RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 HBBP68871 147 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 MORN2Q502X0 79 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 OR10J3Q5JRS4 329 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 FAM222BQ8WU58 562 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 LAMA5O15230 3695 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 A0A1W2PN81 502 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 A6NDN8 102 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 RIPPLY3P57055 190 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 SRSF12Q8WXF0 261 aaKnown RBP9.44□□□□□ -0.9
CLN3-238ENST00000569430 COQ2Q96H96 371 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 ZPBPQ9BS86 351 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 TNFRSF19Q9NS68 423 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 TRBV20OR9-2A0A075B6H5 130 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 IL18BPO95998 194 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 ZNF138P52744 262 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 WDR82Q6UXN9 313 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 TEX43Q6ZNM6 134 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 LINC00305Q7Z4B0 112 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 OR10W1Q8NGF6 305 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 GAL3ST2Q9H3Q3 398 aa9.44□□□□□ -0.9
CLN3-238ENST00000569430 SLC25A17O43808 307 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 PDLIM4P50479 330 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 ARF6P62330 175 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 Q0VFX4 171 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 PMS2CLQ68D20 193 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 TMEM144Q7Z5S9 345 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 RAB1CQ92928 201 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 RNF7Q9UBF6 113 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 HILPDAQ9Y5L2 63 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.43□□□□□ -0.9
CLN3-238ENST00000569430 RIGQ13278 110 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 C5orf17Q8NAS9 161 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 ZNF430Q9H8G1 570 aaPredicted RBP9.43□□□□□ -0.9
CLN3-238ENST00000569430 MED13Q9UHV7 2174 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 CD24P25063 80 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 OR4F17Q8NGA8 305 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 GRAMD2BQ96HH9 432 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 SFXN3Q9BWM7 321 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 IFI27L2Q9H2X8 130 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 FNDC4Q9H6D8 234 aaPredicted RBP9.43□□□□□ -0.9
CLN3-238ENST00000569430 AP5S1Q9NUS5 200 aa9.43□□□□□ -0.9
CLN3-238ENST00000569430 TNRC18O15417 2968 aaPredicted RBP9.42□□□□□ -0.9
CLN3-238ENST00000569430 FAM181BA6NEQ2 426 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 OR2J3O76001 311 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 PLP1P60201 277 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 Q0VG73 95 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 STXBP6Q8NFX7 210 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 VSTM2AQ8TAG5 236 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 COX11Q9Y6N1 276 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 PLXNB1O43157 2135 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 C9JCJ5 164 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 J3QR89 54 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 MLNRO43193 412 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 CECR9P0C854 216 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 PSG1P11464 419 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 IGHV1-2P23083 117 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 GOLT1AQ6ZVE7 132 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 WFDC3Q8IUB2 231 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 TMEM116Q8NCL8 245 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 NUDT10Q8NFP7 164 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 NUDT11Q96G61 164 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 MBNL3Q9NUK0 354 aaKnown RBP9.42□□□□□ -0.9
CLN3-238ENST00000569430 SAA2-SAA4A0A096LPE2 208 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 C15orf61A6NNL5 157 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 DLL1O00548 723 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 NDUFB3O43676 98 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 CRYABP02511 175 aaKnown RBP9.42□□□□□ -0.9
CLN3-238ENST00000569430 NBEAP1P0C6P0 100 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 SAA2P0DJI9 122 aaPredicted RBP9.42□□□□□ -0.9
CLN3-238ENST00000569430 GCSHP23434 173 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 COX7A1P24310 79 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 GAGE1Q13065 139 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 ZNF295-AS1Q8N0V1 137 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 WDR31Q8NA23 367 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 ORAOV1Q8WV07 137 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 SNRNP40Q96DI7 357 aaKnown RBP9.42□□□□□ -0.9
CLN3-238ENST00000569430 PRDM6Q9NQX0 595 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 DCHS1Q96JQ0 3298 aa9.42□□□□□ -0.9
CLN3-238ENST00000569430 IGKV3D-15A0A087WSY6 115 aa9.41□□□□□ -0.9
CLN3-238ENST00000569430 A0A087X0K7 114 aa9.41□□□□□ -0.9
CLN3-238ENST00000569430 K7ESF4 209 aa9.41□□□□□ -0.9
CLN3-238ENST00000569430 LIPFP07098 398 aa9.41□□□□□ -0.9
CLN3-238ENST00000569430 DEFB109BQ30KR1 87 aa9.41□□□□□ -0.9
CLN3-238ENST00000569430 BHLHA15Q7RTS1 189 aaPredicted RBP9.41□□□□□ -0.9
CLN3-238ENST00000569430 PEF1Q9UBV8 284 aaKnown RBP9.41□□□□□ -0.9
CLN3-238ENST00000569430 PILRBQ9UKJ0 227 aa9.41□□□□□ -0.9
CLN3-238ENST00000569430 NPIPB11E5RHQ5 1161 aa9.41□□□□□ -0.9
CLN3-238ENST00000569430 K7EN84 100 aa9.41□□□□□ -0.9
CLN3-238ENST00000569430 TDGF1P13385 188 aa9.41□□□□□ -0.9
CLN3-238ENST00000569430 AREGP15514 252 aa9.41□□□□□ -0.9
CLN3-238ENST00000569430 WDR86Q86TI4 376 aa9.41□□□□□ -0.9
CLN3-238ENST00000569430 ARL6IP6Q8N6S5 226 aa9.41□□□□□ -0.9
CLN3-238ENST00000569430 RNASE8Q8TDE3 154 aaKnown RBP9.41□□□□□ -0.9
CLN3-238ENST00000569430 IQCF6A8MYZ5 107 aa9.4□□□□□ -0.9
CLN3-238ENST00000569430 H3BUT2 72 aa9.4□□□□□ -0.9
CLN3-238ENST00000569430 CCL25O15444 150 aa9.4□□□□□ -0.9
CLN3-238ENST00000569430 APOHP02749 345 aaPredicted RBP9.4□□□□□ -0.9
CLN3-238ENST00000569430 SLAQ13239 276 aa9.4□□□□□ -0.9
CLN3-238ENST00000569430 FAM216BQ8N7L0 139 aa9.4□□□□□ -0.9
CLN3-238ENST00000569430 AAMDCQ9H7C9 122 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms