RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ASAH1Q13510 395 aa9.88□□□□□ -0.83
CLK3-224ENST00000568605 PVRIGQ6DKI7 326 aa9.88□□□□□ -0.83
CLK3-224ENST00000568605 ETFRF1Q6IPR1 90 aa9.88□□□□□ -0.83
CLK3-224ENST00000568605 IL34Q6ZMJ4 242 aa9.88□□□□□ -0.83
CLK3-224ENST00000568605 HAPLN4Q86UW8 402 aa9.88□□□□□ -0.83
CLK3-224ENST00000568605 CIB3Q96Q77 187 aaPredicted RBP9.88□□□□□ -0.83
CLK3-224ENST00000568605 DAZ1Q9NQZ3 744 aaKnown RBP9.88□□□□□ -0.83
CLK3-224ENST00000568605 U3KQ87 197 aa9.88□□□□□ -0.83
CLK3-224ENST00000568605 TRAV6A0A075B6T7 132 aa9.87□□□□□ -0.83
CLK3-224ENST00000568605 TMEM213A2RRL7 107 aa9.87□□□□□ -0.83
CLK3-224ENST00000568605 F8W735 103 aaPredicted RBP9.87□□□□□ -0.83
CLK3-224ENST00000568605 SLC25A4P12235 298 aa9.87□□□□□ -0.83
CLK3-224ENST00000568605 FOLR2P14207 255 aa9.87□□□□□ -0.83
CLK3-224ENST00000568605 DEFA1P59665 94 aa9.87□□□□□ -0.83
CLK3-224ENST00000568605 DEFA3P59666 94 aa9.87□□□□□ -0.83
CLK3-224ENST00000568605 GGNBP1Q5YKI7 109 aa9.87□□□□□ -0.83
CLK3-224ENST00000568605 GTSCR1Q86UQ5 136 aa9.87□□□□□ -0.83
CLK3-224ENST00000568605 GINS3Q9BRX5 216 aa9.87□□□□□ -0.83
CLK3-224ENST00000568605 RBKSQ9H477 322 aa9.87□□□□□ -0.83
CLK3-224ENST00000568605 MRPL27Q9P0M9 148 aaKnown RBP9.87□□□□□ -0.83
CLK3-224ENST00000568605 TRAV30A0A087WSZ9 112 aa9.86□□□□□ -0.83
CLK3-224ENST00000568605 IGHV3-35A0A0C4DH35 117 aa9.86□□□□□ -0.83
CLK3-224ENST00000568605 WRBO00258 174 aa9.86□□□□□ -0.83
CLK3-224ENST00000568605 PITX3O75364 302 aa9.86□□□□□ -0.83
CLK3-224ENST00000568605 TGP01266 2768 aa9.86□□□□□ -0.83
CLK3-224ENST00000568605 CTSGP08311 255 aa9.86□□□□□ -0.83
CLK3-224ENST00000568605 CBLN1P23435 193 aa9.86□□□□□ -0.83
CLK3-224ENST00000568605 ADMP35318 185 aa9.86□□□□□ -0.83
CLK3-224ENST00000568605 RAB11AP62491 216 aa9.86□□□□□ -0.83
CLK3-224ENST00000568605 RPP30P78346 268 aaKnown RBP9.86□□□□□ -0.83
CLK3-224ENST00000568605 UNQ9165/PRO28630Q6UXU0 137 aa9.86□□□□□ -0.83
CLK3-224ENST00000568605 MITD1Q8WV92 249 aa9.86□□□□□ -0.83
CLK3-224ENST00000568605 CHRDL1Q9BU40 450 aa9.86□□□□□ -0.83
CLK3-224ENST00000568605 C20orf24Q9BUV8 137 aa9.86□□□□□ -0.83
CLK3-224ENST00000568605 TBC1D24Q9ULP9 559 aa9.86□□□□□ -0.83
CLK3-224ENST00000568605 SMAD5-AS1Q9Y6J3 95 aa9.86□□□□□ -0.83
CLK3-224ENST00000568605 C15orf62A8K5M9 175 aa9.85□□□□□ -0.83
CLK3-224ENST00000568605 SYNGR2O43760 224 aa9.85□□□□□ -0.83
CLK3-224ENST00000568605 CLN5O75503 358 aa9.85□□□□□ -0.83
CLK3-224ENST00000568605 YIF1AO95070 293 aa9.85□□□□□ -0.83
CLK3-224ENST00000568605 IGHV3-48P01763 117 aa9.85□□□□□ -0.83
CLK3-224ENST00000568605 H2AFB2P0C5Z0 115 aa9.85□□□□□ -0.83
CLK3-224ENST00000568605 BMI1P35226 326 aa9.85□□□□□ -0.83
CLK3-224ENST00000568605 CD69Q07108 199 aa9.85□□□□□ -0.83
CLK3-224ENST00000568605 ZNF600Q6ZNG1 722 aa9.85□□□□□ -0.83
CLK3-224ENST00000568605 UXS1Q8NBZ7 420 aa9.85□□□□□ -0.83
CLK3-224ENST00000568605 OR4X1Q8NH49 305 aa9.85□□□□□ -0.83
CLK3-224ENST00000568605 CACNG8Q8WXS5 425 aa9.85□□□□□ -0.83
CLK3-224ENST00000568605 K7EMT4 169 aa9.84□□□□□ -0.83
CLK3-224ENST00000568605 ADAP1O75689 374 aa9.84□□□□□ -0.83
CLK3-224ENST00000568605 IFNA4P05014 189 aa9.84□□□□□ -0.83
CLK3-224ENST00000568605 NKX2-1P43699 371 aaPredicted RBP9.84□□□□□ -0.83
CLK3-224ENST00000568605 DEFB114Q30KQ6 69 aa9.84□□□□□ -0.83
CLK3-224ENST00000568605 CD300EQ496F6 205 aaPredicted RBP9.84□□□□□ -0.83
CLK3-224ENST00000568605 TM4SF20Q53R12 229 aa9.84□□□□□ -0.83
CLK3-224ENST00000568605 BTNL8Q6UX41 500 aa9.84□□□□□ -0.83
CLK3-224ENST00000568605 SLC16A13Q7RTY0 426 aa9.84□□□□□ -0.83
CLK3-224ENST00000568605 B9D2Q9BPU9 175 aa9.84□□□□□ -0.83
CLK3-224ENST00000568605 FNDC4Q9H6D8 234 aaPredicted RBP9.84□□□□□ -0.83
CLK3-224ENST00000568605 LSM4Q9Y4Z0 139 aaKnown RBP9.84□□□□□ -0.83
CLK3-224ENST00000568605 TRAV25A0A0B4J276 109 aa9.83□□□□□ -0.84
CLK3-224ENST00000568605 C8orf88P0DMB2 117 aa9.83□□□□□ -0.84
CLK3-224ENST00000568605 IAPPP10997 89 aa9.83□□□□□ -0.84
CLK3-224ENST00000568605 RND2P52198 227 aa9.83□□□□□ -0.84
CLK3-224ENST00000568605 GUCA2BQ16661 112 aa9.83□□□□□ -0.84
CLK3-224ENST00000568605 LAMTOR1Q6IAA8 161 aa9.83□□□□□ -0.84
CLK3-224ENST00000568605 ADAMTSL5Q6ZMM2 481 aa9.83□□□□□ -0.84
CLK3-224ENST00000568605 RBPMS2Q6ZRY4 209 aaKnown RBP9.83□□□□□ -0.84
CLK3-224ENST00000568605 OR52B4Q8NGK2 314 aa9.83□□□□□ -0.84
CLK3-224ENST00000568605 OR1S2Q8NGQ3 325 aa9.83□□□□□ -0.84
CLK3-224ENST00000568605 ZNF431Q8TF32 576 aaPredicted RBP9.83□□□□□ -0.84
CLK3-224ENST00000568605 SLC35E1Q96K37 410 aa9.83□□□□□ -0.84
CLK3-224ENST00000568605 GPN1Q9HCN4 374 aaPredicted RBP9.83□□□□□ -0.84
CLK3-224ENST00000568605 PAIP2BQ9ULR5 123 aaKnown RBP9.83□□□□□ -0.84
CLK3-224ENST00000568605 TMEM50AO95807 157 aa9.82□□□□□ -0.84
CLK3-224ENST00000568605 EDN2P20800 178 aa9.82□□□□□ -0.84
CLK3-224ENST00000568605 CD81P60033 236 aa9.82□□□□□ -0.84
CLK3-224ENST00000568605 IAH1Q2TAA2 248 aaPredicted RBP9.82□□□□□ -0.84
CLK3-224ENST00000568605 PRSS54Q6PEW0 395 aa9.82□□□□□ -0.84
CLK3-224ENST00000568605 TMEM61Q8N0U2 210 aa9.82□□□□□ -0.84
CLK3-224ENST00000568605 TMEM116Q8NCL8 245 aa9.82□□□□□ -0.84
CLK3-224ENST00000568605 ACY3Q96HD9 319 aa9.82□□□□□ -0.84
CLK3-224ENST00000568605 NARS2Q96I59 477 aaKnown RBP9.82□□□□□ -0.84
CLK3-224ENST00000568605 OR10C1Q96KK4 312 aa9.82□□□□□ -0.84
CLK3-224ENST00000568605 MAGT1Q9H0U3 335 aa9.82□□□□□ -0.84
CLK3-224ENST00000568605 TMEM231Q9H6L2 316 aa9.82□□□□□ -0.84
CLK3-224ENST00000568605 MLXQ9UH92 298 aa9.82□□□□□ -0.84
CLK3-224ENST00000568605 PUS1Q9Y606 427 aaKnown RBP eCLIP9.82□□□□□ -0.84
CLK3-224ENST00000568605 IGHV3OR16-8A0A075B7F1 116 aa9.81□□□□□ -0.84
CLK3-224ENST00000568605 TRAV14DV4A0A0A6YYC5 116 aa9.81□□□□□ -0.84
CLK3-224ENST00000568605 IZUMO1RA6ND01 250 aa9.81□□□□□ -0.84
CLK3-224ENST00000568605 SCGB1D2O95969 90 aa9.81□□□□□ -0.84
CLK3-224ENST00000568605 CD5P06127 495 aa9.81□□□□□ -0.84
CLK3-224ENST00000568605 FABP1P07148 127 aa9.81□□□□□ -0.84
CLK3-224ENST00000568605 OR10J1P30954 320 aa9.81□□□□□ -0.84
CLK3-224ENST00000568605 GPX4P36969 197 aaPredicted RBP9.81□□□□□ -0.84
CLK3-224ENST00000568605 C12orf45Q8N5I9 185 aaPredicted RBP9.81□□□□□ -0.84
CLK3-224ENST00000568605 OR4D5Q8NGN0 318 aa9.81□□□□□ -0.84
CLK3-224ENST00000568605 TMEM170AQ8WVE7 144 aa9.81□□□□□ -0.84
CLK3-224ENST00000568605 SEC22CQ9BRL7 303 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms