RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 MCRIP2Q9BUT9 160 aaKnown RBP6.96□□□□□ -1.3
VPS35-206ENST00000565228 C11orf1Q9H5F2 150 aa6.96□□□□□ -1.3
VPS35-206ENST00000565228 MLXQ9UH92 298 aa6.96□□□□□ -1.3
VPS35-206ENST00000565228 IGKV1D-37A0A075B6S9 117 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 FAM240BA0A1B0GVZ2 78 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 CEBPZOSA8MTT3 80 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 A8MWP6 167 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 LGALS9O00182 355 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 DHFRP00374 187 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 IGKV1-17P01599 117 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 APOHP02749 345 aaPredicted RBP6.95□□□□□ -1.3
VPS35-206ENST00000565228 C8orf88P0DMB2 117 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 SLC25A6P12236 298 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 FOLR2P14207 255 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 POLR2GP62487 172 aaKnown RBP eCLIP6.95□□□□□ -1.3
VPS35-206ENST00000565228 SRPXP78539 464 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 DEFB114Q30KQ6 69 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 CD300EQ496F6 205 aaPredicted RBP6.95□□□□□ -1.3
VPS35-206ENST00000565228 PRSS54Q6PEW0 395 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 UBAC2Q8NBM4 344 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 SLC24A4Q8NFF2 622 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 OR1S1Q8NH92 325 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 DTD1Q8TEA8 209 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 ZNF431Q8TF32 576 aaPredicted RBP6.95□□□□□ -1.3
VPS35-206ENST00000565228 TMEM190Q8WZ59 177 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 ZFAND3Q9H8U3 227 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 HEYLQ9NQ87 328 aaPredicted RBP6.95□□□□□ -1.3
VPS35-206ENST00000565228 RCL1Q9Y2P8 373 aaKnown RBP6.95□□□□□ -1.3
VPS35-206ENST00000565228 TMED3Q9Y3Q3 217 aa6.95□□□□□ -1.3
VPS35-206ENST00000565228 IGHV3-49A0A0A0MS15 119 aa6.94□□□□□ -1.3
VPS35-206ENST00000565228 CBLN1P23435 193 aa6.94□□□□□ -1.3
VPS35-206ENST00000565228 NPY1RP25929 384 aa6.94□□□□□ -1.3
VPS35-206ENST00000565228 TIGITQ495A1 244 aa6.94□□□□□ -1.3
VPS35-206ENST00000565228 Q56UQ5 140 aa6.94□□□□□ -1.3
VPS35-206ENST00000565228 FAM209BQ5JX69 171 aa6.94□□□□□ -1.3
VPS35-206ENST00000565228 PLET1Q6UQ28 207 aa6.94□□□□□ -1.3
VPS35-206ENST00000565228 ZBTB8BQ8NAP8 495 aaPredicted RBP6.94□□□□□ -1.3
VPS35-206ENST00000565228 BSCL2Q96G97 398 aaPredicted RBP6.94□□□□□ -1.3
VPS35-206ENST00000565228 PDCD10Q9BUL8 212 aa6.94□□□□□ -1.3
VPS35-206ENST00000565228 SIGLEC8Q9NYZ4 499 aa6.94□□□□□ -1.3
VPS35-206ENST00000565228 ZNF256Q9Y2P7 627 aaPredicted RBP6.94□□□□□ -1.3
VPS35-206ENST00000565228 DNAH7Q8WXX0 4024 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 IGKV1OR2-108A0A075B7D4 117 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 ZNF320A2RRD8 509 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 H3BP45 60 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 WRBO00258 174 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 SYNGR2O43760 224 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 CLN5O75503 358 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 SIX6O95475 246 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 MBPP02686 304 aaPredicted RBP6.93□□□□□ -1.3
VPS35-206ENST00000565228 IL5P05113 134 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 IGLC1P0CG04 106 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 GP9P14770 177 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 SNCAP37840 140 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 HTR2BP41595 481 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 MFAP4P55083 255 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 CD69Q07108 199 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 ARL16Q0P5N6 197 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 TOMM20LQ6UXN7 152 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 GSG1LQ6UXU4 331 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 TMEM182Q6ZP80 229 aaPredicted RBP6.93□□□□□ -1.3
VPS35-206ENST00000565228 C12orf45Q8N5I9 185 aaPredicted RBP6.93□□□□□ -1.3
VPS35-206ENST00000565228 STPG3Q8N7X2 389 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 UXS1Q8NBZ7 420 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 OR1L6Q8NGR2 347 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 OR4X1Q8NH49 305 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 COQ8AQ8NI60 647 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 MRAPQ8TCY5 172 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 MARVELD1Q9BSK0 173 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 WFDC10AQ9H1F0 79 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 C19orf73Q9NVV2 129 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 THYN1Q9P016 225 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 TENM3Q9P273 2699 aa6.93□□□□□ -1.3
VPS35-206ENST00000565228 IGHV3OR16-13A0A075B7E8 117 aa6.92□□□□□ -1.3
VPS35-206ENST00000565228 IGHV3-74A0A0B4J1X5 117 aa6.92□□□□□ -1.3
VPS35-206ENST00000565228 NDUFA4O00483 81 aa6.92□□□□□ -1.3
VPS35-206ENST00000565228 SCAF4O95104 1147 aaKnown RBP6.92□□□□□ -1.3
VPS35-206ENST00000565228 CD7P09564 240 aa6.92□□□□□ -1.3
VPS35-206ENST00000565228 OPRK1P41145 380 aa6.92□□□□□ -1.3
VPS35-206ENST00000565228 INSL3P51460 131 aa6.92□□□□□ -1.3
VPS35-206ENST00000565228 RND2P52198 227 aa6.92□□□□□ -1.3
VPS35-206ENST00000565228 GAMTQ14353 236 aa6.92□□□□□ -1.3
VPS35-206ENST00000565228 IAH1Q2TAA2 248 aaPredicted RBP6.92□□□□□ -1.3
VPS35-206ENST00000565228 MZT2BQ6NZ67 158 aa6.92□□□□□ -1.3
VPS35-206ENST00000565228 BTNL8Q6UX41 500 aa6.92□□□□□ -1.3
VPS35-206ENST00000565228 TMEM61Q8N0U2 210 aa6.92□□□□□ -1.3
VPS35-206ENST00000565228 NPIPB3Q92617 1050 aa6.92□□□□□ -1.3
VPS35-206ENST00000565228 ATP6V0BQ99437 205 aa6.92□□□□□ -1.3
VPS35-206ENST00000565228 ENY2Q9NPA8 101 aa6.92□□□□□ -1.3
VPS35-206ENST00000565228 FAM90A26D6RGX4 464 aa6.91□□□□□ -1.3
VPS35-206ENST00000565228 INMT-MINDY4F8WBC2 141 aa6.91□□□□□ -1.3
VPS35-206ENST00000565228 H0YIZ8 118 aa6.91□□□□□ -1.3
VPS35-206ENST00000565228 SSSCA1O60232 199 aa6.91□□□□□ -1.3
VPS35-206ENST00000565228 IFNA10P01566 189 aa6.91□□□□□ -1.3
VPS35-206ENST00000565228 NKX2-1P43699 371 aaPredicted RBP6.91□□□□□ -1.3
VPS35-206ENST00000565228 FAM90A2PQ658T7 463 aa6.91□□□□□ -1.3
VPS35-206ENST00000565228 SPSB3Q6PJ21 355 aa6.91□□□□□ -1.3
VPS35-206ENST00000565228 TMEM14EPQ6UXP3 125 aa6.91□□□□□ -1.3
VPS35-206ENST00000565228 SLC16A13Q7RTY0 426 aa6.91□□□□□ -1.3
VPS35-206ENST00000565228 TMEM116Q8NCL8 245 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms