.11
VPS53-210ENST00000571456 SLC35E1Q96K37 410 aa15.75■□□□□ 0.11
VPS53-210ENST00000571456 LSM5Q9Y4Y9 91 aaKnown RBP15.75■□□□□ 0.11
VPS53-210ENST00000571456 TENM2Q9NT68 2774 aa15.75■□□□□ 0.11
VPS53-210ENST00000571456 IGHV3-21A0A0B4J1V1 117 aa15.74■□□□□ 0.11
VPS53-210ENST00000571456 NDUFA4O00483 81 aa15.74■□□□□ 0.11
VPS53-210ENST00000571456 ELLP55199 621 aaPredicted RBP15.74■□□□□ 0.11
VPS53-210ENST00000571456 PAX9P55771 341 aa15.74■□□□□ 0.11
VPS53-210ENST00000571456 H2BFSP57053 126 aa15.74■□□□□ 0.11
VPS53-210ENST00000571456 S100A10P60903 97 aa15.74■□□□□ 0.11
VPS53-210ENST00000571456 RAB32Q13637 225 aa15.74■□□□□ 0.11
VPS53-210ENST00000571456 PRSS54Q6PEW0 395 aa15.74■□□□□ 0.11
VPS53-210ENST00000571456 TMEM14EPQ6UXP3 125 aa15.74■□□□□ 0.11
VPS53-210ENST00000571456 OR9G4Q8NGQ1 327 aa15.74■□□□□ 0.11
VPS53-210ENST00000571456 KRTAP17-1Q9BYP8 105 aa15.74■□□□□ 0.11
VPS53-210ENST00000571456 ZNF436Q9C0F3 470 aaPredicted RBP15.74■□□□□ 0.11
VPS53-210ENST00000571456 SIGLEC8Q9NYZ4 499 aa15.74■□□□□ 0.11
VPS53-210ENST00000571456 A8MWP6 167 aa15.73■□□□□ 0.11
VPS53-210ENST00000571456 FNDC10F2Z333 226 aa15.73■□□□□ 0.11
VPS53-210ENST00000571456 OR2C1O95371 312 aa15.73■□□□□ 0.11
VPS53-210ENST00000571456 TMEM50AO95807 157 aa15.73■□□□□ 0.11
VPS53-210ENST00000571456 SYNJ2BPP57105 145 aa15.73■□□□□ 0.11
VPS53-210ENST00000571456 OR1S2Q8NGQ3 325 aa15.73■□□□□ 0.11
VPS53-210ENST00000571456 OR4C12Q96R67 309 aa15.73■□□□□ 0.11
VPS53-210ENST00000571456 PAIP2BQ9ULR5 123 aaKnown RBP15.73■□□□□ 0.11
VPS53-210ENST00000571456 SEC14L6B5MCN3 397 aa15.72■□□□□ 0.11
VPS53-210ENST00000571456 DEDDO75618 318 aa15.72■□□□□ 0.11
VPS53-210ENST00000571456 SIX6O95475 246 aa15.72■□□□□ 0.11
VPS53-210ENST00000571456 RRAS2P62070 204 aaPredicted RBP15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms