RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	S100A10	P60903	97 aa		13.8	□□□□□ -0.2
COMMD4-222	ENST00000568034	RRAS2	P62070	204 aa	Predicted RBP	13.8	□□□□□ -0.2
COMMD4-222	ENST00000568034	TMEM14EP	Q6UXP3	125 aa		13.8	□□□□□ -0.2
COMMD4-222	ENST00000568034	WFDC9	Q8NEX5	89 aa		13.8	□□□□□ -0.2
COMMD4-222	ENST00000568034	DPF1	Q92782	380 aa		13.8	□□□□□ -0.2
COMMD4-222	ENST00000568034	OR2T8	A6NH00	312 aa		13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	TGOLN2	O43493	480 aa		13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	CCNK	O75909	580 aa		13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	IFNA4	P05014	189 aa		13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	ZP3	P21754	424 aa		13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	ADM	P35318	185 aa		13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	ARL3	P36405	182 aa		13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	MFAP4	P55083	255 aa		13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	CYCS	P99999	105 aa	Known RBP	13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	CD69	Q07108	199 aa		13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	PRSS54	Q6PEW0	395 aa		13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	TREML4	Q6UXN2	200 aa		13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	DCUN1D4	Q92564	292 aa		13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	DLX4	Q92988	240 aa	Predicted RBP	13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	TXN2	Q99757	166 aa		13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	CHRDL1	Q9BU40	450 aa		13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	ZC4H2	Q9NQZ6	224 aa		13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	STRAP	Q9Y3F4	350 aa	Known RBP	13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	MGAM2	Q2M2H8	2515 aa		13.79	□□□□□ -0.2
COMMD4-222	ENST00000568034	GGCT	O75223	188 aa	Known RBP	13.78	□□□□□ -0.2
COMMD4-222	ENST00000568034	DEDD	O75618	318 aa		13.78	□□□□□ -0.2
COMMD4-222	ENST00000568034	RAB11A	P62491	216 aa		13.78	□□□□□ -0.2
COMMD4-222	ENST00000568034	RPP30	P78346	268 aa	Known RBP	13.78	□□□□□ -0.2
COMMD4-222	ENST00000568034		Q56UQ5	140 aa		13.78	□□□□□ -0.2
COMMD4-222	ENST00000568034	ACSM6	Q6P461	480 aa		13.78	□□□□□ -0.2
COMMD4-222	ENST00000568034	SLC16A13	Q7RTY0	426 aa		13.78	□□□□□ -0.2
COMMD4-222	ENST00000568034	UBAC2	Q8NBM4	344 aa		13.78	□□□□□ -0.2
COMMD4-222	ENST00000568034	OR4X1	Q8NH49	305 aa		13.78	□□□□□ -0.2
COMMD4-222	ENST00000568034	PPP1R1C	Q8WVI7	109 aa		13.78	□□□□□ -0.2
COMMD4-222	ENST00000568034	BSCL2	Q96G97	398 aa	Predicted RBP	13.78	□□□□□ -0.2
COMMD4-222	ENST00000568034	NOTCH3	Q9UM47	2321 aa		13.78	□□□□□ -0.2
COMMD4-222	ENST00000568034	RPS10-NUDT3	A0A1W2PQS6	291 aa		13.77	□□□□□ -0.21
COMMD4-222	ENST00000568034	OR2C1	O95371	312 aa		13.77	□□□□□ -0.21
COMMD4-222	ENST00000568034	CTSG	P08311	255 aa		13.77	□□□□□ -0.21
COMMD4-222	ENST00000568034	KLF5	Q13887	457 aa	Predicted RBP	13.77	□□□□□ -0.21
COMMD4-222	ENST00000568034	LRRC37A5P	Q49AS3	106 aa		13.77	□□□□□ -0.21
COMMD4-222	ENST00000568034		Q6ZNX1	250 aa		13.77	□□□□□ -0.21
COMMD4-222	ENST00000568034	HAPLN4	Q86UW8	402 aa		13.77	□□□□□ -0.21
COMMD4-222	ENST00000568034	PKD1L1	Q8TDX9	2849 aa		13.77	□□□□□ -0.21
COMMD4-222	ENST00000568034	OR5AC2	Q9NZP5	309 aa		13.77	□□□□□ -0.21
COMMD4-222	ENST00000568034	PAIP2B	Q9ULR5	123 aa	Known RBP	13.77	□□□□□ -0.21
COMMD4-222	ENST00000568034		L7N2F9	121 aa		13.76	□□□□□ -0.21
COMMD4-222	ENST00000568034	CLN5	O75503	358 aa		13.76	□□□□□ -0.21
COMMD4-222	ENST00000568034	METTL15P1	P0C7V9	234 aa		13.76	□□□□□ -0.21
COMMD4-222	ENST00000568034	SLC25A4	P12235	298 aa		13.76	□□□□□ -0.21
COMMD4-222	ENST00000568034	GPX4	P36969	197 aa	Predicted RBP	13.76	□□□□□ -0.21
COMMD4-222	ENST00000568034	VAMP2	P63027	116 aa		13.76	□□□□□ -0.21
COMMD4-222	ENST00000568034	ARL16	Q0P5N6	197 aa		13.76	□□□□□ -0.21
COMMD4-222	ENST00000568034	RPEL1	Q2QD12	228 aa		13.76	□□□□□ -0.21
COMMD4-222	ENST00000568034	TMEM116	Q8NCL8	245 aa		13.76	□□□□□ -0.21
COMMD4-222	ENST00000568034	RNF126	Q9BV68	326 aa		13.76	□□□□□ -0.21
COMMD4-222	ENST00000568034	TRAV14DV4	A0A0A6YYC5	116 aa		13.75	□□□□□ -0.21
COMMD4-222	ENST00000568034	FAM24A	A6NFZ4	105 aa		13.75	□□□□□ -0.21
COMMD4-222	ENST00000568034	MPC2	O95563	127 aa		13.75	□□□□□ -0.21
COMMD4-222	ENST00000568034	NPBWR1	P48145	328 aa		13.75	□□□□□ -0.21
COMMD4-222	ENST00000568034	RND2	P52198	227 aa		13.75	□□□□□ -0.21
COMMD4-222	ENST00000568034	SYNJ2BP	P57105	145 aa		13.75	□□□□□ -0.21
COMMD4-222	ENST00000568034	ETFRF1	Q6IPR1	90 aa		13.75	□□□□□ -0.21
COMMD4-222	ENST00000568034	SPSB3	Q6PJ21	355 aa		13.75	□□□□□ -0.21
COMMD4-222	ENST00000568034	ACOT7L	Q6ZUV0	252 aa		13.75	□□□□□ -0.21
COMMD4-222	ENST00000568034	CACNG8	Q8WXS5	425 aa		13.75	□□□□□ -0.21
COMMD4-222	ENST00000568034	ZNF436	Q9C0F3	470 aa	Predicted RBP	13.75	□□□□□ -0.21
COMMD4-222	ENST00000568034	LYRM2	Q9NU23	88 aa	Predicted RBP	13.75	□□□□□ -0.21
COMMD4-222	ENST00000568034	GAR1	Q9NY12	217 aa	Known RBP	13.75	□□□□□ -0.21
COMMD4-222	ENST00000568034	IGHV3-35	A0A0C4DH35	117 aa		13.74	□□□□□ -0.21
COMMD4-222	ENST00000568034	IGSF23	A1L1A6	192 aa		13.74	□□□□□ -0.21
COMMD4-222	ENST00000568034	OVOL1	O14753	267 aa		13.74	□□□□□ -0.21
COMMD4-222	ENST00000568034	GNG7	O60262	68 aa		13.74	□□□□□ -0.21
COMMD4-222	ENST00000568034	IGKV1-17	P01599	117 aa		13.74	□□□□□ -0.21
COMMD4-222	ENST00000568034	GIP	P09681	153 aa	Predicted RBP	13.74	□□□□□ -0.21
COMMD4-222	ENST00000568034	IGLC1	P0CG04	106 aa		13.74	□□□□□ -0.21
COMMD4-222	ENST00000568034	CD33	P20138	364 aa		13.74	□□□□□ -0.21
COMMD4-222	ENST00000568034	PVALB	P20472	110 aa	Predicted RBP	13.74	□□□□□ -0.21
COMMD4-222	ENST00000568034	GAMT	Q14353	236 aa		13.74	□□□□□ -0.21
COMMD4-222	ENST00000568034	UNQ9165/PRO28630	Q6UXU0	137 aa		13.74	□□□□□ -0.21
COMMD4-222	ENST00000568034	GPHB5	Q86YW7	130 aa		13.74	□□□□□ -0.21
COMMD4-222	ENST00000568034	C1QL4	Q86Z23	238 aa		13.74	□□□□□ -0.21
COMMD4-222	ENST00000568034	CHAC2	Q8WUX2	184 aa		13.74	□□□□□ -0.21
COMMD4-222	ENST00000568034	NUPL2	O15504	423 aa	Known RBP	13.73	□□□□□ -0.21
COMMD4-222	ENST00000568034	CAV2	P51636	162 aa		13.73	□□□□□ -0.21
COMMD4-222	ENST00000568034	OR8G2P	Q6IF36	304 aa		13.73	□□□□□ -0.21
COMMD4-222	ENST00000568034	IL34	Q6ZMJ4	242 aa		13.73	□□□□□ -0.21
COMMD4-222	ENST00000568034	REC114	Q7Z4M0	266 aa		13.73	□□□□□ -0.21
COMMD4-222	ENST00000568034	TMEM252	Q8N6L7	170 aa		13.73	□□□□□ -0.21
COMMD4-222	ENST00000568034	NPIPB3	Q92617	1050 aa		13.73	□□□□□ -0.21
COMMD4-222	ENST00000568034	ACY3	Q96HD9	319 aa		13.73	□□□□□ -0.21
COMMD4-222	ENST00000568034	IGKV1D-37	A0A075B6S9	117 aa		13.72	□□□□□ -0.21
COMMD4-222	ENST00000568034		E5RGE8	158 aa		13.72	□□□□□ -0.21
COMMD4-222	ENST00000568034	LYL1	P12980	280 aa		13.72	□□□□□ -0.21
COMMD4-222	ENST00000568034	IGLL1	P15814	213 aa		13.72	□□□□□ -0.21
COMMD4-222	ENST00000568034	BCAP31	P51572	246 aa		13.72	□□□□□ -0.21
COMMD4-222	ENST00000568034		Q5BKY6	102 aa		13.72	□□□□□ -0.21
COMMD4-222	ENST00000568034	OR9G4	Q8NGQ1	327 aa		13.72	□□□□□ -0.21
COMMD4-222	ENST00000568034	ASB13	Q8WXK3	278 aa		13.72	□□□□□ -0.21
COMMD4-222	ENST00000568034	TMEM190	Q8WZ59	177 aa		13.72	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms