RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 KCNIP3Q9Y2W7 256 aa13.71□□□□□ -0.21
CLN3-237ENST00000569030 IGHV7-4-1A0A0J9YVY3 117 aa13.7□□□□□ -0.22
CLN3-237ENST00000569030 CHEK1O14757 476 aa13.7□□□□□ -0.22
CLN3-237ENST00000569030 TMEM50AO95807 157 aa13.7□□□□□ -0.22
CLN3-237ENST00000569030 S100A5P33763 92 aa13.7□□□□□ -0.22
CLN3-237ENST00000569030 NPBWR1P48145 328 aa13.7□□□□□ -0.22
CLN3-237ENST00000569030 CASC10Q5T4H9 136 aa13.7□□□□□ -0.22
CLN3-237ENST00000569030 TOMM20LQ6UXN7 152 aa13.7□□□□□ -0.22
CLN3-237ENST00000569030 RNF2Q99496 336 aa13.7□□□□□ -0.22
CLN3-237ENST00000569030 SPAG8Q99932 426 aaPredicted RBP13.7□□□□□ -0.22
CLN3-237ENST00000569030 FAM110AQ9BQ89 295 aa13.7□□□□□ -0.22
CLN3-237ENST00000569030 RHPN1-AS1Q9BWJ2 59 aa13.7□□□□□ -0.22
CLN3-237ENST00000569030 NXPH3O95157 252 aa13.69□□□□□ -0.22
CLN3-237ENST00000569030 LAMTOR1Q6IAA8 161 aa13.69□□□□□ -0.22
CLN3-237ENST00000569030 TOMM5Q8N4H5 51 aa13.69□□□□□ -0.22
CLN3-237ENST00000569030 TMEM116Q8NCL8 245 aa13.69□□□□□ -0.22
CLN3-237ENST00000569030 IL22RA2Q969J5 263 aa13.69□□□□□ -0.22
CLN3-237ENST00000569030 HEYLQ9NQ87 328 aaPredicted RBP13.69□□□□□ -0.22
CLN3-237ENST00000569030 UBQLN2Q9UHD9 624 aa13.69□□□□□ -0.22
CLN3-237ENST00000569030 RYR3Q15413 4870 aa13.68□□□□□ -0.22
CLN3-237ENST00000569030 IGHV3OR16-13A0A075B7E8 117 aa13.68□□□□□ -0.22
CLN3-237ENST00000569030 TRAV14DV4A0A0A6YYC5 116 aa13.68□□□□□ -0.22
CLN3-237ENST00000569030 IGHV3-74A0A0B4J1X5 117 aa13.68□□□□□ -0.22
CLN3-237ENST00000569030 ZNF701M0R085 212 aaPredicted RBP13.68□□□□□ -0.22
CLN3-237ENST00000569030 CORTO00230 105 aa13.68□□□□□ -0.22
CLN3-237ENST00000569030 OPRK1P41145 380 aa13.68□□□□□ -0.22
CLN3-237ENST00000569030 LYZL2Q7Z4W2 148 aa13.68□□□□□ -0.22
CLN3-237ENST00000569030 A0A1B0GU03 582 aa13.67□□□□□ -0.22
CLN3-237ENST00000569030 APOHP02749 345 aaPredicted RBP13.67□□□□□ -0.22
CLN3-237ENST00000569030 SULT1A3P0DMM9 295 aa13.67□□□□□ -0.22
CLN3-237ENST00000569030 SULT1A4P0DMN0 295 aa13.67□□□□□ -0.22
CLN3-237ENST00000569030 LYL1P12980 280 aa13.67□□□□□ -0.22
CLN3-237ENST00000569030 FAUP35544 74 aaKnown RBP13.67□□□□□ -0.22
CLN3-237ENST00000569030 HTR2BP41595 481 aa13.67□□□□□ -0.22
CLN3-237ENST00000569030 ODF3L2Q3SX64 289 aa13.67□□□□□ -0.22
CLN3-237ENST00000569030 NMSQ5H8A3 153 aa13.67□□□□□ -0.22
CLN3-237ENST00000569030 LILRB2Q8N423 598 aa13.67□□□□□ -0.22
CLN3-237ENST00000569030 TMEM170AQ8WVE7 144 aa13.67□□□□□ -0.22
CLN3-237ENST00000569030 ZFAND3Q9H8U3 227 aa13.67□□□□□ -0.22
CLN3-237ENST00000569030 PUS1Q9Y606 427 aaKnown RBP eCLIP13.67□□□□□ -0.22
CLN3-237ENST00000569030 STARD9Q9P2P6 4700 aa13.66□□□□□ -0.22
CLN3-237ENST00000569030 LOC102724200A0A096LPH7 203 aaPredicted RBP13.66□□□□□ -0.22
CLN3-237ENST00000569030 CEBPZOSA8MTT3 80 aa13.66□□□□□ -0.22
CLN3-237ENST00000569030 CLN5O75503 358 aa13.66□□□□□ -0.22
CLN3-237ENST00000569030 AP3S2P59780 193 aa13.66□□□□□ -0.22
CLN3-237ENST00000569030 FAM90A2PQ658T7 463 aa13.66□□□□□ -0.22
CLN3-237ENST00000569030 ZNF600Q6ZNG1 722 aa13.66□□□□□ -0.22
CLN3-237ENST00000569030 TMED4Q7Z7H5 227 aa13.66□□□□□ -0.22
CLN3-237ENST00000569030 OR4X1Q8NH49 305 aa13.66□□□□□ -0.22
CLN3-237ENST00000569030 GGTLC1Q9BX51 225 aa13.66□□□□□ -0.22
CLN3-237ENST00000569030 DYNC2H1Q8NCM8 4307 aaKnown RBP13.66□□□□□ -0.22
CLN3-237ENST00000569030 A0A0B4J2A0 478 aa13.65□□□□□ -0.22
CLN3-237ENST00000569030 OR4C46A6NHA9 309 aa13.65□□□□□ -0.22
CLN3-237ENST00000569030 C2orf83Q53S99 150 aa13.65□□□□□ -0.22
CLN3-237ENST00000569030 ZFAND6Q6FIF0 208 aa13.65□□□□□ -0.22
CLN3-237ENST00000569030 ST8SIA2Q92186 375 aa13.65□□□□□ -0.22
CLN3-237ENST00000569030 SHPKQ9UHJ6 478 aa13.65□□□□□ -0.22
CLN3-237ENST00000569030 IGKV3-7A0A075B6H7 116 aa13.64□□□□□ -0.23
CLN3-237ENST00000569030 IGKV1-17P01599 117 aa13.64□□□□□ -0.23
CLN3-237ENST00000569030 TFPI2P48307 235 aa13.64□□□□□ -0.23
CLN3-237ENST00000569030 CCR6P51684 374 aa13.64□□□□□ -0.23
CLN3-237ENST00000569030 SMCO1Q147U7 214 aa13.64□□□□□ -0.23
CLN3-237ENST00000569030 TIGITQ495A1 244 aa13.64□□□□□ -0.23
CLN3-237ENST00000569030 SPANXN2Q5MJ10 180 aa13.64□□□□□ -0.23
CLN3-237ENST00000569030 LGI3Q8N145 548 aa13.64□□□□□ -0.23
CLN3-237ENST00000569030 SLC24A4Q8NFF2 622 aa13.64□□□□□ -0.23
CLN3-237ENST00000569030 GINS3Q9BRX5 216 aa13.64□□□□□ -0.23
CLN3-237ENST00000569030 SRRQ9GZT4 340 aa13.64□□□□□ -0.23
CLN3-237ENST00000569030 VSIRQ9H7M9 311 aa13.64□□□□□ -0.23
CLN3-237ENST00000569030 HSPB7Q9UBY9 170 aa13.64□□□□□ -0.23
CLN3-237ENST00000569030 LYSTQ99698 3801 aa13.64□□□□□ -0.23
CLN3-237ENST00000569030 IGHV3-66A0A0C4DH42 116 aa13.63□□□□□ -0.23
CLN3-237ENST00000569030 ANXA3P12429 323 aa13.63□□□□□ -0.23
CLN3-237ENST00000569030 TNFRSF9Q07011 255 aa13.63□□□□□ -0.23
CLN3-237ENST00000569030 TMEM128Q5BJH2 165 aa13.63□□□□□ -0.23
CLN3-237ENST00000569030 PRSS54Q6PEW0 395 aa13.63□□□□□ -0.23
CLN3-237ENST00000569030 GBGT1Q8N5D6 347 aa13.63□□□□□ -0.23
CLN3-237ENST00000569030 RNASEH2CQ8TDP1 164 aaKnown RBP13.63□□□□□ -0.23
CLN3-237ENST00000569030 SLC25A21Q9BQT8 299 aaPredicted RBP13.63□□□□□ -0.23
CLN3-237ENST00000569030 RBKSQ9H477 322 aa13.63□□□□□ -0.23
CLN3-237ENST00000569030 NPY1RP25929 384 aa13.62□□□□□ -0.23
CLN3-237ENST00000569030 SRPXP78539 464 aa13.62□□□□□ -0.23
CLN3-237ENST00000569030 ZNF124Q15973 351 aa13.62□□□□□ -0.23
CLN3-237ENST00000569030 BAK1Q16611 211 aa13.62□□□□□ -0.23
CLN3-237ENST00000569030 TCF24Q7RTU0 167 aa13.62□□□□□ -0.23
CLN3-237ENST00000569030 APRG1Q8IVJ8 170 aa13.62□□□□□ -0.23
CLN3-237ENST00000569030 DEDD2Q8WXF8 326 aa13.62□□□□□ -0.23
CLN3-237ENST00000569030 OVOL2Q9BRP0 275 aa13.62□□□□□ -0.23
CLN3-237ENST00000569030 AGRNO00468 2067 aa13.61□□□□□ -0.23
CLN3-237ENST00000569030 RPS10-NUDT3A0A1W2PQS6 291 aa13.61□□□□□ -0.23
CLN3-237ENST00000569030 DFFBO76075 338 aa13.61□□□□□ -0.23
CLN3-237ENST00000569030 VAMP1P23763 118 aa13.61□□□□□ -0.23
CLN3-237ENST00000569030 RND2P52198 227 aa13.61□□□□□ -0.23
CLN3-237ENST00000569030 SDHCQ99643 169 aaPredicted RBP13.61□□□□□ -0.23
CLN3-237ENST00000569030 CACFD1Q9UGQ2 172 aa13.61□□□□□ -0.23
CLN3-237ENST00000569030 TRAV30A0A087WSZ9 112 aa13.6□□□□□ -0.23
CLN3-237ENST00000569030 PITX3O75364 302 aa13.6□□□□□ -0.23
CLN3-237ENST00000569030 IGLC1P0CG04 106 aa13.6□□□□□ -0.23
CLN3-237ENST00000569030 NPPCP23582 126 aa13.6□□□□□ -0.23
CLN3-237ENST00000569030 PPP1R1AQ13522 171 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms