RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 CD74P04233 296 aa13.94□□□□□ -0.18
VPS35-202ENST00000561713 OR5AC1P0C628 307 aa13.94□□□□□ -0.18
VPS35-202ENST00000561713 UCP1P25874 307 aa13.94□□□□□ -0.18
VPS35-202ENST00000561713 OPRK1P41145 380 aa13.94□□□□□ -0.18
VPS35-202ENST00000561713 NPBWR1P48145 328 aa13.94□□□□□ -0.18
VPS35-202ENST00000561713 TAS2R19P59542 299 aa13.94□□□□□ -0.18
VPS35-202ENST00000561713 SPCS2Q15005 226 aa13.94□□□□□ -0.18
VPS35-202ENST00000561713 LGALS9CQ6DKI2 356 aa13.94□□□□□ -0.18
VPS35-202ENST00000561713 STEAP1BQ6NZ63 245 aa13.94□□□□□ -0.18
VPS35-202ENST00000561713 ZNF600Q6ZNG1 722 aa13.94□□□□□ -0.18
VPS35-202ENST00000561713 Q6ZRM9 215 aa13.94□□□□□ -0.18
VPS35-202ENST00000561713 TMEM229BQ8NBD8 167 aa13.94□□□□□ -0.18
VPS35-202ENST00000561713 DUSP18Q8NEJ0 188 aa13.94□□□□□ -0.18
VPS35-202ENST00000561713 PHLDA1Q8WV24 401 aaPredicted RBP13.94□□□□□ -0.18
VPS35-202ENST00000561713 NXPH3O95157 252 aa13.93□□□□□ -0.18
VPS35-202ENST00000561713 MLANAQ16655 118 aa13.93□□□□□ -0.18
VPS35-202ENST00000561713 TERB2Q8NHR7 220 aa13.93□□□□□ -0.18
VPS35-202ENST00000561713 C6orf62Q9GZU0 229 aaPredicted RBP13.93□□□□□ -0.18
VPS35-202ENST00000561713 MS4A6AQ9H2W1 248 aa13.93□□□□□ -0.18
VPS35-202ENST00000561713 VSIRQ9H7M9 311 aa13.93□□□□□ -0.18
VPS35-202ENST00000561713 ENY2Q9NPA8 101 aa13.93□□□□□ -0.18
VPS35-202ENST00000561713 CTDSP2O14595 271 aa13.92□□□□□ -0.18
VPS35-202ENST00000561713 TMEM50AO95807 157 aa13.92□□□□□ -0.18
VPS35-202ENST00000561713 DEFB131AP59861 70 aa13.92□□□□□ -0.18
VPS35-202ENST00000561713 RPL11P62913 178 aaKnown RBP13.92□□□□□ -0.18
VPS35-202ENST00000561713 ZFAND1Q8TCF1 268 aa13.92□□□□□ -0.18
VPS35-202ENST00000561713 RRNAD1Q96FB5 475 aaKnown RBP13.92□□□□□ -0.18
VPS35-202ENST00000561713 CSTL1Q9H114 145 aa13.92□□□□□ -0.18
VPS35-202ENST00000561713 RABAC1Q9UI14 185 aa13.92□□□□□ -0.18
VPS35-202ENST00000561713 MPTX1A8MV57 137 aa13.91□□□□□ -0.18
VPS35-202ENST00000561713 INS-IGF2F8WCM5 200 aa13.91□□□□□ -0.18
VPS35-202ENST00000561713 GABARAPH6UMI1 98 aa13.91□□□□□ -0.18
VPS35-202ENST00000561713 CA1P00915 261 aaPredicted RBP13.91□□□□□ -0.18
VPS35-202ENST00000561713 MEF2DQ14814 521 aa13.91□□□□□ -0.18
VPS35-202ENST00000561713 TIGITQ495A1 244 aa13.91□□□□□ -0.18
VPS35-202ENST00000561713 PVRIGQ6DKI7 326 aa13.91□□□□□ -0.18
VPS35-202ENST00000561713 TMEM217Q8N7C4 229 aa13.91□□□□□ -0.18
VPS35-202ENST00000561713 OR4C16Q8NGL9 310 aa13.91□□□□□ -0.18
VPS35-202ENST00000561713 NAA60Q9H7X0 242 aa13.91□□□□□ -0.18
VPS35-202ENST00000561713 PRR13Q9NZ81 148 aa13.91□□□□□ -0.18
VPS35-202ENST00000561713 DNASE2O00115 360 aaPredicted RBP13.9□□□□□ -0.18
VPS35-202ENST00000561713 DEFB4AO15263 64 aa13.9□□□□□ -0.18
VPS35-202ENST00000561713 ATG12O94817 140 aa13.9□□□□□ -0.18
VPS35-202ENST00000561713 GPR141Q7Z602 305 aa13.9□□□□□ -0.18
VPS35-202ENST00000561713 STXBP6Q8NFX7 210 aa13.9□□□□□ -0.18
VPS35-202ENST00000561713 SMIM4Q8WVI0 70 aa13.9□□□□□ -0.18
VPS35-202ENST00000561713 RTBDNQ9BSG5 229 aaPredicted RBP13.9□□□□□ -0.18
VPS35-202ENST00000561713 MRPS26Q9BYN8 205 aaKnown RBP13.9□□□□□ -0.18
VPS35-202ENST00000561713 TMEM222Q9H0R3 208 aa13.9□□□□□ -0.18
VPS35-202ENST00000561713 CACNG5Q9UF02 275 aa13.9□□□□□ -0.18
VPS35-202ENST00000561713 C14orf166Q9Y224 244 aaKnown RBP13.9□□□□□ -0.18
VPS35-202ENST00000561713 TEX13DA0A0J9YY54 714 aaPredicted RBP13.89□□□□□ -0.19
VPS35-202ENST00000561713 CORTO00230 105 aa13.89□□□□□ -0.19
VPS35-202ENST00000561713 CLN5O75503 358 aa13.89□□□□□ -0.19
VPS35-202ENST00000561713 ALDH3B2P48448 385 aa13.89□□□□□ -0.19
VPS35-202ENST00000561713 SUB1P53999 127 aaKnown RBP eCLIP13.89□□□□□ -0.19
VPS35-202ENST00000561713 NANOS2P60321 138 aaKnown RBP13.89□□□□□ -0.19
VPS35-202ENST00000561713 PAFAH1B2P68402 229 aa13.89□□□□□ -0.19
VPS35-202ENST00000561713 BSXQ3C1V8 233 aa13.89□□□□□ -0.19
VPS35-202ENST00000561713 OR11H2Q8NH07 326 aa13.89□□□□□ -0.19
VPS35-202ENST00000561713 GLYATL2Q8WU03 294 aa13.89□□□□□ -0.19
VPS35-202ENST00000561713 RARRES2Q99969 163 aa13.89□□□□□ -0.19
VPS35-202ENST00000561713 IGKV1-17P01599 117 aa13.88□□□□□ -0.19
VPS35-202ENST00000561713 P2RY1P47900 373 aa13.88□□□□□ -0.19
VPS35-202ENST00000561713 PRR20EP86478 221 aa13.88□□□□□ -0.19
VPS35-202ENST00000561713 PRR20CP86479 221 aa13.88□□□□□ -0.19
VPS35-202ENST00000561713 PRR20DP86480 221 aa13.88□□□□□ -0.19
VPS35-202ENST00000561713 PRR20BP86481 221 aa13.88□□□□□ -0.19
VPS35-202ENST00000561713 PRR20AP86496 221 aa13.88□□□□□ -0.19
VPS35-202ENST00000561713 IL18Q14116 193 aa13.88□□□□□ -0.19
VPS35-202ENST00000561713 TMEM268Q5VZI3 342 aa13.88□□□□□ -0.19
VPS35-202ENST00000561713 CLVS1Q8IUQ0 354 aaPredicted RBP13.88□□□□□ -0.19
VPS35-202ENST00000561713 SELENOHQ8IZQ5 122 aaKnown RBP13.88□□□□□ -0.19
VPS35-202ENST00000561713 FBXL17Q9UF56 701 aa13.88□□□□□ -0.19
VPS35-202ENST00000561713 CDS2O95674 445 aa13.87□□□□□ -0.19
VPS35-202ENST00000561713 RND2P52198 227 aa13.87□□□□□ -0.19
VPS35-202ENST00000561713 SPCS3P61009 180 aa13.87□□□□□ -0.19
VPS35-202ENST00000561713 OR4X1Q8NH49 305 aa13.87□□□□□ -0.19
VPS35-202ENST00000561713 C15orf40Q8WUR7 153 aa13.87□□□□□ -0.19
VPS35-202ENST00000561713 TMEM170AQ8WVE7 144 aa13.87□□□□□ -0.19
VPS35-202ENST00000561713 RBPMSQ93062 196 aaKnown RBP13.87□□□□□ -0.19
VPS35-202ENST00000561713 GPR146Q96CH1 333 aa13.87□□□□□ -0.19
VPS35-202ENST00000561713 METTL26Q96S19 204 aa13.87□□□□□ -0.19
VPS35-202ENST00000561713 HEYLQ9NQ87 328 aaPredicted RBP13.87□□□□□ -0.19
VPS35-202ENST00000561713 FAT2Q9NYQ8 4349 aa13.86□□□□□ -0.19
VPS35-202ENST00000561713 KNCNA6PVL3 124 aa13.86□□□□□ -0.19
VPS35-202ENST00000561713 CEBPZOSA8MTT3 80 aa13.86□□□□□ -0.19
VPS35-202ENST00000561713 DISC1C4P0D8 188 aa13.86□□□□□ -0.19
VPS35-202ENST00000561713 ZNF688P0C7X2 276 aa13.86□□□□□ -0.19
VPS35-202ENST00000561713 NPPCP23582 126 aa13.86□□□□□ -0.19
VPS35-202ENST00000561713 RBMS2Q15434 407 aaKnown RBP13.86□□□□□ -0.19
VPS35-202ENST00000561713 OR51S1Q8NGJ8 323 aa13.86□□□□□ -0.19
VPS35-202ENST00000561713 GATAD1Q8WUU5 269 aa13.86□□□□□ -0.19
VPS35-202ENST00000561713 TMEM230Q96A57 120 aa13.86□□□□□ -0.19
VPS35-202ENST00000561713 DIRAS2Q96HU8 199 aa13.86□□□□□ -0.19
VPS35-202ENST00000561713 TMEM231Q9H6L2 316 aa13.86□□□□□ -0.19
VPS35-202ENST00000561713 DNAH2Q9P225 4427 aa13.86□□□□□ -0.19
VPS35-202ENST00000561713 CRYM-AS1A6NIL9 109 aa13.85□□□□□ -0.19
VPS35-202ENST00000561713 IGLC1P0CG04 106 aa13.85□□□□□ -0.19
VPS35-202ENST00000561713 AKAIN1P0CW23 69 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms