RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 PAFAH1B2P68402 229 aa16.65■□□□□ 0.26
CLN3-232ENST00000568443 DHODHQ02127 395 aa16.65■□□□□ 0.26
CLN3-232ENST00000568443 ZNF600Q6ZNG1 722 aa16.65■□□□□ 0.26
CLN3-232ENST00000568443 Q6ZRM9 215 aa16.65■□□□□ 0.26
CLN3-232ENST00000568443 OR4C16Q8NGL9 310 aa16.65■□□□□ 0.26
CLN3-232ENST00000568443 NAA60Q9H7X0 242 aa16.65■□□□□ 0.26
CLN3-232ENST00000568443 PUS1Q9Y606 427 aaKnown RBP eCLIP16.65■□□□□ 0.26
CLN3-232ENST00000568443 JTBO76095 146 aa16.64■□□□□ 0.25
CLN3-232ENST00000568443 SPCS3P61009 180 aa16.64■□□□□ 0.25
CLN3-232ENST00000568443 DEFB135Q30KP9 77 aa16.64■□□□□ 0.25
CLN3-232ENST00000568443 TCF24Q7RTU0 167 aa16.64■□□□□ 0.25
CLN3-232ENST00000568443 WFDC3Q8IUB2 231 aa16.64■□□□□ 0.25
CLN3-232ENST00000568443 APRG1Q8IVJ8 170 aa16.64■□□□□ 0.25
CLN3-232ENST00000568443 GBGT1Q8N5D6 347 aa16.64■□□□□ 0.25
CLN3-232ENST00000568443 RBPMSQ93062 196 aaKnown RBP16.64■□□□□ 0.25
CLN3-232ENST00000568443 PRRT1Q99946 306 aa16.64■□□□□ 0.25
CLN3-232ENST00000568443 GPR132Q9UNW8 380 aa16.64■□□□□ 0.25
CLN3-232ENST00000568443 OPRK1P41145 380 aa16.63■□□□□ 0.25
CLN3-232ENST00000568443 FAM90A2PQ658T7 463 aa16.63■□□□□ 0.25
CLN3-232ENST00000568443 SELENOHQ8IZQ5 122 aaKnown RBP16.63■□□□□ 0.25
CLN3-232ENST00000568443 OR51S1Q8NGJ8 323 aa16.63■□□□□ 0.25
CLN3-232ENST00000568443 CRYM-AS1A6NIL9 109 aa16.62■□□□□ 0.25
CLN3-232ENST00000568443 NOL3O60936 208 aaKnown RBP16.62■□□□□ 0.25
CLN3-232ENST00000568443 RPL5P46777 297 aaKnown RBP16.62■□□□□ 0.25
CLN3-232ENST00000568443 MLANAQ16655 118 aa16.62■□□□□ 0.25
CLN3-232ENST00000568443 AARDQ4LEZ3 155 aa16.62■□□□□ 0.25
CLN3-232ENST00000568443 TMEM268Q5VZI3 342 aa16.62■□□□□ 0.25
CLN3-232ENST00000568443 OR52E5Q8NH55 327 aa16.62■□□□□ 0.25
CLN3-232ENST00000568443 LHFPL5Q8TAF8 219 aa16.62■□□□□ 0.25
CLN3-232ENST00000568443 ST8SIA2Q92186 375 aa16.62■□□□□ 0.25
CLN3-232ENST00000568443 FNDC4Q9H6D8 234 aaPredicted RBP16.62■□□□□ 0.25
CLN3-232ENST00000568443 MAP6D1Q9H9H5 199 aa16.62■□□□□ 0.25
CLN3-232ENST00000568443 HEYLQ9NQ87 328 aaPredicted RBP16.62■□□□□ 0.25
CLN3-232ENST00000568443 RSL24D1Q9UHA3 163 aaKnown RBP16.62■□□□□ 0.25
CLN3-232ENST00000568443 DNAH1Q9P2D7 4330 aa16.62■□□□□ 0.25
CLN3-232ENST00000568443 A0A0J9YWU9 116 aa16.61■□□□□ 0.25
CLN3-232ENST00000568443 CLN5O75503 358 aa16.61■□□□□ 0.25
CLN3-232ENST00000568443 SCGB2A1O75556 95 aa16.61■□□□□ 0.25
CLN3-232ENST00000568443 APOHP02749 345 aaPredicted RBP16.61■□□□□ 0.25
CLN3-232ENST00000568443 HTR2BP41595 481 aa16.61■□□□□ 0.25
CLN3-232ENST00000568443 RPL11P62913 178 aaKnown RBP16.61■□□□□ 0.25
CLN3-232ENST00000568443 BSXQ3C1V8 233 aa16.61■□□□□ 0.25
CLN3-232ENST00000568443 OR4X1Q8NH49 305 aa16.61■□□□□ 0.25
CLN3-232ENST00000568443 RNF183Q96D59 192 aa16.61■□□□□ 0.25
CLN3-232ENST00000568443 VSIRQ9H7M9 311 aa16.61■□□□□ 0.25
CLN3-232ENST00000568443 ZFAND3Q9H8U3 227 aa16.61■□□□□ 0.25
CLN3-232ENST00000568443 CACNG5Q9UF02 275 aa16.61■□□□□ 0.25
CLN3-232ENST00000568443 KCNIP3Q9Y2W7 256 aa16.61■□□□□ 0.25
CLN3-232ENST00000568443 IGHV3-66A0A0C4DH42 116 aa16.6■□□□□ 0.25
CLN3-232ENST00000568443 A0A1B0GU03 582 aa16.6■□□□□ 0.25
CLN3-232ENST00000568443 ANKRD20A5PA0PJZ0 165 aa16.6■□□□□ 0.25
CLN3-232ENST00000568443 DNASE2O00115 360 aaPredicted RBP16.6■□□□□ 0.25
CLN3-232ENST00000568443 GSTZ1O43708 216 aaPredicted RBP16.6■□□□□ 0.25
CLN3-232ENST00000568443 NPPCP23582 126 aa16.6■□□□□ 0.25
CLN3-232ENST00000568443 TNFRSF9Q07011 255 aa16.6■□□□□ 0.25
CLN3-232ENST00000568443 ZNF124Q15973 351 aa16.6■□□□□ 0.25
CLN3-232ENST00000568443 LYG2Q86SG7 212 aa16.6■□□□□ 0.25
CLN3-232ENST00000568443 LILRB2Q8N423 598 aa16.6■□□□□ 0.25
CLN3-232ENST00000568443 TMEM230Q96A57 120 aa16.6■□□□□ 0.25
CLN3-232ENST00000568443 GPR146Q96CH1 333 aa16.6■□□□□ 0.25
CLN3-232ENST00000568443 SCGB3A2Q96PL1 93 aa16.6■□□□□ 0.25
CLN3-232ENST00000568443 TMEM231Q9H6L2 316 aa16.6■□□□□ 0.25
CLN3-232ENST00000568443 MRPL36Q9P0J6 103 aaKnown RBP16.6■□□□□ 0.25
CLN3-232ENST00000568443 SCP2D1Q9UJQ7 156 aa16.6■□□□□ 0.25
CLN3-232ENST00000568443 PLECQ15149 4684 aaKnown RBP16.59■□□□□ 0.25
CLN3-232ENST00000568443 RPS10-NUDT3A0A1W2PQS6 291 aa16.59■□□□□ 0.25
CLN3-232ENST00000568443 DFFBO76075 338 aa16.59■□□□□ 0.25
CLN3-232ENST00000568443 CSTL1Q9H114 145 aa16.59■□□□□ 0.25
CLN3-232ENST00000568443 MS4A6AQ9H2W1 248 aa16.59■□□□□ 0.25
CLN3-232ENST00000568443 TMEM56-RWDD3S4R434 201 aa16.59■□□□□ 0.25
CLN3-232ENST00000568443 TRAV30A0A087WSZ9 112 aa16.58■□□□□ 0.24
CLN3-232ENST00000568443 A0A1W2PS18 150 aa16.58■□□□□ 0.24
CLN3-232ENST00000568443 FABP12A6NFH5 140 aa16.58■□□□□ 0.24
CLN3-232ENST00000568443 CEBPZOSA8MTT3 80 aa16.58■□□□□ 0.24
CLN3-232ENST00000568443 TNFSF8P32971 234 aa16.58■□□□□ 0.24
CLN3-232ENST00000568443 METTL26Q96S19 204 aa16.58■□□□□ 0.24
CLN3-232ENST00000568443 SLIRPQ9GZT3 109 aaKnown RBP16.58■□□□□ 0.24
CLN3-232ENST00000568443 MCUBQ9NWR8 336 aa16.58■□□□□ 0.24
CLN3-232ENST00000568443 CXorf65A6NEN9 183 aa16.57■□□□□ 0.24
CLN3-232ENST00000568443 H3BMQ9 156 aa16.57■□□□□ 0.24
CLN3-232ENST00000568443 MCFD2Q8NI22 146 aa16.57■□□□□ 0.24
CLN3-232ENST00000568443 CACFD1Q9UGQ2 172 aa16.57■□□□□ 0.24
CLN3-232ENST00000568443 MPTX1A8MV57 137 aa16.56■□□□□ 0.24
CLN3-232ENST00000568443 PMS2P11Q13670 270 aa16.56■□□□□ 0.24
CLN3-232ENST00000568443 TIGITQ495A1 244 aa16.56■□□□□ 0.24
CLN3-232ENST00000568443 C2orf83Q53S99 150 aa16.56■□□□□ 0.24
CLN3-232ENST00000568443 IL22RA2Q969J5 263 aa16.56■□□□□ 0.24
CLN3-232ENST00000568443 NARS2Q96I59 477 aaKnown RBP16.56■□□□□ 0.24
CLN3-232ENST00000568443 SOSTQ9BQB4 213 aa16.56■□□□□ 0.24
CLN3-232ENST00000568443 TRAV2A0A0B4J234 112 aa16.55■□□□□ 0.24
CLN3-232ENST00000568443 IGKV1-17P01599 117 aa16.55■□□□□ 0.24
CLN3-232ENST00000568443 SULT1A3P0DMM9 295 aa16.55■□□□□ 0.24
CLN3-232ENST00000568443 SULT1A4P0DMN0 295 aa16.55■□□□□ 0.24
CLN3-232ENST00000568443 AKR1C4P17516 323 aa16.55■□□□□ 0.24
CLN3-232ENST00000568443 EWSR1Q01844 656 aaKnown RBP eCLIP16.55■□□□□ 0.24
CLN3-232ENST00000568443 TMEM187Q14656 261 aa16.55■□□□□ 0.24
CLN3-232ENST00000568443 TMEM217Q8N7C4 229 aa16.55■□□□□ 0.24
CLN3-232ENST00000568443 SLC24A4Q8NFF2 622 aa16.55■□□□□ 0.24
CLN3-232ENST00000568443 RNASEH2CQ8TDP1 164 aaKnown RBP16.55■□□□□ 0.24
CLN3-232ENST00000568443 RABAC1Q9UI14 185 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms