RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 IFNA10P01566 189 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 IGKV1-17P01599 117 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 GIPP09681 153 aaPredicted RBP7.11□□□□□ -1.27
VPS35-211ENST00000569950 SLURP1P55000 103 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 ATP5IP56385 69 aaPredicted RBP7.11□□□□□ -1.27
VPS35-211ENST00000569950 GAMTQ14353 236 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 KHDC1LQ5JSQ8 128 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 SPANXN5Q5MJ07 72 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 PRR31Q5SQ13 230 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 CLEC19AQ6UXS0 136 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 IL34Q6ZMJ4 242 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 ADAMTSL5Q6ZMM2 481 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 TMEM116Q8NCL8 245 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 WFDC9Q8NEX5 89 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 OR11H1Q8NG94 326 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 OR1N2Q8NGR9 330 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 ST6GAL2Q96JF0 529 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 CIB3Q96Q77 187 aaPredicted RBP7.11□□□□□ -1.27
VPS35-211ENST00000569950 ATP6V0BQ99437 205 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 ENY2Q9NPA8 101 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 C21orf62Q9NYP8 219 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 PSENENQ9NZ42 101 aa7.11□□□□□ -1.27
VPS35-211ENST00000569950 PEF1Q9UBV8 284 aaKnown RBP7.11□□□□□ -1.27
VPS35-211ENST00000569950 TRBV7-1A0A0A6YYK4 115 aa7.1□□□□□ -1.27
VPS35-211ENST00000569950 TGOLN2O43493 480 aa7.1□□□□□ -1.27
VPS35-211ENST00000569950 HSPB1P04792 205 aaKnown RBP7.1□□□□□ -1.27
VPS35-211ENST00000569950 CLEC3BP05452 202 aa7.1□□□□□ -1.27
VPS35-211ENST00000569950 METTL15P1P0C7V9 234 aa7.1□□□□□ -1.27
VPS35-211ENST00000569950 IGLC1P0CG04 106 aa7.1□□□□□ -1.27
VPS35-211ENST00000569950 EDN2P20800 178 aa7.1□□□□□ -1.27
VPS35-211ENST00000569950 HOXD3P31249 432 aaPredicted RBP7.1□□□□□ -1.27
VPS35-211ENST00000569950 GPR183P32249 361 aa7.1□□□□□ -1.27
VPS35-211ENST00000569950 MYCNOSP40205 109 aa7.1□□□□□ -1.27
VPS35-211ENST00000569950 S100A10P60903 97 aa7.1□□□□□ -1.27
VPS35-211ENST00000569950 CYCSP99999 105 aaKnown RBP7.1□□□□□ -1.27
VPS35-211ENST00000569950 ZNF616Q08AN1 781 aa7.1□□□□□ -1.27
VPS35-211ENST00000569950 KLF5Q13887 457 aaPredicted RBP7.1□□□□□ -1.27
VPS35-211ENST00000569950 LRRC37A5PQ49AS3 106 aa7.1□□□□□ -1.27
VPS35-211ENST00000569950 SLC16A13Q7RTY0 426 aa7.1□□□□□ -1.27
VPS35-211ENST00000569950 TMEM252Q8N6L7 170 aa7.1□□□□□ -1.27
VPS35-211ENST00000569950 OR4X1Q8NH49 305 aa7.1□□□□□ -1.27
VPS35-211ENST00000569950 DLX4Q92988 240 aaPredicted RBP7.1□□□□□ -1.27
VPS35-211ENST00000569950 EEF1AKMT3Q96AZ1 226 aa7.1□□□□□ -1.27
VPS35-211ENST00000569950 PINX1Q96BK5 328 aaKnown RBP7.1□□□□□ -1.27
VPS35-211ENST00000569950 CXorf58Q96LI9 332 aa7.1□□□□□ -1.27
VPS35-211ENST00000569950 MBD2Q9UBB5 411 aa7.1□□□□□ -1.27
VPS35-211ENST00000569950 STRAPQ9Y3F4 350 aaKnown RBP7.1□□□□□ -1.27
VPS35-211ENST00000569950 OR2T8A6NH00 312 aa7.09□□□□□ -1.27
VPS35-211ENST00000569950 NUDT19A8MXV4 375 aa7.09□□□□□ -1.27
VPS35-211ENST00000569950 LINC01619G3V211 115 aa7.09□□□□□ -1.27
VPS35-211ENST00000569950 SMLR1H3BR10 107 aa7.09□□□□□ -1.27
VPS35-211ENST00000569950 CORTO00230 105 aa7.09□□□□□ -1.27
VPS35-211ENST00000569950 LY86O95711 162 aa7.09□□□□□ -1.27
VPS35-211ENST00000569950 GPX4P36969 197 aaPredicted RBP7.09□□□□□ -1.27
VPS35-211ENST00000569950 RND2P52198 227 aa7.09□□□□□ -1.27
VPS35-211ENST00000569950 SUB1P53999 127 aaKnown RBP eCLIP7.09□□□□□ -1.27
VPS35-211ENST00000569950 RAP2BP61225 183 aa7.09□□□□□ -1.27
VPS35-211ENST00000569950 CD300CQ08708 224 aa7.09□□□□□ -1.27
VPS35-211ENST00000569950 UNQ9165/PRO28630Q6UXU0 137 aa7.09□□□□□ -1.27
VPS35-211ENST00000569950 ACOT7LQ6ZUV0 252 aa7.09□□□□□ -1.27
VPS35-211ENST00000569950 THAP8Q8NA92 274 aa7.09□□□□□ -1.27
VPS35-211ENST00000569950 OR11H4Q8NGC9 324 aa7.09□□□□□ -1.27
VPS35-211ENST00000569950 DCUN1D4Q92564 292 aa7.09□□□□□ -1.27
VPS35-211ENST00000569950 TXN2Q99757 166 aa7.09□□□□□ -1.27
VPS35-211ENST00000569950 RANGRFQ9HD47 186 aaPredicted RBP7.09□□□□□ -1.27
VPS35-211ENST00000569950 ZC4H2Q9NQZ6 224 aa7.09□□□□□ -1.27
VPS35-211ENST00000569950 THYN1Q9P016 225 aa7.09□□□□□ -1.27
VPS35-211ENST00000569950 FBN3Q75N90 2809 aa7.09□□□□□ -1.28
VPS35-211ENST00000569950 SORL1Q92673 2214 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 RNF222A6NCQ9 220 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 M0QZ24 198 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 CLN5O75503 358 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 CST7O76096 145 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 OR2C1O95371 312 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 ARL3P36405 182 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 OPRK1P41145 380 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 P2RY1P47900 373 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 MFAP4P55083 255 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 EWSR1Q01844 656 aaKnown RBP eCLIP7.08□□□□□ -1.28
VPS35-211ENST00000569950 NHLH2Q02577 135 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 VWC2Q2TAL6 325 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 TMEM182Q6ZP80 229 aaPredicted RBP7.08□□□□□ -1.28
VPS35-211ENST00000569950 OR4F17Q8NGA8 305 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 ASB13Q8WXK3 278 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 CACNG8Q8WXS5 425 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 NPIPB3Q92617 1050 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 RCC1LQ96I51 464 aaKnown RBP7.08□□□□□ -1.28
VPS35-211ENST00000569950 OR4F4Q96R69 305 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 ZFAND3Q9H8U3 227 aa7.08□□□□□ -1.28
VPS35-211ENST00000569950 LSM4Q9Y4Z0 139 aaKnown RBP7.08□□□□□ -1.28
VPS35-211ENST00000569950 hCG_2014768A0A024R1R8 64 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 IGHV3-35A0A0C4DH35 117 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 TMEM213A2RRL7 107 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 A8MWP6 167 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 E5RGE8 158 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 GGCTO75223 188 aaKnown RBP7.07□□□□□ -1.28
VPS35-211ENST00000569950 IFNA4P05014 189 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 OR8U8P0C7N1 319 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 SLC25A4P12235 298 aa7.07□□□□□ -1.28
VPS35-211ENST00000569950 SULT1A1P50225 295 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms