RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 KCNIP3Q9Y2W7 256 aa13.71□□□□□ -0.21
CLN3-214ENST00000565140 IGHV7-4-1A0A0J9YVY3 117 aa13.7□□□□□ -0.22
CLN3-214ENST00000565140 CHEK1O14757 476 aa13.7□□□□□ -0.22
CLN3-214ENST00000565140 TMEM50AO95807 157 aa13.7□□□□□ -0.22
CLN3-214ENST00000565140 S100A5P33763 92 aa13.7□□□□□ -0.22
CLN3-214ENST00000565140 NPBWR1P48145 328 aa13.7□□□□□ -0.22
CLN3-214ENST00000565140 CASC10Q5T4H9 136 aa13.7□□□□□ -0.22
CLN3-214ENST00000565140 TOMM20LQ6UXN7 152 aa13.7□□□□□ -0.22
CLN3-214ENST00000565140 RNF2Q99496 336 aa13.7□□□□□ -0.22
CLN3-214ENST00000565140 SPAG8Q99932 426 aaPredicted RBP13.7□□□□□ -0.22
CLN3-214ENST00000565140 FAM110AQ9BQ89 295 aa13.7□□□□□ -0.22
CLN3-214ENST00000565140 RHPN1-AS1Q9BWJ2 59 aa13.7□□□□□ -0.22
CLN3-214ENST00000565140 NXPH3O95157 252 aa13.69□□□□□ -0.22
CLN3-214ENST00000565140 LAMTOR1Q6IAA8 161 aa13.69□□□□□ -0.22
CLN3-214ENST00000565140 TOMM5Q8N4H5 51 aa13.69□□□□□ -0.22
CLN3-214ENST00000565140 TMEM116Q8NCL8 245 aa13.69□□□□□ -0.22
CLN3-214ENST00000565140 IL22RA2Q969J5 263 aa13.69□□□□□ -0.22
CLN3-214ENST00000565140 HEYLQ9NQ87 328 aaPredicted RBP13.69□□□□□ -0.22
CLN3-214ENST00000565140 UBQLN2Q9UHD9 624 aa13.69□□□□□ -0.22
CLN3-214ENST00000565140 RYR3Q15413 4870 aa13.68□□□□□ -0.22
CLN3-214ENST00000565140 IGHV3OR16-13A0A075B7E8 117 aa13.68□□□□□ -0.22
CLN3-214ENST00000565140 TRAV14DV4A0A0A6YYC5 116 aa13.68□□□□□ -0.22
CLN3-214ENST00000565140 IGHV3-74A0A0B4J1X5 117 aa13.68□□□□□ -0.22
CLN3-214ENST00000565140 ZNF701M0R085 212 aaPredicted RBP13.68□□□□□ -0.22
CLN3-214ENST00000565140 CORTO00230 105 aa13.68□□□□□ -0.22
CLN3-214ENST00000565140 OPRK1P41145 380 aa13.68□□□□□ -0.22
CLN3-214ENST00000565140 LYZL2Q7Z4W2 148 aa13.68□□□□□ -0.22
CLN3-214ENST00000565140 A0A1B0GU03 582 aa13.67□□□□□ -0.22
CLN3-214ENST00000565140 APOHP02749 345 aaPredicted RBP13.67□□□□□ -0.22
CLN3-214ENST00000565140 SULT1A3P0DMM9 295 aa13.67□□□□□ -0.22
CLN3-214ENST00000565140 SULT1A4P0DMN0 295 aa13.67□□□□□ -0.22
CLN3-214ENST00000565140 LYL1P12980 280 aa13.67□□□□□ -0.22
CLN3-214ENST00000565140 FAUP35544 74 aaKnown RBP13.67□□□□□ -0.22
CLN3-214ENST00000565140 HTR2BP41595 481 aa13.67□□□□□ -0.22
CLN3-214ENST00000565140 ODF3L2Q3SX64 289 aa13.67□□□□□ -0.22
CLN3-214ENST00000565140 NMSQ5H8A3 153 aa13.67□□□□□ -0.22
CLN3-214ENST00000565140 LILRB2Q8N423 598 aa13.67□□□□□ -0.22
CLN3-214ENST00000565140 TMEM170AQ8WVE7 144 aa13.67□□□□□ -0.22
CLN3-214ENST00000565140 ZFAND3Q9H8U3 227 aa13.67□□□□□ -0.22
CLN3-214ENST00000565140 PUS1Q9Y606 427 aaKnown RBP eCLIP13.67□□□□□ -0.22
CLN3-214ENST00000565140 STARD9Q9P2P6 4700 aa13.66□□□□□ -0.22
CLN3-214ENST00000565140 LOC102724200A0A096LPH7 203 aaPredicted RBP13.66□□□□□ -0.22
CLN3-214ENST00000565140 CEBPZOSA8MTT3 80 aa13.66□□□□□ -0.22
CLN3-214ENST00000565140 CLN5O75503 358 aa13.66□□□□□ -0.22
CLN3-214ENST00000565140 AP3S2P59780 193 aa13.66□□□□□ -0.22
CLN3-214ENST00000565140 FAM90A2PQ658T7 463 aa13.66□□□□□ -0.22
CLN3-214ENST00000565140 ZNF600Q6ZNG1 722 aa13.66□□□□□ -0.22
CLN3-214ENST00000565140 TMED4Q7Z7H5 227 aa13.66□□□□□ -0.22
CLN3-214ENST00000565140 OR4X1Q8NH49 305 aa13.66□□□□□ -0.22
CLN3-214ENST00000565140 GGTLC1Q9BX51 225 aa13.66□□□□□ -0.22
CLN3-214ENST00000565140 DYNC2H1Q8NCM8 4307 aaKnown RBP13.66□□□□□ -0.22
CLN3-214ENST00000565140 A0A0B4J2A0 478 aa13.65□□□□□ -0.22
CLN3-214ENST00000565140 OR4C46A6NHA9 309 aa13.65□□□□□ -0.22
CLN3-214ENST00000565140 C2orf83Q53S99 150 aa13.65□□□□□ -0.22
CLN3-214ENST00000565140 ZFAND6Q6FIF0 208 aa13.65□□□□□ -0.22
CLN3-214ENST00000565140 ST8SIA2Q92186 375 aa13.65□□□□□ -0.22
CLN3-214ENST00000565140 SHPKQ9UHJ6 478 aa13.65□□□□□ -0.22
CLN3-214ENST00000565140 IGKV3-7A0A075B6H7 116 aa13.64□□□□□ -0.23
CLN3-214ENST00000565140 IGKV1-17P01599 117 aa13.64□□□□□ -0.23
CLN3-214ENST00000565140 TFPI2P48307 235 aa13.64□□□□□ -0.23
CLN3-214ENST00000565140 CCR6P51684 374 aa13.64□□□□□ -0.23
CLN3-214ENST00000565140 SMCO1Q147U7 214 aa13.64□□□□□ -0.23
CLN3-214ENST00000565140 TIGITQ495A1 244 aa13.64□□□□□ -0.23
CLN3-214ENST00000565140 SPANXN2Q5MJ10 180 aa13.64□□□□□ -0.23
CLN3-214ENST00000565140 LGI3Q8N145 548 aa13.64□□□□□ -0.23
CLN3-214ENST00000565140 SLC24A4Q8NFF2 622 aa13.64□□□□□ -0.23
CLN3-214ENST00000565140 GINS3Q9BRX5 216 aa13.64□□□□□ -0.23
CLN3-214ENST00000565140 SRRQ9GZT4 340 aa13.64□□□□□ -0.23
CLN3-214ENST00000565140 VSIRQ9H7M9 311 aa13.64□□□□□ -0.23
CLN3-214ENST00000565140 HSPB7Q9UBY9 170 aa13.64□□□□□ -0.23
CLN3-214ENST00000565140 LYSTQ99698 3801 aa13.64□□□□□ -0.23
CLN3-214ENST00000565140 IGHV3-66A0A0C4DH42 116 aa13.63□□□□□ -0.23
CLN3-214ENST00000565140 ANXA3P12429 323 aa13.63□□□□□ -0.23
CLN3-214ENST00000565140 TNFRSF9Q07011 255 aa13.63□□□□□ -0.23
CLN3-214ENST00000565140 TMEM128Q5BJH2 165 aa13.63□□□□□ -0.23
CLN3-214ENST00000565140 PRSS54Q6PEW0 395 aa13.63□□□□□ -0.23
CLN3-214ENST00000565140 GBGT1Q8N5D6 347 aa13.63□□□□□ -0.23
CLN3-214ENST00000565140 RNASEH2CQ8TDP1 164 aaKnown RBP13.63□□□□□ -0.23
CLN3-214ENST00000565140 SLC25A21Q9BQT8 299 aaPredicted RBP13.63□□□□□ -0.23
CLN3-214ENST00000565140 RBKSQ9H477 322 aa13.63□□□□□ -0.23
CLN3-214ENST00000565140 NPY1RP25929 384 aa13.62□□□□□ -0.23
CLN3-214ENST00000565140 SRPXP78539 464 aa13.62□□□□□ -0.23
CLN3-214ENST00000565140 ZNF124Q15973 351 aa13.62□□□□□ -0.23
CLN3-214ENST00000565140 BAK1Q16611 211 aa13.62□□□□□ -0.23
CLN3-214ENST00000565140 TCF24Q7RTU0 167 aa13.62□□□□□ -0.23
CLN3-214ENST00000565140 APRG1Q8IVJ8 170 aa13.62□□□□□ -0.23
CLN3-214ENST00000565140 DEDD2Q8WXF8 326 aa13.62□□□□□ -0.23
CLN3-214ENST00000565140 OVOL2Q9BRP0 275 aa13.62□□□□□ -0.23
CLN3-214ENST00000565140 AGRNO00468 2067 aa13.61□□□□□ -0.23
CLN3-214ENST00000565140 RPS10-NUDT3A0A1W2PQS6 291 aa13.61□□□□□ -0.23
CLN3-214ENST00000565140 DFFBO76075 338 aa13.61□□□□□ -0.23
CLN3-214ENST00000565140 VAMP1P23763 118 aa13.61□□□□□ -0.23
CLN3-214ENST00000565140 RND2P52198 227 aa13.61□□□□□ -0.23
CLN3-214ENST00000565140 SDHCQ99643 169 aaPredicted RBP13.61□□□□□ -0.23
CLN3-214ENST00000565140 CACFD1Q9UGQ2 172 aa13.61□□□□□ -0.23
CLN3-214ENST00000565140 TRAV30A0A087WSZ9 112 aa13.6□□□□□ -0.23
CLN3-214ENST00000565140 PITX3O75364 302 aa13.6□□□□□ -0.23
CLN3-214ENST00000565140 IGLC1P0CG04 106 aa13.6□□□□□ -0.23
CLN3-214ENST00000565140 NPPCP23582 126 aa13.6□□□□□ -0.23
CLN3-214ENST00000565140 PPP1R1AQ13522 171 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms